View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_low_22 (Length: 207)
Name: NF2076_low_22
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 26977432 - 26977257
Alignment:
| Q |
15 |
cagagagctaaaattcaacttaaaataaaaaaggcaaattaaatctcattgtgtttttccaattagagtaaaaaatatatgaagaaaactatactaattt |
114 |
Q |
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| T |
26977432 |
cagagagctaaaattcaacttaaaataaaaaaggcaaattaaatctcattgtgattttccaatttgagtaaaaa-tatatgaagaaaactatactaattt |
26977334 |
T |
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| Q |
115 |
cccttgtgtatgtctttaatgaaaacaaattaaatcaaaaattttaccttgataggtaccaaagtattgatcatatg |
191 |
Q |
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| T |
26977333 |
cccttgtgtatgtctttaatgaaaacaaattaaatcaaaatttttaccttgataggtaccaaagtattgatcatatg |
26977257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 27089251 - 27089352
Alignment:
| Q |
71 |
ttccaattagagtaaaaaatatatgaagaaaactatactaatttcccttgtgtatgtctttaatgaaaacaaattaaatcaaaaattttaccttgatagg |
170 |
Q |
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| T |
27089251 |
ttccaattagagtaaaaa-tatatgaagaaaactatattagttgtccttatgtatctctttaatgaaa-caaa----atcaaaa--tttaccttgatagg |
27089342 |
T |
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| Q |
171 |
taccaaagta |
180 |
Q |
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|||||||||| |
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| T |
27089343 |
taccaaagta |
27089352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 27019120 - 27019045
Alignment:
| Q |
15 |
cagagagctaaaattcaacttaaaataaaaaa-----ggcaaattaaatctcattgtgtttttccaattagagtaa |
85 |
Q |
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| T |
27019120 |
cagagagcaataattcaagttaaaataaaaaataaaagcctaattaaatctcattgtgattttccaattagagtaa |
27019045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 27019044 - 27019010
Alignment:
| Q |
157 |
tttaccttgataggtaccaaagtattgatcatatg |
191 |
Q |
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| T |
27019044 |
tttaccttgagaggtaccaaagtattgatcatatg |
27019010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 34679829 - 34679654
Alignment:
| Q |
15 |
cagagagctaaaattcaacttaaaataaaaaaggcaaattaaatctcattgtgtttttccaattagagtaaaaaatatatgaagaaaactatactaattt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
34679829 |
cagagagctaaaattcaacttaaaataaaaaaggcaaattaaatctcattgtgattttccaattcgagtaaaaa-tatatgaagaaaactatactaattg |
34679731 |
T |
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| Q |
115 |
cccttgtgtatgtctttaatgaaaacaaattaaatcaaaaattttaccttgataggtaccaaagtattgatcatatg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34679730 |
cccttgtgtatgtctttaatgaaaacaaattaaatcaaaatttttaccttgataggtaccaaagtattgatcatatg |
34679654 |
T |
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