View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2076_low_19 (Length: 236)

Name: NF2076_low_19
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2076_low_19
NF2076_low_19
[»] chr8 (7 HSPs)
chr8 (7-131)||(12230919-12231043)
chr8 (18-131)||(33327513-33327626)
chr8 (20-119)||(24800355-24800454)
chr8 (53-131)||(31518138-31518216)
chr8 (25-81)||(375406-375462)
chr8 (20-86)||(33545600-33545666)
chr8 (20-120)||(24801337-24801436)
[»] chr4 (11 HSPs)
chr4 (7-131)||(12571483-12571607)
chr4 (20-130)||(53019586-53019696)
chr4 (25-131)||(54349580-54349686)
chr4 (20-133)||(39162790-39162903)
chr4 (20-129)||(35801756-35801865)
chr4 (25-131)||(55440911-55441017)
chr4 (8-129)||(5555577-5555698)
chr4 (8-131)||(46611946-46612069)
chr4 (20-121)||(4947649-4947750)
chr4 (20-121)||(24778202-24778303)
chr4 (25-66)||(24411892-24411933)
[»] chr7 (2 HSPs)
chr7 (25-132)||(4588262-4588369)
chr7 (27-121)||(218402-218496)
[»] chr5 (6 HSPs)
chr5 (25-131)||(20506713-20506819)
chr5 (20-132)||(31813139-31813251)
chr5 (25-131)||(21946750-21946856)
chr5 (20-114)||(10735337-10735431)
chr5 (20-121)||(7015046-7015147)
chr5 (36-131)||(33270738-33270832)
[»] chr1 (10 HSPs)
chr1 (20-131)||(46887222-46887333)
chr1 (20-133)||(46889243-46889356)
chr1 (27-131)||(43043093-43043197)
chr1 (7-130)||(26049269-26049392)
chr1 (49-131)||(30786668-30786750)
chr1 (7-131)||(26051367-26051491)
chr1 (20-66)||(16803056-16803102)
chr1 (36-86)||(20060125-20060175)
chr1 (47-131)||(36729371-36729455)
chr1 (36-131)||(20063179-20063273)
[»] chr2 (7 HSPs)
chr2 (22-131)||(11105466-11105575)
chr2 (7-131)||(27614270-27614394)
chr2 (8-132)||(10374455-10374579)
chr2 (8-127)||(10377003-10377122)
chr2 (27-129)||(19259323-19259425)
chr2 (20-131)||(24574390-24574501)
chr2 (22-131)||(36558536-36558642)
[»] scaffold0316 (1 HSPs)
scaffold0316 (25-131)||(11297-11403)
[»] chr3 (9 HSPs)
chr3 (8-117)||(43543748-43543857)
chr3 (47-129)||(39944908-39944990)
chr3 (20-85)||(17767699-17767764)
chr3 (20-85)||(19069000-19069065)
chr3 (20-68)||(25484813-25484861)
chr3 (8-112)||(49021400-49021504)
chr3 (25-79)||(49237521-49237575)
chr3 (18-86)||(1257680-1257748)
chr3 (25-66)||(36519009-36519050)
[»] scaffold0007 (1 HSPs)
scaffold0007 (36-131)||(197680-197773)


Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 12231043 - 12230919
Alignment:
Q  7 atgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgact 106  Q
    |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  12231043 atgtcgaagtctgtatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaatagaattatgagttcgacc 12230944  T
Q  107 aaatatttcattttttgtgttaaca 131  Q
    |||||||| ||||||||||||||||    
T  12230943 aaatattttattttttgtgttaaca 12230919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 33327626 - 33327513
Alignment:
Q  18 tatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcat 117  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||||||  || | |||||||||||||||||| ||||||||||| |||||||||||    
T  33327626 tatatgttattgatcgaaatccctttgcactttgcagcatgtcgaaataacctatttaccttgttgaaaatagaatcatgagttcgaccaaatatttcat 33327527  T
Q  118 tttttgtgttaaca 131  Q
    ||||||||||||||    
T  33327526 tttttgtgttaaca 33327513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 24800454 - 24800355
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||||| ||| |||||||| |||| |||||||||||||||||||||||| ||| |||||||| ||||||| ||| ||||||||||| |||||||| ||||    
T  24800454 tatgttattgatcgaaatccctttacactttgcagcatgtcgaaataacccatttgccttgtcgaaaatataatcatgagttcgaccaaatattttattt 24800355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 31518216 - 31518138
Alignment:
Q  53 agcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgttaaca 131  Q
    |||||||||||||||| |||||||||||| ||||||||||| || |||||||  |||||||||||||||||||||||||    
T  31518216 agcatgtcgaaataacccatctgccttgtcgaaaatagaatcataagttcgataaaatatttcattttttgtgttaaca 31518138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 375462 - 375406
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  375462 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataactcttctgacttgt 375406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 33545666 - 33545600
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaa 86  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||| || || ||||| ||||    
T  33545666 tatgctcttggtcgaaatccctttgcactttgcagcatgtcgaaataacatatatggcttgtcgaaa 33545600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 24801436 - 24801337
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||||| ||||| || ||| |||||||||||||  ||||||||||||||||||||||||| | | ||||| ||| ||| ||| ||| |||||||||||||    
T  24801436 tatgttattggttgatatccctttgcactttgcttcatgtcgaaataacacatctgccttatcg-aaatataatcatgggttagaccaaatatttcattt 24801338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 12571483 - 12571607
Alignment:
Q  7 atgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgact 106  Q
    |||||||||  | |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||     
T  12571483 atgtcgaagtctgtatgctcttggtcgaaatcactttgcactttgcagcatgtcgaaataacccatctaccttgtcgaaaatagaatcatgagttcgacc 12571582  T
Q  107 aaatatttcattttttgtgttaaca 131  Q
    |||||||||||||||| ||||||||    
T  12571583 aaatatttcattttttatgttaaca 12571607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 53019696 - 53019586
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||    
T  53019696 tatggtcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaatagaatcatgagttcgaccaaatatttcattt 53019597  T
Q  120 tttgtgttaac 130  Q
    || ||||||||    
T  53019596 ttggtgttaac 53019586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 54349580 - 54349686
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgt 124  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| ||||||||||| ||||||||||||||| ||    
T  54349580 tcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcatgagttcgaccaaatatttcatttttggt 54349679  T
Q  125 gttaaca 131  Q
    |||||||    
T  54349680 gttaaca 54349686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 39162903 - 39162790
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||| ||| ||||||||||| |||||||||||||    
T  39162903 tatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataaccaatctgccttgtcgaaaatataatcatgagttcgacaaaatatttcattt 39162804  T
Q  120 tttgtgttaacacc 133  Q
    || ||| |||||||    
T  39162803 ttggtgctaacacc 39162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 35801865 - 35801756
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||| |||  |||||||||  |||||||||||||    
T  35801865 tatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctaccttgtcgaaaatataatcgtgagttcgatcaaatatttcattt 35801766  T
Q  120 tttgtgttaa 129  Q
    || |||||||    
T  35801765 ttggtgttaa 35801756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 55441017 - 55440911
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgt 124  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||| ||||| | |||  |||||||||| ||||||||||||||| ||    
T  55441017 tcttggtcgaaatccctttgtactttgcagcatgtcgaaataatccatctgccttgtcgaaaacataatcgtgagttcgaccaaatatttcatttttggt 55440918  T
Q  125 gttaaca 131  Q
    |||||||    
T  55440917 gttaaca 55440911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 5555698 - 5555577
Alignment:
Q  8 tgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgacta 107  Q
    |||||||| || |||||| |||||| |||||  |||||| ||| |||||||||||||||||||||||||||||| ||||| | ||| || |||||||| |    
T  5555698 tgtcgaagtatgtatgttattggtcaaaatccatttgcattttacagcatgtcgaaataacacatctgccttgtcgaaaacataatcattagttcgacca 5555599  T
Q  108 aatatttcattttttgtgttaa 129  Q
    |||||||||||||| |||||||    
T  5555598 aatatttcatttttggtgttaa 5555577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 46611946 - 46612069
Alignment:
Q  8 tgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgacta 107  Q
    |||||||| ||  ||||| ||||||||||||  ||||||||||| ||| |||||||||||| |||||||||| | ||||| | ||| || |||||||| |    
T  46611946 tgtcgaagtatgcatgttattggtcgaaatccatttgcactttgtagcctgtcgaaataactcatctgccttatcgaaaacataatcataagttcgacca 46612045  T
Q  108 aatatttcattttttgtgttaaca 131  Q
    |||||||||||||| |||||||||    
T  46612046 aatatttcatttttagtgttaaca 46612069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 4947649 - 4947750
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||||| |||||||||||  ||||| |||| |||||||||| ||||||| |||||| |||||  |||||| ||||||||||||||| |||||||||||||    
T  4947649 tatgttattggtcgaaattcctttggacttcgcagcatgtcaaaataactcatctgtcttgtcaaaaatataattatgagttcgacaaaatatttcattt 4947748  T
Q  120 tt 121  Q
    ||    
T  4947749 tt 4947750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 24778202 - 24778303
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||||| || ||||||||| |||| |||||||||||||||||||| ||  ||||||| ||||  ||| || ||| || | |||||| |||||||||||||    
T  24778202 tatgttattagtcgaaatcccttttcactttgcagcatgtcgaaaaaaatcatctgcgttgtctaaattataatcataatttcgaccaaatatttcattt 24778301  T
Q  120 tt 121  Q
    ||    
T  24778302 tt 24778303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 24411933 - 24411892
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaata 66  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  24411933 tcttgatcgaaatttctttgcactttgcagcatgtcgaaata 24411892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 4588369 - 4588262
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgt 124  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| ||||||||||| ||||||||||||||| ||    
T  4588369 tcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcatgagttcgaccaaatatttcatttttggt 4588270  T
Q  125 gttaacac 132  Q
    ||||||||    
T  4588269 gttaacac 4588262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 218496 - 218402
Alignment:
Q  27 ttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttt 121  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| | ||| ||||||||||| |||||||||||||||    
T  218496 ttggtcgaaatccctttgcactttgcaacatgtcgaaataacccatctgccttgttgaaaacataatcatgagttcgaccaaatatttcattttt 218402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 20506819 - 20506713
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgt 124  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||| || |||||||| ||||||||||||||| ||    
T  20506819 tcttggtcgaaatccctttgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggt 20506720  T
Q  125 gttaaca 131  Q
    |||||||    
T  20506719 gttaaca 20506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 31813251 - 31813139
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||| | |||  |||||||||| |||||||||||||    
T  31813251 tatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaacataatcgtgagttcgaccaaatatttcattt 31813152  T
Q  120 tttgtgttaacac 132  Q
    ||  |||||||||    
T  31813151 ttgatgttaacac 31813139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 21946856 - 21946750
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgt 124  Q
    |||||||||||||| |||| |||| || |||||||||||||||| |||||||||| | ||||| | ||| ||||||||||| ||||||||||||||| ||    
T  21946856 tcttggtcgaaatccctttacactctgaagcatgtcgaaataacccatctgccttatcgaaaacataatcatgagttcgaccaaatatttcatttttggt 21946757  T
Q  125 gttaaca 131  Q
    |||||||    
T  21946756 gttaaca 21946750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 10735337 - 10735431
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatattt 114  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||  |||||| ||| |||| ||| || ||||||||    
T  10735337 tatgttcttggtcgaaatctctttgtactttgcagcatgttgaaataactcatctgccttgtcaaaaatataatcatgatttcaaccaaatattt 10735431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 7015046 - 7015147
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||||| |||||| ||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||| ||| |||| |||||| ||||| ||| |||    
T  7015046 tatgttattggtcaaaatccctttacactttgcagcatgtcgaaataacccatctgccttgtcgaaaatataatcatgaattcgaccaaataattccttt 7015145  T
Q  120 tt 121  Q
    ||    
T  7015146 tt 7015147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 33270832 - 33270738
Alignment:
Q  36 atctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgttaaca 131  Q
    |||||||||||||||| |||||||||||| ||| ||| || ||||| | ||||| ||| ||||||||||| || ||||| |||||| || ||||||    
T  33270832 atctctttgcactttggagcatgtcgaaagaacccatatggcttgtcg-aaatataatcatgagttcgaccaagtattttatttttggtattaaca 33270738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 46887222 - 46887333
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| | ||| || |||||||| |||||||||||||    
T  46887222 tatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataactcatctgccttgtcgaaaacataatcattagttcgaccaaatatttcattt 46887321  T
Q  120 tttgtgttaaca 131  Q
    || |||||||||    
T  46887322 ttggtgttaaca 46887333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 46889243 - 46889356
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||| | ||| || ||||| || |||||||||||||    
T  46889243 tatgctcttggtcgaaatctctttgcactttgaaacatgtcgaaataactcatctgccttgtcgaaaacataatcattagttcaaccaaatatttcattt 46889342  T
Q  120 tttgtgttaacacc 133  Q
    || |||||||||||    
T  46889343 ttggtgttaacacc 46889356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 43043197 - 43043093
Alignment:
Q  27 ttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgt 126  Q
    |||||||||||| |||||||||||||||  ||| |||||||| |||||||||||| ||||| | ||| |||||||| || ||||||||||||||| ||||    
T  43043197 ttggtcgaaatccctttgcactttgcagtgtgttgaaataacccatctgccttgtcgaaaacataatcatgagttccaccaaatatttcatttttggtgt 43043098  T
Q  127 taaca 131  Q
    |||||    
T  43043097 taaca 43043093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 26049392 - 26049269
Alignment:
Q  7 atgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgact 106  Q
    |||||||||  | |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||  ||| | ||||||| ||| |||| ||||||     
T  26049392 atgtcgaagtttgtatgctcttggtcgaaatatctttgcactttgcagcatgtcgaaataactcatctaacttatcgaaaatataatcatgatttcgacc 26049293  T
Q  107 aaatatttcattttttgtgttaac 130  Q
    |||||||| |||||| || |||||    
T  26049292 aaatattttatttttggtattaac 26049269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 30786668 - 30786750
Alignment:
Q  49 ttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgttaaca 131  Q
    ||||| |||||||||||||| |||||||||||| ||||||| ||| || |||||||||||||||||||||||| |||||||||    
T  30786668 ttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcataagttcgactaaatatttcatttttggtgttaaca 30786750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 26051491 - 26051367
Alignment:
Q  7 atgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgact 106  Q
    |||||||||  | |||| ||||||||||||||| |||||||||||||  ||||||||| ||| |||||  ||||| ||||||| ||| |||| ||||||     
T  26051491 atgtcgaagtctgtatgctcttggtcgaaatctttttgcactttgcaatatgtcgaaaaaactcatctaacttgtcgaaaatataatcatgatttcgaca 26051392  T
Q  107 aaatatttcattttttgtgttaaca 131  Q
    |||||||| ||||||||| ||||||    
T  26051391 aaatattttattttttgtattaaca 26051367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 16803056 - 16803102
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaata 66  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||    
T  16803056 tatgctcttggtcgaaatcactttgcactttgcagcatgtcgaaata 16803102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 20060125 - 20060175
Alignment:
Q  36 atctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaa 86  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||| ||||    
T  20060125 atctctttgcactttgcagcatgtcgaaataactcatatggcttgtcgaaa 20060175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 36729455 - 36729371
Alignment:
Q  47 ctttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgttaaca 131  Q
    ||||||||||||| |||||||| |||||  ||| | ||||||| ||| |||| |||||| |||||||| |||||| || ||||||    
T  36729455 ctttgcagcatgtagaaataacccatctaacttatcgaaaatataatcatgatttcgaccaaatattttatttttggtattaaca 36729371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 20063179 - 20063273
Alignment:
Q  36 atctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgttaaca 131  Q
    ||||||||| | |||||||||||||||||||||  ||||| ||||| | ||||| ||| |||| |||||| |||||||  |||||| || ||||||    
T  20063179 atctctttgtaatttgcagcatgtcgaaataacctatctgacttgtcg-aaatataatcatgacttcgaccaaatattatatttttggtattaaca 20063273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 11105466 - 11105575
Alignment:
Q  22 tgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttt 121  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| | ||| |||| |||||| |||||||||||||||    
T  11105466 tgttattggtcgaaatccctttgcactttgcagcatgtcgaaataactcatctgccttgtcgaaaagataatcatgatttcgaccaaatatttcattttt 11105565  T
Q  122 tgtgttaaca 131  Q
    ||| ||||||    
T  11105566 tgtattaaca 11105575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 27614270 - 27614394
Alignment:
Q  7 atgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgact 106  Q
    ||||||||| || |||||| ||||||||||||  |||||||||| |||| |||||||||||| |||||||||||| ||||| | ||| |||||||||||     
T  27614270 atgtcgaagtatgtatgttattggtcgaaatccatttgcactttacagcctgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgacc 27614369  T
Q  107 aaatatttcattttttgtgttaaca 131  Q
    |||||||| |||||| |||||||||    
T  27614370 aaatattttatttttggtgttaaca 27614394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 10374579 - 10374455
Alignment:
Q  8 tgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgacta 107  Q
    |||||||| || |||||| ||||||||||| | ||||||||||||||| |||||||||||| ||| |||||| | ||  ||||||| |||| |||||| |    
T  10374579 tgtcgaagtatgtatgttattggtcgaaatttatttgcactttgcagcctgtcgaaataacccatttgccttatcgacgatagaatcatgaattcgacca 10374480  T
Q  108 aatatttcattttttgtgttaacac 132  Q
    |||||||||||||| ||||||||||    
T  10374479 aatatttcatttttggtgttaacac 10374455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 10377122 - 10377003
Alignment:
Q  8 tgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgacta 107  Q
    |||||||| || |||||| ||||||||||||  ||||||||||||||| |||||||||||| |||||||||| | ||  ||||||| |||| |||||| |    
T  10377122 tgtcgaagtatgtatgttattggtcgaaatccatttgcactttgcagcctgtcgaaataactcatctgccttatcgacgatagaatcatgaattcgacca 10377023  T
Q  108 aatatttcattttttgtgtt 127  Q
    |||||||||||||| |||||    
T  10377022 aatatttcatttttggtgtt 10377003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 19259323 - 19259425
Alignment:
Q  27 ttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgt 126  Q
    |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||| | ||| ||||||||||  ||||||| ||||||| ||||    
T  19259323 ttggtcgaaatcgctttgcactttgcggcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgatcaaatattacatttttggtgt 19259422  T
Q  127 taa 129  Q
    |||    
T  19259423 taa 19259425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 24574390 - 24574501
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattt 119  Q
    |||||| |||||| |||||| ||||||||||| ||| | |||||||||||||| |||||||| ||||| | ||| || |||||||| |||||||| ||||    
T  24574390 tatgttattggtcaaaatctatttgcactttgtagcctatcgaaataacacatatgccttgtcgaaaacataatcattagttcgaccaaatattttattt 24574489  T
Q  120 tttgtgttaaca 131  Q
    || |||||||||    
T  24574490 ttggtgttaaca 24574501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 36558642 - 36558536
Alignment:
Q  22 tgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttt 121  Q
    |||| |||||||||||| |||||||||||||| ||||| ||||||||  ||||||||||| |   | | ||| ||||||||||| ||||||||||| |||    
T  36558642 tgttattggtcgaaatccctttgcactttgcaacatgttgaaataaccaatctgccttgtcg---acataatcatgagttcgaccaaatatttcatgttt 36558546  T
Q  122 tgtgttaaca 131  Q
     |||||||||    
T  36558545 ggtgttaaca 36558536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 11297 - 11403
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgt 124  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  ||||||||||||  |||| | |||  |||||||||| ||||||||||||||| ||    
T  11297 tcttggtcgaaatccctttgtactttgcagcatgtcgaaataatccatctgccttgtcaaaaacataatcgtgagttcgaccaaatatttcatttttggt 11396  T
Q  125 gttaaca 131  Q
    |||||||    
T  11397 gttaaca 11403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 43543748 - 43543857
Alignment:
Q  8 tgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgacta 107  Q
    |||||||| || |||||| ||||||||||||  ||||||||||||||| |||||||||||| |||||||||||| ||  ||||||| | ||||||||| |    
T  43543748 tgtcgaagtatgtatgttattggtcgaaatccatttgcactttgcagcctgtcgaaataactcatctgccttgtcgacgatagaatcaggagttcgacca 43543847  T
Q  108 aatatttcat 117  Q
    ||||||||||    
T  43543848 aatatttcat 43543857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 39944908 - 39944990
Alignment:
Q  47 ctttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgttaa 129  Q
    |||||||||||||||||||||| |||||||||||| ||||| | ||| ||||||||||| ||||||||||||||| |||||||    
T  39944908 ctttgcagcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgaccaaatatttcatttttggtgttaa 39944990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17767699 - 17767764
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaa 85  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||||||  |||||| |||||||||    
T  17767699 tatgttcttagtcgaaatccctttgcactttgcaacatgtcgaaataatccatctgacttgttgaa 17767764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 19069000 - 19069065
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaa 85  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||||||  |||||| |||||||||    
T  19069000 tatgttcttagtcgaaatccctttgcactttgcaacatgtcgaaataatccatctgacttgttgaa 19069065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 25484813 - 25484861
Alignment:
Q  20 tatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataac 68  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  25484813 tatgttcttggtcgaaatttctttacactttgcagcatgtcgaaataac 25484861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 49021400 - 49021504
Alignment:
Q  8 tgtcgaagaatatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgacta 107  Q
    |||||||| || |||||  ||||||||||||  ||||||||||||||| |||||||| |||| ||||||||| |  |||| | ||| || |||||||| |    
T  49021400 tgtcgaagtatgtatgtaattggtcgaaatccatttgcactttgcagcctgtcgaaaaaacatatctgccttatcaaaaacataatcattagttcgacca 49021499  T
Q  108 aatat 112  Q
    |||||    
T  49021500 aatat 49021504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 49237575 - 49237521
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgcctt 79  Q
    ||||| |||||||||||||| | ||||||||||||||||||||| ||||| ||||    
T  49237575 tcttgatcgaaatctctttgtattttgcagcatgtcgaaataactcatctacctt 49237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 1257748 - 1257680
Alignment:
Q  18 tatatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaa 86  Q
    |||||| ||||| ||||||||  ||||||||||||||||||| |||||||| ||| || ||||| ||||    
T  1257748 tatatgctcttgctcgaaatccgtttgcactttgcagcatgttgaaataactcatttgacttgtcgaaa 1257680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 36519009 - 36519050
Alignment:
Q  25 tcttggtcgaaatctctttgcactttgcagcatgtcgaaata 66  Q
    ||||||||||||||  |||||||||||||||||||| |||||    
T  36519009 tcttggtcgaaatccatttgcactttgcagcatgtcaaaata 36519050  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 197773 - 197680
Alignment:
Q  36 atctctttgcactttgcagcatgtcgaaataacacatctgccttgttgaaaatagaattatgagttcgactaaatatttcattttttgtgttaaca 131  Q
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T  197773 atctctttacactttgcagcatgtcgaaagaacccatctg-gttgtcg-aaatataatcatgacttcgaccaaatattttatttttggtattaaca 197680  T

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