View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_high_2 (Length: 589)
Name: NF2076_high_2
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 11 - 574
Target Start/End: Complemental strand, 51581403 - 51580855
Alignment:
| Q |
11 |
caaaggtgaaacttaaacagcatttgaatgctttattggaatcaatatcagttacatagttattcgtatttatgattccaaattgtgaccatttttggga |
110 |
Q |
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| T |
51581403 |
caaaggtgaaacttaaacagcatttggatgctttattggaatcaatatcagttacatagttattcgtatatatgattccaaattgtgaccatttttggga |
51581304 |
T |
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| Q |
111 |
aactataaatatgggagcagacctgtttcatttagcatatcaatcagatttttgcattcgttgagtataaaatctgtataatgttgtatttagtattgca |
210 |
Q |
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| T |
51581303 |
aactagtaatatgggagcagacctgtttcattcagcatatcaaa-----ttgtgc-------gag---aaaatctgtataatgttgtatttagtattgca |
51581219 |
T |
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| Q |
211 |
cttaaaaacttgtgcgagaaagagtgcctttgaagtgtataatatgtacacatgtgtacaatttcaaattgaaatcggtctgatctgtttatggtgatga |
310 |
Q |
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| T |
51581218 |
cttaaaaacttgtgcgagaaagagtgcctttgaagtgtataatatgtacacatgtgtacaatttcaaattgaaatcggtctgatctgtttatggtgatga |
51581119 |
T |
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| Q |
311 |
tgatctcacttggtttttgtaccaagtaattagtaattatataaatttatttttaaagaatgacacagttttgtagcaggtatattgcttaacttaatta |
410 |
Q |
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| T |
51581118 |
tgatctcacttgtttttcgtaccaagtaattagtaattatataaatttatttttaaagaatgacacagttttgtagcaggtatattgcttaacttaatta |
51581019 |
T |
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| Q |
411 |
agctagtaaaccaccatattctttgaagtgattgaaatttgatggcaaaaaacaagtcaacaacttttcaagtcattccataatctagtttgttctttcg |
510 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51581018 |
agctagtaaagcaccataatctttgaagtgattgaaatttgatggcaaaaaacaagtcaacaacttttcaagtcattccataatctagtttgttctttcg |
51580919 |
T |
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| Q |
511 |
catcaacgtacattgtaaatgagaacatttgttcaactttgagtagtgacatcaggaacaaatt |
574 |
Q |
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| T |
51580918 |
catcaacgtacattgtaaatgggaacatttgttcaactttgagtagtgacatcaggaacaaatt |
51580855 |
T |
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