View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_high_1 (Length: 628)
Name: NF2076_high_1
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 399 - 612
Target Start/End: Original strand, 5733666 - 5733881
Alignment:
| Q |
399 |
gttgaaagggtctgagttggacttggaggcttaaataaaaaagtgattatttata--tatatatttgtggagttgttgttggtgtattcaattgtgttga |
496 |
Q |
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| T |
5733666 |
gttgaaagggtctgagttggacttggaggcttaaataaaaaagtgattatttatatatatatatttgtggagttgttgttggtgtattcaattgtgttga |
5733765 |
T |
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| Q |
497 |
tgaattgaagtgagagtggggtttaaggtttttaaaaacttggccaaaaaggttatattatatggtaagaatttaatttgtaaaattattttatatatgt |
596 |
Q |
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| T |
5733766 |
tgaattgaagtgagagtggggtttaaggttttaaaaaacttggccaaaaaggttatattatatggtaagaatttaatttgtaaaattattttatatatgt |
5733865 |
T |
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| Q |
597 |
atctcatcaaactatg |
612 |
Q |
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| T |
5733866 |
atctcatcaaattatg |
5733881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 5733452 - 5733573
Alignment:
| Q |
185 |
tcagcagaagaacaaacccatgttgtaaaaatcatatttttacaaatcctgattcaaaattcaacacttttatgagtattcaaccttctgggttgtcttt |
284 |
Q |
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| T |
5733452 |
tcagcagaagaacaaacccatgttgtaaaaatcatatttttacaaatcctgattcaaaattcaacacttttatgagtattcaaccttctgggttgtcttt |
5733551 |
T |
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| Q |
285 |
tttaggttgatttagaaaataa |
306 |
Q |
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| T |
5733552 |
tttaggttgatttagaaaataa |
5733573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 5733284 - 5733338
Alignment:
| Q |
17 |
tctacatagcaagaacaaaacaaacagaagcagcaaaagctaatacacaattcag |
71 |
Q |
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| T |
5733284 |
tctacatagcaagaacaaaacaaacagaagcagcaaaagctaatacacaattcag |
5733338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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