View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20769_low_7 (Length: 206)
Name: NF20769_low_7
Description: NF20769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20769_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 41548258 - 41548073
Alignment:
| Q |
1 |
agttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaagccaagacggctgaaaaaactcataa |
100 |
Q |
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| T |
41548258 |
agttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaagccaagacggctgaaaaaactcataa |
41548159 |
T |
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| Q |
101 |
taagttgaaacaagaaagtaaggaaactattgaatttctaagaaagagaaacgttgggttgaagtgtgaggttgacaggttgaacg |
186 |
Q |
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| T |
41548158 |
taagttgaaacaagaaagtaaggaaactattgaatttctaagaaagagaaacgttgggttgaagtgtgaggttgacaggttgaacg |
41548073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41509707 - 41509652
Alignment:
| Q |
1 |
agttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
56 |
Q |
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| T |
41509707 |
agttaaagaaaagagaggaaatttttcagaaagggaagaaagtacaagaacgttat |
41509652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41519933 - 41519878
Alignment:
| Q |
1 |
agttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
56 |
Q |
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| T |
41519933 |
agtttaagaaaagagaggaactttgtcagaaagggaagaaagtacaagaacgttat |
41519878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 41469969 - 41469895
Alignment:
| Q |
1 |
agttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaag |
75 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||| | ||||| ||||| |||| |
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| T |
41469969 |
agtttaagaaaagagaggaaatttgtgagaaaggtaagaaagtaaaagaaagttatgaagctcttttgaaagaag |
41469895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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