View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2076_high_3 (Length: 576)
Name: NF2076_high_3
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 44 - 560
Target Start/End: Original strand, 44315006 - 44315520
Alignment:
| Q |
44 |
cactctataaaatcgcgtgaaacggtaacggcaacttccaatcccttgttctctcggtctttcttggtgagggacctttttctaaaaccttaattatgac |
143 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44315006 |
cactctatgaaatcgcgtgaaacggtaacggcaacttccaatgccttgttctctcggtctttctcggtgagggacctttttctaaaaccttaattatgac |
44315105 |
T |
|
| Q |
144 |
catatgaagcttaagagccaaacaggaaaatgacacaagagtagtcaagaggtcaatttatgagtgagcgccattgattgaagggaagattattggatcg |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44315106 |
catatgaagcttaagagccaaacaggaaaatgacacaagagtagtcaagaggtcaatttatgagtgagcgccattgattgaagggaagattattggatcg |
44315205 |
T |
|
| Q |
244 |
ccggtatcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaa--tttccgttactataaaatacctcaacacctatg |
341 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44315206 |
cc-gtatcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttttccgttactataaaatacctcaacacctatg |
44315304 |
T |
|
| Q |
342 |
aaaccaaacacactctacctcaaaccaaggaatcctaattaaaaagaaaatgaattcttcaacaatttgttccctgttccttggtttgatcctaacttct |
441 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44315305 |
aaaccaaacacactcttcctcaaaccaaggaatcctaattaaaaagaaaatgaattcttcaacaatttgttccctgttccttggtttgatcctaatttct |
44315404 |
T |
|
| Q |
442 |
caatcaccatttgcagtaaatgcaacacttcttggtttnnnnnnnnnnnnnnnnnnnccacttgtttccttaatttgcgctgcttcatccaacaaggtag |
541 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44315405 |
caatcaccatttgcagcaaatgcaacacttcttggttt---aggaggaggaggaggaccactagtttccttaatttgcgctgcttcatccaacaaggtag |
44315501 |
T |
|
| Q |
542 |
aatgtaacaatgttctatc |
560 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
44315502 |
aatgtaacaaggttctatc |
44315520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 44 - 560
Target Start/End: Original strand, 44307965 - 44308479
Alignment:
| Q |
44 |
cactctataaaatcgcgtgaaacggtaacggcaacttccaatcccttgttctctcggtctttcttggtgagggacctttttctaaaaccttaattatgac |
143 |
Q |
| |
|
|||| |||||||||| | ||||| ||| ||||||||||||| |||| | || ||||||||| || ||||||||||||||| ||||||| || | ||| |
|
|
| T |
44307965 |
cactttataaaatcgggggaaacagtagaggcaacttccaataccttatcgtcgtggtctttctcggcgagggacctttttctcaaaccttgatcaggac |
44308064 |
T |
|
| Q |
144 |
catatgaagcttaagagccaaacaggaaaatgacacaagagtagtcaagaggtcaatttatgagtgagcgccattgattg-aagggaagattattggatc |
242 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||| | || ||||||||||||| |
|
|
| T |
44308065 |
catatgatgcttaagagccaaacaggaaaatgacacaagaat----------tcaatttgcgagtgagcatcattgaagggaaatctagattattggatc |
44308154 |
T |
|
| Q |
243 |
gccggtatcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttccgttactataaaatacctcaacacctatga |
342 |
Q |
| |
|
|||| | |||||| |||||| || |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
44308155 |
gccgtt-tcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaacaccccaacacctatga |
44308253 |
T |
|
| Q |
343 |
aaccaaacacactctacctcaaaccaaggaatcctaatt-----aaaaagaaaatgaattcttcaacaatttgttccctgttccttggtttgatcctaac |
437 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44308254 |
aaccaaacacacttttcctcaaaccaaggaaccctaatttaaaaaaaaaaaatatgaattcttcaacaatttgttccctgttccttggtttgatcctaat |
44308353 |
T |
|
| Q |
438 |
ttctcaatcaccatttgcagtaaatgcaacacttcttggttt---nnnnnnnnnnnnnnnnnnnccacttgtttccttaatttgcgctgcttcatccaac |
534 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
44308354 |
ttctcaatcaccatttgcagcaaatgcaagagttcttggtttaggaggaggaggaggaagaggaccactggtttccttactttgcgctgcttcatccaac |
44308453 |
T |
|
| Q |
535 |
aaggtagaatgtaacaatgttctatc |
560 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
44308454 |
aaggtagaatgtaacaaggttctatc |
44308479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 50 - 560
Target Start/End: Original strand, 44194024 - 44194520
Alignment:
| Q |
50 |
ataaaatcgcgtgaaacggtaacggcaacttccaatcccttgttctctcggtctttcttggtgagggacctttttctaaaa--ccttaattatgaccata |
147 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||| ||||| | || || || |||| | ||||||||||||| ||||| |||| || | ||||||| |
|
|
| T |
44194024 |
ataaaatcgggggaaacggtaacggcaactaccaataccttgctgtcgcgctcattctcgtcgagggacctttttttaaaaaacctttatcaggaccata |
44194123 |
T |
|
| Q |
148 |
tgaagcttaagagccaaacaggaaaatgacacaagagtagtcaagaggtcaatttatgagtgagcgccattgatt-gaagggaagattattggatcgccg |
246 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||||| || || | ||||||| ||| ||||||||||||| || |
|
|
| T |
44194124 |
tgatgcttaagagccaaacaggaaaatgacacaagagt----------tcaattttctagcgaaccccattgaagagaaatctagattattggatcacca |
44194213 |
T |
|
| Q |
247 |
gtatcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttccgttactataaaatacctcaacacctatgaaacc |
346 |
Q |
| |
|
| ||| || |||||| |||||| |||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
44194214 |
tt-tccaaagcatcaccatcgctatgatttgctaaaaatatgttaattatcctaaattagaattttcgttactataaaacactccaacacctatgaaacc |
44194312 |
T |
|
| Q |
347 |
aaacacactctacctcaaaccaaggaatcctaattaaaaagaaaatgaattcttcaacaatttgttccctgttccttggtttgatcctaacttctcaatc |
446 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
44194313 |
aaacacactcc-cgtcaaaccaaggaaccctaatttaaaa--aaatgaattcttcaacaatttgttccatgttccttggtttgatcctaatttctcaatc |
44194409 |
T |
|
| Q |
447 |
accatttgcagtaaatgcaacacttcttggtttnnnnnnnnnnnnnnnnnnnccacttgtttccttaatttgcgctgcttcatccaacaaggtagaatgt |
546 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44194410 |
accatttgcatcaaatgcaagacttcttggttt---aggaggaggaggaggaccattagtttccttaatttgcgctgcttcatccaacaaggtagaatgt |
44194506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 250 - 560
Target Start/End: Original strand, 44300654 - 44300954
Alignment:
| Q |
250 |
tcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttccgttactataaaatacctcaacacctatgaaaccaaa |
349 |
Q |
| |
|
|||||| |||| ||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
44300654 |
tcccaagcatcgcaatcgctgtgatttcttgaaagtacg----ttaccctaaattagaatttccgttactataaaacactccaacacctatgaaaccaaa |
44300749 |
T |
|
| Q |
350 |
cacactctacctcaaaccaaggaatcctaattaaaaagaaaatgaattcttcaacaatttgttccctgttccttggtttgatcctaacttctcaatcacc |
449 |
Q |
| |
|
||||||| | ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
44300750 |
cacactc-ccgtcaaaccaaggaaccctaatttaaa--aaaatgaattcttcaacaatttgttccatgttccttggtttgatcctaatttctcaatcacc |
44300846 |
T |
|
| Q |
450 |
atttgcagtaaatgcaacacttcttggtttnnnnnnnnnnnnnnnnnnnccacttgtttccttaatttgcgctgcttcatccaacaaggtagaatgtaac |
549 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44300847 |
atttgcatcaaatgcaagacttcttggttt---aggaggaggaggaggaccattagtttccttaatttgcgctgcttcatccaacaaggtagaatgtagc |
44300943 |
T |
|
| Q |
550 |
aatgttctatc |
560 |
Q |
| |
|
||||||||||| |
|
|
| T |
44300944 |
aatgttctatc |
44300954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 5e-82; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 250 - 475
Target Start/End: Complemental strand, 23715377 - 23715149
Alignment:
| Q |
250 |
tcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttccgttactataaaatacctcaacacctatgaaaccaaa |
349 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
23715377 |
tcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacctatgaaaccaaa |
23715278 |
T |
|
| Q |
350 |
cacactctacctcaaaccaaggaatcctaattaaaaaga---aaatgaattcttcaacaatttgttccctgttccttggtttgatcctaacttctcaatc |
446 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
23715277 |
cacactcttcctcaaaccaaggaaccctaattaaaaaaaaataaatgaattctttaacaatttgttccatgttccttggtttgattctaatttctcaatc |
23715178 |
T |
|
| Q |
447 |
accatttgcagtaaatgcaacacttcttg |
475 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
23715177 |
accatttgcagcaaatgcaacacttcttg |
23715149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 250 - 475
Target Start/End: Complemental strand, 23733833 - 23733605
Alignment:
| Q |
250 |
tcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttccgttactataaaatacctcaacacctatgaaaccaaa |
349 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
23733833 |
tcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacctatgaaaccaaa |
23733734 |
T |
|
| Q |
350 |
cacactctacctcaaaccaaggaatcctaattaaaaaga---aaatgaattcttcaacaatttgttccctgttccttggtttgatcctaacttctcaatc |
446 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
23733733 |
cacactcttcctcaaaccaaggaaccctaattaaaaaaaaataaatgaattctttaacaatttgttccatgttccttggtttgattctaatttctcaatc |
23733634 |
T |
|
| Q |
447 |
accatttgcagtaaatgcaacacttcttg |
475 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
23733633 |
accatttgcagcaaatgcaacacttcttg |
23733605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 250 - 475
Target Start/End: Complemental strand, 23752292 - 23752060
Alignment:
| Q |
250 |
tcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttccgttactataaaatacctcaacacctatgaaaccaaa |
349 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
23752292 |
tcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcctttactataaaacaccccaacacctatgaaaccaaa |
23752193 |
T |
|
| Q |
350 |
cacactctacctcaaaccaaggaatcctaatta-------aaaagaaaatgaattcttcaacaatttgttccctgttccttggtttgatcctaacttctc |
442 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||| |
|
|
| T |
23752192 |
cacactcttcctcaaaccaaggaaccctaattaaaaaaataaaaaaaaatgaattctttaacaatttgttccatgttccttggtttgattctaatttctc |
23752093 |
T |
|
| Q |
443 |
aatcaccatttgcagtaaatgcaacacttcttg |
475 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
23752092 |
aatcaccatttgcagcaaatgcaacacttcttg |
23752060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 250 - 475
Target Start/End: Complemental strand, 23696922 - 23696689
Alignment:
| Q |
250 |
tcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttccgttactataaaatacctcaacacctatgaaaccaaa |
349 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
23696922 |
tcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacctgtgaaaccaaa |
23696823 |
T |
|
| Q |
350 |
cacactctacctcaaaccaaggaatcctaatta--------aaaagaaaatgaattcttcaacaatttgttccctgttccttggtttgatcctaacttct |
441 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||| |||| |||| |
|
|
| T |
23696822 |
cacactcttcctcaaaccaaggaaccctaattaaaaaaaaaaaaaaaaaatgaattctttaacaatttgttccatgttccttggtttgattctaatttct |
23696723 |
T |
|
| Q |
442 |
caatcaccatttgcagtaaatgcaacacttcttg |
475 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
23696722 |
caatcaccatttgcagcaaatgcaacacttcttg |
23696689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 560
Target Start/End: Complemental strand, 23696668 - 23696607
Alignment:
| Q |
499 |
ccacttgtttccttaatttgcgctgcttcatccaacaaggtagaatgtaacaatgttctatc |
560 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
23696668 |
ccactagtttccttactttgcgacggttcatccaacaaggtagaatgcagcaaggttctatc |
23696607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 560
Target Start/End: Complemental strand, 23715125 - 23715064
Alignment:
| Q |
499 |
ccacttgtttccttaatttgcgctgcttcatccaacaaggtagaatgtaacaatgttctatc |
560 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
23715125 |
ccactagtttccttactttgcgacggttcatccaacaaggtagaatgcagcaaggttctatc |
23715064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 560
Target Start/End: Complemental strand, 23733581 - 23733520
Alignment:
| Q |
499 |
ccacttgtttccttaatttgcgctgcttcatccaacaaggtagaatgtaacaatgttctatc |
560 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
23733581 |
ccactagtttccttactttgcgacggttcatccaacaaggtagaatgcagcaaggttctatc |
23733520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 560
Target Start/End: Complemental strand, 23752036 - 23751975
Alignment:
| Q |
499 |
ccacttgtttccttaatttgcgctgcttcatccaacaaggtagaatgtaacaatgttctatc |
560 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
23752036 |
ccactagtttccttactttgcgacggttcatccaacaaggtagaatgcagcaaggttctatc |
23751975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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