View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_high_6 (Length: 428)
Name: NF2076_high_6
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 9300513 - 9300910
Alignment:
| Q |
1 |
gatggcgtcaataggctcaatgcacgtttagtggctaaagggtttcaccaactgcaagattttgatttta-tgagacattctaccatgtcatcgaacttg |
99 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
9300513 |
gatggagtcaataggctcaatgcacgtttagtggctaaagggtttcaccaactgcaagattttgattttaatgagacattctaccatgtcatcaaacttg |
9300612 |
T |
|
| Q |
100 |
tcatcatcagacttgtcctctctcttgctatttcctacaactagactattcatcaacttgatgtaaataatgccttcttaaatggcaacttgaatgagga |
199 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9300613 |
tcaccatcagacttttcctctctcttgctatttcctacaactagactattcatcaacttgatgtaaataatgccttcttaaatggcaacttgaatgagga |
9300712 |
T |
|
| Q |
200 |
agtgtacgtgcaagaaccccaaggctttgaatcttcacacccttcacttgtttgtaaactcaacaaggctctctatggcctcgagcaagctcctagacaa |
299 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9300713 |
agtgtacgtgcaacaaccccaaggctttgaatcttcacacccttaacttgtttgtaaactcaacaaggctctctatggcctcgagcaagctcctagacaa |
9300812 |
T |
|
| Q |
300 |
tggtttgagagactcaaaaccaccttattgtctttgggtttttaggatagcaatccctccctcttcagatatactattaacatcatatagtttacctc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9300813 |
tggtttgagagactcaaaaccaccttattgtctttgggtttttaggatagcaatccctccctcttcagatatactattaacatcatatagtttacctc |
9300910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 307
Target Start/End: Original strand, 3218829 - 3218995
Alignment:
| Q |
141 |
tagactattcatcaacttgatgtaaataatgccttcttaaatggcaacttgaatgaggaagtgtacgtgcaagaaccccaaggctttgaatcttcacacc |
240 |
Q |
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| T |
3218829 |
tagactattcagcaactagatgttaataatgctttcttaaatggcacccttggtgaagaagtatacatgcaacaaccacaaggctttgagtcctcttatc |
3218928 |
T |
|
| Q |
241 |
cttcacttgtttgtaaactcaacaaggctctctatggcctcgagcaagctcctagacaatggtttga |
307 |
Q |
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| || |||||||| |||||||||||| || | ||||||||| | || |||||||| ||||||||||| |
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| T |
3218929 |
catctcttgtttgcaaactcaacaagactttatatggcctcaaacaggctcctaggcaatggtttga |
3218995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 32457955 - 32457892
Alignment:
| Q |
121 |
ctcttgctatttcctacaactagactattcatcaacttgatgtaaataatgccttcttaaatgg |
184 |
Q |
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| T |
32457955 |
ctcttgctatttcctacaagtggcctattcaacagctggatgtcaataatgccttcttaaatgg |
32457892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 39581865 - 39581908
Alignment:
| Q |
264 |
aaggctctctatggcctcgagcaagctcctagacaatggtttga |
307 |
Q |
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|
| T |
39581865 |
aaggctctctatggcctcaagcaagctcctagacaatggtttga |
39581908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 3212882 - 3212848
Alignment:
| Q |
270 |
ctctatggcctcgagcaagctcctagacaatggtt |
304 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
3212882 |
ctctatggcctcaagcaagctcctagacaatggtt |
3212848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 6870297 - 6870254
Alignment:
| Q |
264 |
aaggctctctatggcctcgagcaagctcctagacaatggtttga |
307 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6870297 |
aaggctctctatggcctcaagcaagctcctagacaatggtttga |
6870254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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