View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2076_low_4 (Length: 526)

Name: NF2076_low_4
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2076_low_4
NF2076_low_4
[»] chr3 (13 HSPs)
chr3 (161-419)||(26215162-26215420)
chr3 (148-414)||(35870227-35870491)
chr3 (148-353)||(48266209-48266412)
chr3 (148-297)||(52349726-52349874)
chr3 (1-138)||(26215499-26215637)
chr3 (1-138)||(35870532-35870670)
chr3 (1-138)||(48266453-48266589)
chr3 (84-138)||(52349915-52349969)
chr3 (355-419)||(26297662-26297725)
chr3 (376-419)||(346614-346657)
chr3 (374-419)||(5885643-5885688)
chr3 (374-419)||(10176721-10176766)
chr3 (375-419)||(3744470-3744514)
[»] chr4 (22 HSPs)
chr4 (148-414)||(5430592-5430861)
chr4 (148-419)||(34737793-34738062)
chr4 (148-414)||(53830499-53830767)
chr4 (154-419)||(21802775-21803038)
chr4 (148-419)||(21632763-21633033)
chr4 (148-297)||(2504995-2505143)
chr4 (148-349)||(2500638-2500838)
chr4 (148-287)||(46092312-46092451)
chr4 (148-287)||(46134837-46134976)
chr4 (1-138)||(5430898-5431035)
chr4 (148-329)||(20036251-20036431)
chr4 (1-138)||(53830318-53830458)
chr4 (1-138)||(2500459-2500600)
chr4 (1-138)||(34737611-34737755)
chr4 (1-138)||(46092492-46092634)
chr4 (84-138)||(2504900-2504954)
chr4 (84-138)||(46135017-46135071)
chr4 (327-419)||(26382346-26382438)
chr4 (1-138)||(21632589-21632724)
chr4 (86-138)||(21803082-21803133)
chr4 (375-413)||(27256664-27256702)
chr4 (365-419)||(43942134-43942188)
[»] chr8 (14 HSPs)
chr8 (148-417)||(20171837-20172106)
chr8 (221-419)||(11428184-11428382)
chr8 (148-417)||(8150485-8150752)
chr8 (148-419)||(10186233-10186502)
chr8 (155-419)||(4138196-4138465)
chr8 (1-216)||(918803-919017)
chr8 (1-138)||(11427962-11428099)
chr8 (1-138)||(20172141-20172281)
chr8 (1-136)||(10186542-10186678)
chr8 (1-138)||(4138504-4138641)
chr8 (148-196)||(11428136-11428184)
chr8 (365-419)||(32663985-32664039)
chr8 (379-419)||(9083151-9083191)
chr8 (379-419)||(31686162-31686202)
[»] chr7 (13 HSPs)
chr7 (148-417)||(44393547-44393816)
chr7 (148-414)||(47233816-47234079)
chr7 (148-297)||(25419569-25419717)
chr7 (148-297)||(39066864-39067012)
chr7 (148-297)||(5768058-5768206)
chr7 (1-138)||(44393851-44393992)
chr7 (446-509)||(44699733-44699796)
chr7 (1-137)||(47233635-47233774)
chr7 (84-138)||(5767963-5768017)
chr7 (84-138)||(25419474-25419528)
chr7 (375-419)||(17026576-17026620)
chr7 (375-419)||(39073319-39073363)
chr7 (374-414)||(47140378-47140418)
[»] scaffold0516 (2 HSPs)
scaffold0516 (148-417)||(3127-3395)
scaffold0516 (1-125)||(3430-3555)
[»] chr2 (14 HSPs)
chr2 (148-419)||(41646702-41646969)
chr2 (1-216)||(43564239-43564455)
chr2 (148-297)||(7574085-7574233)
chr2 (148-297)||(16668680-16668828)
chr2 (105-216)||(29455449-29455560)
chr2 (1-138)||(41646520-41646660)
chr2 (84-138)||(7573990-7574044)
chr2 (84-138)||(16668585-16668639)
chr2 (2-72)||(29455575-29455647)
chr2 (375-417)||(29455086-29455128)
chr2 (374-419)||(37904093-37904138)
chr2 (379-419)||(6414355-6414395)
chr2 (375-419)||(22990028-22990072)
chr2 (374-414)||(29752926-29752966)
[»] chr5 (8 HSPs)
chr5 (152-419)||(37301986-37302251)
chr5 (148-414)||(21605061-21605324)
chr5 (148-297)||(36991043-36991191)
chr5 (1-131)||(37301718-37301853)
chr5 (1-129)||(21604884-21605013)
chr5 (1-138)||(36991232-36991376)
chr5 (327-419)||(11386777-11386869)
chr5 (365-419)||(10180445-10180499)
[»] chr1 (12 HSPs)
chr1 (148-409)||(23726019-23726278)
chr1 (148-362)||(22912522-22912735)
chr1 (148-297)||(13786229-13786377)
chr1 (148-297)||(25807766-25807914)
chr1 (1-138)||(22912346-22912484)
chr1 (84-138)||(13786418-13786472)
chr1 (84-138)||(25807670-25807724)
chr1 (1-131)||(39623648-39623778)
chr1 (1-125)||(23725859-23725986)
chr1 (375-419)||(39621652-39621696)
chr1 (324-362)||(23727848-23727886)
chr1 (378-419)||(29679055-29679096)
[»] chr6 (7 HSPs)
chr6 (148-297)||(13433447-13433595)
chr6 (1-138)||(16711926-16712067)
chr6 (84-138)||(13433352-13433406)
chr6 (148-200)||(16712103-16712155)
chr6 (1-131)||(18882819-18882947)
chr6 (365-414)||(16855932-16855981)
chr6 (86-131)||(26721029-26721074)
[»] scaffold0061 (1 HSPs)
scaffold0061 (355-418)||(46366-46427)
[»] scaffold0017 (1 HSPs)
scaffold0017 (355-418)||(152360-152421)
[»] scaffold0316 (1 HSPs)
scaffold0316 (365-419)||(5484-5538)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 161 - 419
Target Start/End: Complemental strand, 26215420 - 26215162
Alignment:
Q  161 aagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaaatggagagt 260  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26215420 aagaatatgaataattttaaaatgtaacccctcgctattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaaatggagagt 26215321  T
Q  261 ttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagtatgagagattagt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26215320 ttttccaattgatggaaaatgaaagattagatagtaaggaatggctagcaaagaatcaagaacaaaagagagccacatggcataagtatgagagattagt 26215221  T
Q  361 tacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26215220 tacaaaagggaaacattggtgaagtaacacataagtaaaatgtagtttagaatacatgt 26215162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 148 - 414
Target Start/End: Complemental strand, 35870491 - 35870227
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  35870491 aagaggattgattaagaatatgaataattttaaaatgtaacctctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 35870392  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    ||||||||||||||||  ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  35870391 gtaaatggagagttttcgcaactgatggaaaatgaaaga-tagatagtaaggaatgactagtaaagaatcaagaagaaaagatagccacatggcataagt 35870293  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaata 414  Q
    |||||||||||||||  ||||||   ||||||| | ||||||||||   ||||||||| ||||||||    
T  35870292 atgagagattagtta-gaaaggggggcattggtaaggtgacacatagaaaaaatgtagcttagaata 35870227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 148 - 353
Target Start/End: Complemental strand, 48266412 - 48266209
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||| ||    
T  48266412 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagt-aa 48266314  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||    
T  48266313 gtaaatggagagtttttgcaactgatggaaaatgaaaga-tagatagtaaggaatgactagtaaagaatcaagaagaaaagatagccacatgacataagt 48266215  T
Q  348 atgaga 353  Q
    ||||||    
T  48266214 atgaga 48266209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 297
Target Start/End: Complemental strand, 52349874 - 52349726
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  52349874 aagaggattgattaagaatataaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 52349775  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  52349774 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 52349726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26215637 - 26215499
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccat-nnnnnnnntgaaatggaagaagaa 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||    
T  26215637 atatccattagagaatacgaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaactataaaaaaaaatgaaatggaagaagaa 26215538  T
Q  100 atgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  26215537 atgagaaggataacataagcaacatatatatgagcttag 26215499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35870670 - 35870532
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||||||||||||  |||||||| |||| ||| ||||||||||||| ||||||||| ||        |||||||||||||||    
T  35870670 atatccattagagaatacgaaaaattatagaaatagaaacatacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaaga 35870572  T
Q  99 aatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  35870571 aatgaaaaggataacataagcaacatatatataagtttag 35870532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 48266589 - 48266453
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||||||||||||||||  |||||||||||| | | | |||||| ||| ||||||||||||| ||||||||| ||        | |||||||||||||||    
T  48266589 atatccattagagaatatgaaaaattatagaaatagaaacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-taaaatggaagaagaaa 48266491  T
Q  101 tgagaaggataacataagcaacatatatataagcttag 138  Q
    |||  |||||||||||||||||||||||||||||||||    
T  48266490 tgaagaggataacataagcaacatatatataagcttag 48266453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 52349969 - 52349915
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52349969 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 52349915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 26297662 - 26297725
Alignment:
Q  355 attagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||| ||| |||||| |||||||| || ||||||||| ||| |||||||||||||||||||    
T  26297662 attagttagaaaggggaaa-attggtgaggtaacacataagcaaagtgtagtttagaatacatgt 26297725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 419
Target Start/End: Complemental strand, 346657 - 346614
Alignment:
Q  376 ttggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||  ||||||||||| |||||||||||||||||||||||    
T  346657 ttggtgagatgacacataagcaaaatgtagtttagaatacatgt 346614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 5885643 - 5885688
Alignment:
Q  374 cattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||||||||||  |||| ||||||||| |||||||||||||    
T  5885643 cattggtgaagtgacatgtaagcaaaatgtaggttagaatacatgt 5885688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 10176721 - 10176766
Alignment:
Q  374 cattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||| | |||||||||| | |||||||||||||||||||||||    
T  10176721 cattggtaaggtgacacataggaaaaatgtagtttagaatacatgt 10176766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 3744470 - 3744514
Alignment:
Q  375 attggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||| |||||||||||| ||| ||||| |||||||||||||    
T  3744470 attggtgaggtgacacataagcaaagtgtaggttagaatacatgt 3744514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 148 - 414
Target Start/End: Complemental strand, 5430861 - 5430592
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactatta---ataaaatggattataacacattcattgtgtaacttccatgaagt 244  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||    
T  5430861 aagatgattgactaagaatatgaataattttaaaatgtaacccctcactattattaataaaatggattataatacattcattgtgtaacttccatgaagt 5430762  T
Q  245 gaagtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcata 344  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5430761 gaagtaaatggagagtttttccaattgatgggaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcata 5430662  T
Q  345 agtatgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaata 414  Q
    ||||||| | ||||||||||||| | ||| ||| ||||||||||||||||| ||||||||||||| ||||    
T  5430661 agtatgaaaaattagttacaaaaagaaaatattagtgaagtgacacataagcaaaatgtagtttataata 5430592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 148 - 419
Target Start/End: Original strand, 34737793 - 34738062
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  34737793 aagaggattgatcaagaatatgaataattttaaaatgtaacccctcattgttaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 34737892  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    ||| |||||| |||||| ||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34737893 gtagatggagtgtttttgcaactgatggaaaatgaaaga-tagattgtacggaatggctagtaaagaatcaagaacaaaagagatccacatggcataagt 34737991  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||||||||||  |||||||  ||||||| | |||||||||| | ||||||||| |||||||||||||    
T  34737992 atgagagattagtta-gaaagggaggcattggtaaggtgacacatatgcaaaatgtaggttagaatacatgt 34738062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 148 - 414
Target Start/End: Original strand, 53830499 - 53830767
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  53830499 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 53830598  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagat---tagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcata 344  Q
    |||||| ||| |||||| |||  |||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  53830599 gtaaatagagtgtttttgcaaccgatggaaaatgaaagatagatagatagtaaggaacggctagtaaagaatcaagaacaaaagatagccacatggcata 53830698  T
Q  345 agtatgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaata 414  Q
    |||||||||||||||||| |||||||   ||| ||| | |||||||||| | ||||||||| ||||||||    
T  53830699 agtatgagagattagtta-aaaaggggggcatcggtaaggtgacacataggaaaaatgtagcttagaata 53830767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 154 - 419
Target Start/End: Complemental strand, 21803038 - 21802775
Alignment:
Q  154 attgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaaat 253  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||    
T  21803038 attgattaagaatatgaacaattttaaaacgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcaagaagtgaagtaaat 21802939  T
Q  254 ggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagtatgaga 353  Q
    | |  |||||| ||| |||| | |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21802938 gaaatgtttttgcaactgataggaaatgaaaga-tagatagtaatgaatggctagtaaagaatcaagaacaaaagagagccacttggcataagtatgaga 21802840  T
Q  354 gattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||||  ||||||   ||||||| | |||||||||| |  |||||||| |||||||||||||    
T  21802839 gattagtta-gaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgt 21802775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 148 - 419
Target Start/End: Original strand, 21632763 - 21633033
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||| ||||||||||||||||||| ||||||||||  |||||||||| |||||||||||||||| ||||  ||||||| ||||||||| || ||||||||    
T  21632763 aagaagattgattaagaatatgaacaattttaaaacataacccctcaatattaataaaatggatcataatgcattcatcgtgtaacttgcaagaagtgaa 21632862  T
Q  248 gtaaatggagagtttttc-caattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataag 346  Q
    ||||||| |  ||||||  ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  21632863 gtaaatgaaatgttttttgcaactgatagaaaatgaaagat-agatagtaaggaatggctagtaaagaatcaagaacaaaagagcgccacttggcataag 21632961  T
Q  347 tatgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||||||||||  ||||||    |||||| | |||||||||| | ||||||||| |||||||||||||    
T  21632962 tatgagagattagtta-gaaaggggggtattggtaaggtgacacataggcaaaatgtagcttagaatacatgt 21633033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 2504995 - 2505143
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  2504995 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 2505094  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  2505095 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 2505143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 148 - 349
Target Start/End: Original strand, 2500638 - 2500838
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||||||||||| |||||||  |||||||||||||||||||| | || |||||||||||||||||||||  ||||||||||| ||||| |||||||||||    
T  2500638 aagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgcattcattgtgcaacttgcatgaagtgaa 2500737  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    |||||||| |  ||||| |||  ||||| |||||||||| || |||||||||||||  |||||  |||||||||||||||||||||||||||||||||||    
T  2500738 gtaaatggtgtatttttgcaacggatgggaaatgaaaga-taaatagtaaggaatgattagtagggaatcaagaacaaaagagagccacatggcataagt 2500836  T
Q  348 at 349  Q
    ||    
T  2500837 at 2500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 46092451 - 46092312
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  46092451 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 46092352  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagat 287  Q
    ||||||||  |||||||  ||  |||||||||||||||||    
T  46092351 gtaaatggcaagtttttgtaaccgatggaaaatgaaagat 46092312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 46134976 - 46134837
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  46134976 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 46134877  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagat 287  Q
    ||||||||  |||||||  ||  |||||||||||||||||    
T  46134876 gtaaatggcaagtttttgtaaccgatggaaaatgaaagat 46134837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 5431035 - 5430898
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||||||||    
T  5431035 atatccattagagaatacgaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaactataaaaaaaatgaaatggaagaagaaa 5430936  T
Q  101 tgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  5430935 tgagaagaataacataagcaacatatatatgagcttag 5430898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 148 - 329
Target Start/End: Complemental strand, 20036431 - 20036251
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||| ||||||||||||| |||||||  |||||||| || ||||| |||||||||||    
T  20036431 aagaggattgattaagaatatgattaattttaaaatgtaactgctcaatattaataaaatgaattataatgcattcattatgcaacttgcatgaagtgaa 20036332  T
Q  248 gtaaatggagag-tttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaaga 329  Q
    |||| || || | ||||| ||  |||||| |||||||||| |||||||||| ||||| |||||||||||| ||||||||||||    
T  20036331 gtaactgaagtgttttttacatctgatgggaaatgaaaga-tagatagtaatgaatgactagtaaagaat-aagaacaaaaga 20036251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 53830318 - 53830458
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacact--cacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||    ||| ||||||||||||| ||||||||| ||        |||||||||||||    
T  53830318 atatccattagagaatacgaaaaattatagaaatagaaacacacataaacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaa 53830416  T
Q  97 gaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  53830417 gaaatgaaaaggataacataagcaacatatatataagcttag 53830458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 2500459 - 2500600
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaa--cacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    |||||||||||||||||  ||||||||||||  ||||||  ||||||| ||||||||||||||||| |||||||||  |        |||||||||||||    
T  2500459 atatccattagagaatatgaaaaattatagaaatagaaaaacacacacacacgaagcttgaagagaaaatcaaaactgtaaaaaaaatgaaatggaagaa 2500558  T
Q  97 gaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||| |||||||| ||||||||||||||| |||||||||    
T  2500559 gaaatgaaaaggataatataagcaacatatatgtaagcttag 2500600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 34737611 - 34737755
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaac------acacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatgga 92  Q
    |||||||||||||||||| ||||||||||||  ||||| |      |||||| ||| ||||||||||||| ||||||||| ||        |||||||||    
T  34737611 atatccattagagaatacgaaaaattatagaaatagaagcgcgcgcacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatgga 34737709  T
Q  93 agaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  34737710 agaagaaatgaaaaggataacataagcaacatatatataagcttag 34737755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 46092634 - 46092492
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg----aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaag 94  Q
    ||||| |||||||||||| ||||||||||||  ||||||||||||| |||     |||||| |||||| ||||||||| ||        |||||||||||    
T  46092634 atatctattagagaatacgaaaaattatagaaatagaaacacacacacacacacaaagcttaaagagaaaatcaaaactatcaaaaaa-tgaaatggaag 46092536  T
Q  95 aagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  46092535 aagaaatgaaaaggataacataagcaacatatatataagcttag 46092492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 2504900 - 2504954
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2504900 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 2504954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 46135071 - 46135017
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46135071 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 46135017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 26382438 - 26382346
Alignment:
Q  327 agagagccacatggcataagtatgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||||||||||||||||||||||||| |||||||| ||  | | ||||||| ||||||  |||| ||||||||| |||||||||||||    
T  26382438 agagagccacatggcataagtatgagagattggttacaaagggagagctttggtgaggtgacatgtaaggaaaatgtagcttagaatacatgt 26382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 21632589 - 21632724
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||||||||||||||||| ||| |||||||| | | | ||| || ||| ||||||||||||| || |||||| ||        | |||||||||||||||    
T  21632589 atatccattagagaatacgaaatattatagaaatagaaacatacacacaaagcttgaagagaaaagcaaaactatcaaaaaa-taaaatggaagaagaaa 21632687  T
Q  101 tgagaaggataacataagcaacatatatataagcttag 138  Q
    ||| ||||||||||||||||||| ||| ||||||||||    
T  21632688 tgaaaaggataacataagcaacacata-ataagcttag 21632724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 21803133 - 21803082
Alignment:
Q  86 aaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||    
T  21803133 aaatggaagaagagatgaaaaggataacataagcaacacata-ataagcttag 21803082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 413
Target Start/End: Complemental strand, 27256702 - 27256664
Alignment:
Q  375 attggtgaagtgacacataagtaaaatgtagtttagaat 413  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  27256702 attggtgaggtgacacataagtaaagtgtagtttagaat 27256664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 43942188 - 43942134
Alignment:
Q  365 aaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||| | ||||||||||||||||  |||| ||||||||| |||||||||||||    
T  43942188 aaaggggatcattggtgaagtgacatgtaagcaaaatgtagattagaatacatgt 43942134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 148 - 417
Target Start/End: Complemental strand, 20172106 - 20171837
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20172106 aagatgattgactaagaatatgaataattttaaaatgaaacccctcactattaataaaatggattataatacattcattgtgtaacttccatgaagtgaa 20172007  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  20172006 gtaaatagagagtttttccaattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatcaagaacaaaagagagccacatgacataagt 20171907  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacat 417  Q
    || | | ||||||||||||| | ||| ||| ||||||||||||||||| ||||||||||||| |||||||    
T  20171906 ataaaaaattagttacaaaaagaaaatattagtgaagtgacacataagcaaaatgtagtttaaaatacat 20171837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 221 - 419
Target Start/End: Original strand, 11428184 - 11428382
Alignment:
Q  221 ttcattgtgtaacttccatgaagtgaagtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaag 320  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11428184 ttcattgtgtaacttccatgaagtgaagtaaatggatagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaag 11428283  T
Q  321 aacaaaagagagccacatggcataagtatgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||| |||| |||||||||||| ||||||||| |||||||||||||    
T  11428284 aacaaaagagagccacaaggcataagtatgaaaaattagttacaaaagggaaatattagtgaggtgacacataagcaaaatgtagcttagaatacatgt 11428382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 148 - 417
Target Start/End: Original strand, 8150485 - 8150752
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||  ||| |||||||    
T  8150485 aagaggactgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaattgattataatgcattcattgtgtaactcgcataaagtgaa 8150584  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    |||||||||| |||||| ||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  8150585 gtaaatggagtgtttttgcaactgatgggaaatgaaaga-tagatagtaagaaatggctagtaaagaatcaagaacaaaagtgagtcacatggcataagt 8150683  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacat 417  Q
    |||||||||||||||  ||||||   ||||||| | |||||||||| | ||||||||| |||||||||||    
T  8150684 atgagagattagtta-gaaaggggggcattggtaaggtgacacatatgcaaaatgtagcttagaatacat 8150752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 148 - 419
Target Start/End: Complemental strand, 10186502 - 10186233
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| || |||||||     
T  10186502 aagaggattgattaagaatatgaacaattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcaagaagtgag 10186403  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    ||||||| |  |||||| ||| |||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  10186402 gtaaatgaaatgtttttgcaactgataggaaatgaaaga-tagatagtaaggaatgactagtaaagaatcaagaacaaaagagagtcacttggcataagt 10186304  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    | |||| ||||||||  ||||||   ||||||| | |||||||||| |  |||||||| |||||||||||||    
T  10186303 aagagatattagtta-gaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgt 10186233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 155 - 419
Target Start/End: Complemental strand, 4138465 - 4138196
Alignment:
Q  155 ttgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaaatg 254  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||||||| ||||||||  ||||||||||||||||| || |||||||||||||||    
T  4138465 ttgattaagaatatgaacaattttaaaacgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcaagaagtgaagtaaatg 4138366  T
Q  255 gagagtttttccaattgatggaaaatgaaagat------tagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagta 348  Q
     |  |||||| |||  ||| | |||||||||||      |||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4138365 aaatgtttttgcaacggataggaaatgaaagatgaaagatagatagtagagaatggctagtaaagaatcaagaacaaaagagagccacttggcataagta 4138266  T
Q  349 tgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||||||||  ||||||   ||||||| | |||||||||| |  |||||||| |||||||||||||    
T  4138265 tgagagattagtta-gaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgt 4138196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 918803 - 919017
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||||||||||||||||| |||||||||||| | | | | |||| ||| || |||||||||| ||||||||| ||        |||||||||||||||||    
T  918803 atatccattagagaatacgaaaaattatagaaatagaaatacacacactaaacttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaagaaa 918901  T
Q  101 tgagaaggataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaacccctcactatta 200  Q
    ||| |||||||||||| |||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  918902 tgaaaaggataacatatgcaatatatatataagcttagaaaaaaatgaagaggattgattaagaatatgaataattttaaaatgtaacccctcaatatta 919001  T
Q  201 ataaaatggattataa 216  Q
    ||||||||||||||||    
T  919002 ataaaatggattataa 919017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11427962 - 11428099
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||        |||||||||||||||||    
T  11427962 atattcattagagaatacgaaaaattatagatagaaacacacactcacgaagcttgaagagaaaatcaaaactataaaaaaaatgaaatggaagaagaaa 11428061  T
Q  101 tgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11428062 tgagaaggataacataagcaacatatatatgagcttag 11428099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 20172281 - 20172141
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccat---nnnnnnnntgaaatggaagaag 97  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||           ||||||||||||||    
T  20172281 atatccattagagaatacgaaaaattatagatagaaacacacactcacgaagtttgaagagagaatcaaaactataaaaaaaaaaatgaaatggaagaag 20172182  T
Q  98 aaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  20172181 aaatgagaaggataacataagcaacatatatatgagcttag 20172141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 10186678 - 10186542
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||| ||||||||  ||||||||||||| ||| ||||||||||||| || |||||| ||        |||||||||||| ||    
T  10186678 atatccattagagaatacgaaatattatagaaatagaaacacacacacacaaagcttgaagagaaaagcaaaactatcaaaaaaatgaaatggaagagga 10186579  T
Q  99 aatgagaaggataacataagcaacatatatataagctt 136  Q
    ||||| ||||||||||||||||||| ||| ||||||||    
T  10186578 aatgaaaaggataacataagcaacacata-ataagctt 10186542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4138641 - 4138504
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||| ||||||||  ||||||||||||| ||| | ||||||||||| || |||||| ||        |||||||||||||||    
T  4138641 atatccattagagaatacgaaatattatagaaatagaaacacacacacacaaggcttgaagagaaaagcaaaactatcaaaaaa-tgaaatggaagaaga 4138543  T
Q  99 aatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||| ||||||||||||||||||| ||| ||||||||||    
T  4138542 aatgaaaaggataacataagcaacacata-ataagcttag 4138504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 11428136 - 11428184
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcact 196  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  11428136 aagatgattgactaagaatatgaataattttaaaatgtaacccctcact 11428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 32664039 - 32663985
Alignment:
Q  365 aaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||| |||||||| |||||||||||| ||| |||||||||||||||||||    
T  32664039 aaagggaaaaattggtgaggtgacacataagcaaagtgtagtttagaatacatgt 32663985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 9083151 - 9083191
Alignment:
Q  379 gtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||| |||||||||||| ||| |||||||||||||||||||    
T  9083151 gtgaggtgacacataagcaaagtgtagtttagaatacatgt 9083191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 31686202 - 31686162
Alignment:
Q  379 gtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||| |||||||||||| || ||||||||||||||||||||    
T  31686202 gtgaggtgacacataagcaatatgtagtttagaatacatgt 31686162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 148 - 417
Target Start/End: Complemental strand, 44393816 - 44393547
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44393816 aagatgattgactaagaatatgaataattttaaaatgaaacccctcactattaataaaatggattataatacattcattgtgtaacttccatgaagtgaa 44393717  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  44393716 gtaaatagagagtttttccaattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatcaagaacaaaagagagccacatgacataagt 44393617  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacat 417  Q
    || | | ||||||||||||| | ||| ||| ||||||||||||||||| ||||||||||||| |||||||    
T  44393616 ataaaaaattagttacaaaaagaaaatattagtgaagtgacacataagcaaaatgtagtttaaaatacat 44393547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 148 - 414
Target Start/End: Original strand, 47233816 - 47234079
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  47233816 aagaggattgattaagaatatgaataattttaaaatgtaaccccttaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 47233915  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    ||||||| || |||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  47233916 gtaaatgaagtgtttttgcaactgatggaaaatgaaaga-tagatagtaaggaatgactagtaaagaatcaagaacaaaagatagccacatgacataagt 47234014  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaata 414  Q
    ||||||||||||||| ||| |||   ||||||| |||||||||||| | ||||| ||||||||||||    
T  47234015 atgagagattagttagaaagggg--gcattggtaaagtgacacataggaaaaatatagtttagaata 47234079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 25419569 - 25419717
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  25419569 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 25419668  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  25419669 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 25419717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 39066864 - 39067012
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  39066864 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 39066963  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  39066964 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 39067012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 5768058 - 5768206
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||| |||||||||||    
T  5768058 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaattgattataatgcattcattgtgtaacttgcatgaagtgaa 5768157  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  5768158 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 5768206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44393992 - 44393851
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccat----nnnnnnnntgaaatggaagaa 96  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||            |||||||||||||    
T  44393992 atatccattagagaatacgaaaaattatagatagaaacacacactcacgaagtttgaagagagaatcaaaactataaaaaaaaaaaatgaaatggaagaa 44393893  T
Q  97 gaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  44393892 gaaatgagaaggataacataagcaacatatatatgagcttag 44393851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 446 - 509
Target Start/End: Complemental strand, 44699796 - 44699733
Alignment:
Q  446 gaggcgtgggttcaaattatattgttggtccatcaacccttttgaaacgttgatcgatctatct 509  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  44699796 gaggcgtgggttcaaattatattgttgatccatcaacccttttgaaacgttgatcgatcaatct 44699733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 47233635 - 47233774
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg--aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    |||||||||||||||||  |||| |||||||  ||||||||||||| |||   ||||||||||||| ||||||||| ||        |||||||||||||    
T  47233635 atatccattagagaatatgaaaagttatagaaatagaaacacacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaa 47233733  T
Q  97 gaaatgagaaggataacataagcaacatatatataagctta 137  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  47233734 gaaatgaaaaggataatataagcaacatatatataagctta 47233774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 5767963 - 5768017
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5767963 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 5768017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 25419474 - 25419528
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25419474 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 25419528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 17026620 - 17026576
Alignment:
Q  375 attggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||| |||||||||||| ||| ||||| |||||||||||||    
T  17026620 attggtgaggtgacacataagcaaagtgtagcttagaatacatgt 17026576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 39073319 - 39073363
Alignment:
Q  375 attggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||| |||||||||||| ||| ||||| |||||||||||||    
T  39073319 attggtgaggtgacacataagcaaagtgtaggttagaatacatgt 39073363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 47140418 - 47140378
Alignment:
Q  374 cattggtgaagtgacacataagtaaaatgtagtttagaata 414  Q
    ||||||||| |||||||||||| ||| ||||||||||||||    
T  47140418 cattggtgaggtgacacataagcaaagtgtagtttagaata 47140378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 148 - 417
Target Start/End: Complemental strand, 3395 - 3127
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||  || |||||||| ||||| |||||||||||    
T  3395 aagaggattgattaagaatatgaataattttaaaatgtaaccgcttaatattaataaaatggattataattcaatcattgtgcaacttgcatgaagtgaa 3296  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    ||||||| || |||||| ||| |||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3295 gtaaatgaagtgtttttgcaactgatgggaaatgaaagataa-atagtaaagaatggctagtaaagaatcaagaacaaaagagagccacatgacataagt 3197  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacat 417  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||    
T  3196 atgagagattagttacaaaagggagacgttggtgaagtgacacataagtaaaatgtagtttaaaatacat 3127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 3555 - 3430
Alignment:
Q  1 atatccattagagaatacaaaaaattatag--atagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||| |||||||||||||| ||||  |||||||||||||| ||| |||| |||||||| || |||||  ||        |||||||||||||||    
T  3555 atatccattaaagaatacaaaaaataatagaaatagaaacacacacacacaaagcctgaagagaaaaacaaaattat-caaaaaatgaaatggaagaaga 3457  T
Q  99 aatgagaaggataacataagcaacata 125  Q
    ||| | |||||| ||||||||||||||    
T  3456 aattaaaaggatgacataagcaacata 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 148 - 419
Target Start/End: Original strand, 41646702 - 41646969
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| |||||| ||||    
T  41646702 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattaaaatacattcattgtgtaacttgcatgaaatgaa 41646801  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    |||||||||| |||||| |||  |||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41646802 gtaaatggagtgtttttgcaaccgatggaaaatgaaagat----aagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagt 41646897  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||||||||| ||| |||  |||||||| | |||||||||| | ||||||||| ||| |||||||||    
T  41646898 atgagagattagttaaaaaggggggacattggtaaggtgacacataggaaaaatgtagcttataatacatgt 41646969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 43564455 - 43564239
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||| ||| ||||||||||||| ||||||||| ||        |||||||||||||||    
T  43564455 atatccattagagaatacgaaaaattatagaaatagaaacacacacacacaaagcttgaagagaaaatcaaaactatcgaaaaa-tgaaatggaagaaga 43564357  T
Q  99 aatgagaaggataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaacccctcactat 198  Q
    ||||| ||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  43564356 aatgaaaaggataacataagcaacatatatataagcttagaaaaaaatgaaaaggattgattaagaatatgaataattttaaaatgtaacccctcaatat 43564257  T
Q  199 taataaaatggattataa 216  Q
    ||||||||||||||||||    
T  43564256 taataaaatggattataa 43564239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 7574085 - 7574233
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  7574085 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 7574184  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  7574185 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 7574233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 16668680 - 16668828
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| |||||||| |||||||||||    
T  16668680 aagaggattgatcaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattatgtaacttgcatgaagtgaa 16668779  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  16668780 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 16668828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 29455560 - 29455449
Alignment:
Q  105 aaggataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataa 204  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||    
T  29455560 aaggataacataagcaacatatatataagcttagaaaaaaatgaagaggattaattaagaatatgaataattttaaaatgtaacccctcgatattaataa 29455461  T
Q  205 aatggattataa 216  Q
    ||||||||||||    
T  29455460 aatggattataa 29455449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 41646520 - 41646660
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg--aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    |||||||||||| ||||| ||||||||||||  ||||||||||||| |||   ||||||||||||| ||||||||| ||        |||||||||||||    
T  41646520 atatccattagaaaatacgaaaaattatagaaatagaaacacacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaagaa 41646618  T
Q  97 gaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  41646619 gaaatgaaaaggacaacataagcaacatatatataagcttag 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 7573990 - 7574044
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7573990 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 7574044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 16668585 - 16668639
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16668585 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 16668639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 29455647 - 29455575
Alignment:
Q  2 tatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaac 72  Q
    ||||||||||||||||| ||||||||||||  ||||||| ||||| ||| ||||||||||||| |||||||||    
T  29455647 tatccattagagaatacgaaaaattatagaaatagaaacgcacacacacaaagcttgaagagaaaatcaaaac 29455575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 29455128 - 29455086
Alignment:
Q  375 attggtgaagtgacacataagtaaaatgtagtttagaatacat 417  Q
    ||||||||||||||||||| | ||||||||| |||||||||||    
T  29455128 attggtgaagtgacacataggaaaaatgtagcttagaatacat 29455086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 37904093 - 37904138
Alignment:
Q  374 cattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||| |||||||||| | ||||||||| |||||||||||||    
T  37904093 cattggtgaggtgacacataggaaaaatgtagcttagaatacatgt 37904138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 6414355 - 6414395
Alignment:
Q  379 gtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||| |||||||||||| ||| |||||||||||||||||||    
T  6414355 gtgaggtgacacataagcaaagtgtagtttagaatacatgt 6414395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 22990028 - 22990072
Alignment:
Q  375 attggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||| |||||||||||| ||||||||  |||||||||||||    
T  22990028 attggtgaggtgacacataagcaaaatgtacgttagaatacatgt 22990072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 29752966 - 29752926
Alignment:
Q  374 cattggtgaagtgacacataagtaaaatgtagtttagaata 414  Q
    ||||||||| |||||||||||| ||| ||||||||||||||    
T  29752966 cattggtgaggtgacacataagcaaagtgtagtttagaata 29752926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 5e-85; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 152 - 419
Target Start/End: Original strand, 37301986 - 37302251
Alignment:
Q  152 ggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaa 251  Q
    |||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  37301986 ggattgattaagaatatgaataattttaaaatgtaaccctccattattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaa 37302085  T
Q  252 atggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagtatga 351  Q
    |||||| |||||| ||| |||||| |||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  37302086 atggagtgtttttgcaaatgatgggaaatgaaaga-tagattgtacggaatggctagtaaagaatcaagaacaaaagagatccacatggcataagtataa 37302184  T
Q  352 gagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||||||  ||||| |  ||||||| | |||||||||| | ||||||||| |||||||||||||    
T  37302185 gagattagtta-gaaaggaagtcattggtaaggtgacacatatgcaaaatgtaggttagaatacatgt 37302251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 148 - 414
Target Start/End: Original strand, 21605061 - 21605324
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  21605061 aagaggattgattaagaatatgaataattttaaaatttaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 21605160  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    ||||||| || |||||| ||    ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||    
T  21605161 gtaaatgaagtgtttttgcagccaatggaaaatgaaaga-tagatagtaaggaatgactaataaagaatcaagaacaaaagatagccacatgacataagt 21605259  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaata 414  Q
    ||||||||||||||| ||| |||    |||||| | |||||||||| | ||||||||| ||||||||    
T  21605260 atgagagattagttagaaagggg--gtattggtaaggtgacacataggaaaaatgtagcttagaata 21605324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 297
Target Start/End: Complemental strand, 36991191 - 36991043
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||| |||||||||||    
T  36991191 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcatgaagtgaa 36991092  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  36991091 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 36991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37301718 - 37301853
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg----aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaag 94  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||| |||     ||||||||||||| ||||||||| ||        |||||||||||    
T  37301718 atatccattagagaatacgaaaaattatagaaatagaaacacacacacacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-tgaaatggaag 37301816  T
Q  95 aagaaatgagaaggataacataagcaacatatatata 131  Q
    ||||||||| |||||||||||||||||||||||||||    
T  37301817 aagaaatgaaaaggataacataagcaacatatatata 37301853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 21604884 - 21605013
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||  || |||||| || ||| ||||||||| ||        |||||||||||||||    
T  21604884 atatccattagagaatacgaaaaattatagaaatagaaacacacacaaacaaagcttaaaaagaaaatcaaaactatcaaaaaa-tgaaatggaagaaga 21604982  T
Q  99 aatgagaaggataacataagcaacatatata 129  Q
    ||||| |||||||||||||||||||||||||    
T  21604983 aatgaaaaggataacataagcaacatatata 21605013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36991376 - 36991232
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacg------aagcttgaagagagaatcaaaaccatnnnnnnnntgaaatgga 92  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||| |||       |||||| |||||| ||||||||| ||        |||||||||    
T  36991376 atatctattagagaatacaaaaaattatagaaatagaaacacacacacacacacacaaagcttaaagagaaaatcaaaactatcaaaaaa-tgaaatgga 36991278  T
Q  93 agaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  36991277 agaagaaatgaaaaggataacataagcaacatatatataagcttag 36991232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 11386869 - 11386777
Alignment:
Q  327 agagagccacatggcataagtatgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||||||||||||||||||||||||||||| |||||||| ||  |   ||||||| ||||||  |||| ||||||||| |||||||||||||    
T  11386869 agagagccacatggcataagtatgagagattggttacaaagggagagttttggtgaggtgacatgtaaggaaaatgtagcttagaatacatgt 11386777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 10180499 - 10180445
Alignment:
Q  365 aaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||  ||||||||| |||||||||||| ||||||||| |||||||||||||    
T  10180499 aaagggaggcattggtgaggtgacacataagcaaaatgtaggttagaatacatgt 10180445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 7e-72; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 148 - 409
Target Start/End: Original strand, 23726019 - 23726278
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    |||||||||||||||||||||||||||||| |||||||||||  | | |||||||||||||||||||||  ||||||||||| ||||| |||||| ||||    
T  23726019 aagaggattgattaagaatatgaataattt-aaaatgtaaccgtttaatattaataaaatggattataattcattcattgtgcaacttgcatgaaatgaa 23726117  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagt 347  Q
    ||||||| || |||||| |||  |||| |||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||| ||  |||||||    
T  23726118 gtaaatgaagtgtttttgcaacagatgaaaaatgaaagat-agatagtaaagaatgaccagtaaagaatcaagaacaaaagagagccatataacataagt 23726216  T
Q  348 atgagagattagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagttta 409  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||  |||||||| ||||    
T  23726217 atgagagattagttacaaaagggagacgctggtgaagtgacacataaacaaaatgtaattta 23726278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 148 - 362
Target Start/End: Original strand, 22912522 - 22912735
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||  |||||||| |||||| | || ||||||||    
T  22912522 aagaggattgattaagaatatgaataattttaaaatgtaactcctca-tattaataaaatggtttataatgcattcattttgtaacatgcaagaagtgaa 22912620  T
Q  248 gtaaatggagagtttttccaat-tgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataag 346  Q
    |||||||||| |||| | |||  |||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22912621 gtaaatggagtgtttctgcaacctgatgggaaatgaaagataa-ataataaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataag 22912719  T
Q  347 tatgagagattagtta 362  Q
    ||||||||||||||||    
T  22912720 tatgagagattagtta 22912735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 148 - 297
Target Start/End: Complemental strand, 13786377 - 13786229
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  13786377 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 13786278  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  13786277 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 13786229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 25807766 - 25807914
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  25807766 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 25807865  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    ||||||||| |||||||  |||||||||||||||||||| ||||||||||    
T  25807866 gtaaatggaaagtttttgtaattgatggaaaatgaaaga-tagatagtaa 25807914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 22912346 - 22912484
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    |||||||||||||||||| ||||||||||||  |||||||||| || ||| ||||||||||||| ||||||||| ||        | |||||||||||||    
T  22912346 atatccattagagaatacgaaaaattatagaaatagaaacacagacacacaaagcttgaagagaaaatcaaaactatcaaaaaa-taaaatggaagaaga 22912444  T
Q  99 aatgagaaggataacataagcaacatatatataagcttag 138  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  22912445 aatgaaaagaataacataagcaacatatatataagcttag 22912484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 13786472 - 13786418
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13786472 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 13786418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 25807670 - 25807724
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  25807670 tgaaatggaagaagaaatgaaaaggataacataagaaacatatatataagcttag 25807724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 39623778 - 39623648
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaagaaa 100  Q
    ||||| ||| ||||||||  ||||||||||| | | | |||||| ||||||||||||| ||| ||||||||| ||        |||||||||||||||||    
T  39623778 atatctattcgagaatacggaaaattatagaaatagaaacacacacacgaagcttgaacagaaaatcaaaactatcaaaaaaatgaaatggaagaagaaa 39623679  T
Q  101 tgagaaggataacataagcaacatatatata 131  Q
    ||| |||||||| |||||||| |||||||||    
T  39623678 tgaaaaggataaaataagcaatatatatata 39623648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 23725859 - 23725986
Alignment:
Q  1 atatccattagagaatacaaaaaattatag--atagaaacacacactc--acgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaa 96  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |  |||||||||||||| | ||||||||  ||        |||||||||||||    
T  23725859 atatccattagagaatacaaaaaattatagaaatagaaacacacacacaaacgaagcttgaagaaaaaatcaaaataat-aaaaaaatgaaatggaagaa 23725957  T
Q  97 gaaatgagaaggataacataagcaacata 125  Q
    ||||||| |||||| ||||||| ||||||    
T  23725958 gaaatgaaaaggatgacataagaaacata 23725986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 39621696 - 39621652
Alignment:
Q  375 attggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||    
T  39621696 attggtgaggtgacacataagcaaagtgtagtttagaatacatgt 39621652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 23727848 - 23727886
Alignment:
Q  324 aaaagagagccacatggcataagtatgagagattagtta 362  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  23727848 aaaagagagccacttggcataagtatgagagattggtta 23727886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 29679096 - 29679055
Alignment:
Q  378 ggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    ||||| |||||||||||| ||| |||||||||||||||||||    
T  29679096 ggtgaggtgacacataagcaaagtgtagtttagaatacatgt 29679055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 13433447 - 13433595
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactattaataaaatggattataacacattcattgtgtaacttccatgaagtgaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  13433447 aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaa 13433546  T
Q  248 gtaaatggagagtttttccaattgatggaaaatgaaagattagatagtaa 297  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||||    
T  13433547 gtaaatggagagtttttgtaactgatggaaaatgaaaga-tagatagtaa 13433595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 16711926 - 16712067
Alignment:
Q  1 atatccattagagaatacaaaaaattatagatagaaacacacactcacgaagcttgaagagagaatcaaaaccat-----nnnnnnnntgaaatggaaga 95  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||              |||||||||||    
T  16711926 atatccatttgagaatacgaaaaattatagatagaaacacacactcacgaagcttgatgagaaaatcaaaactatcaacccaaaaagaagaaatggaaga 16712025  T
Q  96 agaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    || ||||| |||||||||||||||||||||||||| |||||||    
T  16712026 ag-aatgaaaaggataacataagcaacatatatatgagcttag 16712067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 13433352 - 13433406
Alignment:
Q  84 tgaaatggaagaagaaatgagaaggataacataagcaacatatatataagcttag 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13433352 tgaaatggaagaagaaatgaaaaggataacataagcaacatatatataagcttag 13433406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 16712103 - 16712155
Alignment:
Q  148 aagaggattgattaagaatatgaataattttaaaatgtaacccctcactatta 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16712103 aagatgattgattaagaatatgaataattttaaaatgtaacccctcactatta 16712155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 18882947 - 18882819
Alignment:
Q  1 atatccattagagaatacaaaaaattataga--tagaaacacacactcacgaagcttgaagagagaatcaaaaccatnnnnnnnntgaaatggaagaaga 98  Q
    ||||| ||| ||||||||  |||||||||||  |||||||||||||    |||||||||| ||| ||||||||| ||        |||||||||||||||    
T  18882947 atatctattcgagaatacggaaaattatagaaatagaaacacacac----gaagcttgaacagaaaatcaaaactatcaaaaaaatgaaatggaagaaga 18882852  T
Q  99 aatgagaaggataacataagcaacatatatata 131  Q
    ||||| |||||||| |||||||| |||||||||    
T  18882851 aatgaaaaggataaaataagcaatatatatata 18882819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 16855981 - 16855932
Alignment:
Q  365 aaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaata 414  Q
    |||||| | ||||||||||||||||  |||| ||||||||||||||||||    
T  16855981 aaaggggatcattggtgaagtgacatgtaagcaaaatgtagtttagaata 16855932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 26721029 - 26721074
Alignment:
Q  86 aaatggaagaagaaatgagaaggataacataagcaacatatatata 131  Q
    ||||| |||||||||| | ||||||||||||||||||| |||||||    
T  26721029 aaatgaaagaagaaattaaaaggataacataagcaacaaatatata 26721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 46366 - 46427
Alignment:
Q  355 attagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatg 418  Q
    |||||||| ||| ||||||  ||||||| |||||||||||||||| ||||| ||||||||||||    
T  46366 attagttagaaaggggaaa--ttggtgaggtgacacataagtaaagtgtagcttagaatacatg 46427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 152421 - 152360
Alignment:
Q  355 attagttacaaaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatg 418  Q
    |||||||| ||| ||||||  ||||||| |||||||||||||||| ||||| ||||||||||||    
T  152421 attagttagaaaggggaaa--ttggtgaggtgacacataagtaaagtgtagcttagaatacatg 152360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 5484 - 5538
Alignment:
Q  365 aaagggaaacattggtgaagtgacacataagtaaaatgtagtttagaatacatgt 419  Q
    |||||| ||||||||| | |||||||||| | ||||||||| |||||||||||||    
T  5484 aaaggggaacattggtaaggtgacacataggaaaaatgtaggttagaatacatgt 5538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University