View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_high_14 (Length: 248)
Name: NF2076_high_14
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 47279921 - 47280134
Alignment:
| Q |
16 |
atgagtaaatattaaaacagaacaaggtcttcaaatattatttatggagaaaacatttaatttccctctcaaacctagaagagcaatctaatttgtggaa |
115 |
Q |
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| T |
47279921 |
atgagtaaatattaaaacagaacaaggtcttcaaatattatttatggagaaaacatttaatttccctctcaaacctagaagagcaatctaatttgtggaa |
47280020 |
T |
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| Q |
116 |
gaaaaatgcaaaatcttagaacctaatgaggacatgctcatagctaggaatcacaaagaagccttgtcatctgaaggaagaatagctatctgtctaaaac |
215 |
Q |
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| T |
47280021 |
gaaaaatgcaaaatcttagaacctaatgaggacatgctcatagctaggaatcacaaagaagccttgtcatctgaaggaagaatagctatctgtctaaaac |
47280120 |
T |
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| Q |
216 |
attcacttgagggg |
229 |
Q |
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| T |
47280121 |
attcacttgagggg |
47280134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 49059499 - 49059555
Alignment:
| Q |
169 |
caaagaagccttgtcatctgaaggaagaatagctatctgtctaaaacattcacttga |
225 |
Q |
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| T |
49059499 |
caaagaagccatgttatctgaaggaggaacagctgtctgtctaaaacattcacttga |
49059555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 47285733 - 47285831
Alignment:
| Q |
60 |
tggagaaaacatttaatttccctctcaaacctagaagagcaatctaatttgtggaagaaaaatgcaaaatcttagaacctaatgaggacatgctcatagc |
159 |
Q |
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| T |
47285733 |
tggagaacacatgtcatttccctctca----tagaagagcagtccaaattgtggaagacaattgcaaaagctaggaaccgaataaggacatgctcatggc |
47285828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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