View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_low_15 (Length: 258)
Name: NF2076_low_15
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_low_15 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 38299978 - 38300227
Alignment:
| Q |
7 |
catttcggataaatcaacttaatcaatcttactatataatgaatctgatagctgcagaatcgctacaaaattttcaaacataatgaaaataaaccctagc |
106 |
Q |
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| T |
38299978 |
catttcggataaatcaatttaatcaatcttactatataatgaatctgatagctgcagaatcgctacaaaattttcaaacataatgaaaataaaccctagc |
38300077 |
T |
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| Q |
107 |
ataaactgcaagattcctgcaaatacttattttattgaaaaactagtattggaataatccaatcaagtagagaagctgactcaagaataatcctttttat |
206 |
Q |
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| T |
38300078 |
ataa-ctgcaagattcctgcaaatacttattttattgaaaaactagtattggaataatccaatcaagtagagaagctgactcaagaataatcctttttct |
38300176 |
T |
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| Q |
207 |
gtatagttaggtatattgtcaacccatccatcttcatttatgaaagatgata |
258 |
Q |
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| T |
38300177 |
gtatagtt-ggtatattgttaagccatctatcttcatttatgaaagatgata |
38300227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 38292412 - 38292542
Alignment:
| Q |
12 |
cggataaatcaacttaatcaatcttactatataatgaatctgatagctgcagaatcgctacaaaattttcaaacataat-gaaaataaaccctagcataa |
110 |
Q |
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| T |
38292412 |
cggataaatcaacttaatcaatcttagtatataatgaatctgataggtgcagaattgctacaaaagtttgaaacataatcaaaaataaaccctagcat-a |
38292510 |
T |
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| Q |
111 |
actgcaagattcctgcaaatacttattttatt |
142 |
Q |
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| T |
38292511 |
actgcaagattcctacatacacttattttatt |
38292542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 38304395 - 38304437
Alignment:
| Q |
216 |
ggtatattgtcaacccatccatcttcatttatgaaagatgata |
258 |
Q |
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| T |
38304395 |
ggtatattgttaagccatccatcttcatttatgaaagatgata |
38304437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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