View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_high_4 (Length: 473)
Name: NF2076_high_4
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 5823014 - 5823411
Alignment:
| Q |
16 |
atgcttgaatatagacccaaacgaaagaccagcaatgggcgaggttgaggttgaactcgagcttgctctagcactgcaggaggaaacagatgatgggaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5823014 |
atgcttgaatatagacccaaacgaaagaccagcaatgggcgaggttgaggttgaactcgagcatgctctagcactgcaggaggaaacagatgatgggaaa |
5823113 |
T |
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| Q |
116 |
atgaatggaggttgaacttgagtaagctcccatttgggttgaaaatgtacagatgatagttctttggcttgtggttgccaaatacaattctctggatgaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5823114 |
atgaatggaggttgaacttgagtaagctcccatttgggttgaaaatgtacagatgatagttctttggcttgtggttgccaaatacaattctctggatcaa |
5823213 |
T |
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| Q |
216 |
aaggttatcattctctggatgaaaaggttattactgcaaaaggaaaactattttaatcttatttgacaataatattttatcataatatatgccaaaattt |
315 |
Q |
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| T |
5823214 |
aaggttatcattctctggatgaaaaaattattactgcaaaaggaaaactattttaatcttatttgacaataatattttatcataatatatgccaaaattt |
5823313 |
T |
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| Q |
316 |
atatgactttctataaacaattaagcgcgatagaaaatcagataaacaaacattatgtgtcaatcttttcgctagtttgtaataaagaaaatacatca |
413 |
Q |
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| T |
5823314 |
atatcactttctataaacaattaagcgcgatagaaaatcggataaacatacattatgtgtcggtcttttcactagtttataataaagaaaatacatca |
5823411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 4903249 - 4903149
Alignment:
| Q |
16 |
atgcttgaatatagacccaaacgaaagaccagcaatgggcgaggttgaggttgaactcgagcttgctctagcactgcaggaggaaacagatgatgggaaa |
115 |
Q |
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| T |
4903249 |
atgcttgaatatagaaccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagcatgctctagcactgcaggaggaagcagattgtgggaaa |
4903150 |
T |
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| Q |
116 |
a |
116 |
Q |
| |
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| |
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| T |
4903149 |
a |
4903149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 4906626 - 4906536
Alignment:
| Q |
16 |
atgcttgaatatagacccaaacgaaagaccagcaatgggcgaggttgaggttgaactcgagcttgctctagcactgcaggaggaaacagat |
106 |
Q |
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||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||| |||||| | ||||||||||||| ||||| |
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| T |
4906626 |
atgcttgaatatagaaccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagat |
4906536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 4929346 - 4929419
Alignment:
| Q |
32 |
ccaaacgaaagaccagcaatgggcgaggttgaggttgaactcgagcttgctctagcactgcaggaggaaacaga |
105 |
Q |
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| T |
4929346 |
ccaaatgaaagaccttcaatgggtgaggttgaggttgaacttgagcatgctctagcactgcaggaggaagcaga |
4929419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 4924011 - 4924085
Alignment:
| Q |
32 |
ccaaacgaaagaccagcaatgggcgaggttgaggttgaactcgagcttgctctagcactgcaggaggaaacagat |
106 |
Q |
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||||| ||||||||| ||||||| ||||||||||||||||| |||| |||| | ||||||||||||||| ||||| |
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| T |
4924011 |
ccaaatgaaagaccaacaatgggtgaggttgaggttgaacttgagcatgctttggcactgcaggaggaagcagat |
4924085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 25536682 - 25536728
Alignment:
| Q |
266 |
ttttaatcttatttgacaataatattttatcataatatatgccaaaa |
312 |
Q |
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| T |
25536682 |
ttttaatcttatttgtcaaaaatattttatcataatatatgccaaaa |
25536728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 5823685 - 5823722
Alignment:
| Q |
419 |
aacatatttggtcatggttagaacactgcttttggggc |
456 |
Q |
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| T |
5823685 |
aacatatttggtcatggttagaacactgcttttggggc |
5823722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 45064047 - 45064102
Alignment:
| Q |
259 |
aaaactattttaatcttatttgacaataatattttatcataatatatgccaaaatt |
314 |
Q |
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|||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
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| T |
45064047 |
aaaattattttaatcatatttgtcaaaaatattttatcataatatatgccaaaatt |
45064102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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