View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_high_8 (Length: 383)
Name: NF2076_high_8
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 17248224 - 17248574
Alignment:
| Q |
16 |
atgtaactgaaaaatagcaatgtctctgtcataaaattgtcatgttcaccaatgtacaaacccgacacagttaacatcaaattaatctcctcctgaaaat |
115 |
Q |
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| T |
17248224 |
atgtaactgaaaaatagcaatgtctctgtcataaaattgtcatgttcaccaatgtacaaacccgacacagttaacatcaaattaatctcctcctgaaaat |
17248323 |
T |
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| Q |
116 |
ccatcaactcacataaataccatatatattatacatgaaacatagattgaaagatgccaaaaatgctgtaacgggacaaattaattcatacgacacaacc |
215 |
Q |
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| T |
17248324 |
ccatcaactcacataaataccatatatattatacatgaaacatagattgaaagatgccaaaaatgctgtaacgggacaaattaattcatacgacacaacc |
17248423 |
T |
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| Q |
216 |
aatgtcctcattttacaaaacacaaaggatgtagacttgtaatggcatggacaaccctagtagctgaccaatggtttttgccacacaatccgacatttcg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17248424 |
aatgtcctcattttacaaaacacaaaggatgtagacttgtaatggcatggacaaccctagtagctgaccaatggtttttgccacacaatccgacatttcg |
17248523 |
T |
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| Q |
316 |
ccgctaaaatgttcctgtcctattgtttccattgtcaaatcagtatcatat |
366 |
Q |
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| T |
17248524 |
ccgctaaaatgttcctgtccgattgtttccattgtcaaatcagtatcatat |
17248574 |
T |
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