View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2076_high_11 (Length: 293)
Name: NF2076_high_11
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 11589082 - 11589360
Alignment:
| Q |
7 |
tcgaagaaaatagctagagatcaagaatagagattttttggagcaatcatgggccatattcctcaggatgaagttgagcaaaaattatttgaggccttgg |
106 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11589082 |
tcgaagaaagtagctagagatcaagaatagagattttttggagcaatcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttgg |
11589181 |
T |
|
| Q |
107 |
aaaatggaaattgataatctaattattatagaaattcctgctaatgctgatgattttcaagttgtgaacatatcagaaggtgagaataaagggaagaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11589182 |
aaaatggaaattgataatctaattatcatagaaattcctgctaatgctgatgattttcaaattgtgaacatttcagaaggtgagaataaagggaagaaaa |
11589281 |
T |
|
| Q |
207 |
cttcacatcttaaaagtaattatagaactataggaaaaacttgtcatcctaaaccctttagatggtgattatttattgaaacataa |
292 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
11589282 |
cttcacatctt-------attatagaactataggaaaaacttgtcatcctaaactttttagatgatgattatttattgaaacataa |
11589360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 11601667 - 11601945
Alignment:
| Q |
7 |
tcgaagaaaatagctagagatcaagaatagagattttttggagcaatcatgggccatattcctcaggatgaagttgagcaaaaattatttgaggccttgg |
106 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11601667 |
tcgaagaaagtagctagagatcaagaatagagattttttggagcaatcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttgg |
11601766 |
T |
|
| Q |
107 |
aaaatggaaattgataatctaattattatagaaattcctgctaatgctgatgattttcaagttgtgaacatatcagaaggtgagaataaagggaagaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11601767 |
aaaatggaaattgataatctaattatcatagaaattcctgctaatgctgatgattttcaaattgtgaacatttcagaaggtgagaataaagggaagaaaa |
11601866 |
T |
|
| Q |
207 |
cttcacatcttaaaagtaattatagaactataggaaaaacttgtcatcctaaaccctttagatggtgattatttattgaaacataa |
292 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
11601867 |
cttcacatctt-------attatagaactataggaaaaacttgtcatcctaaactttttagatgatgattatttattgaaacataa |
11601945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University