View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_low_6 (Length: 449)
Name: NF2076_low_6
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_low_6 |
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| [»] scaffold0110 (2 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 22745 - 22317
Alignment:
| Q |
1 |
caccataaacaatgggatgaaggaacctgtggaaatttataaacaccttaaatatacactaaaaggacaaaatttaggtacaattcttcgttcttatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22745 |
caccataaacaatgggatgaaggaacctgtggaaatttataaacaccttaaatatatagtaaaatgacaaaatttaggtacaattcttcgttcttatgat |
22646 |
T |
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| Q |
101 |
gccgtttgtgtttttctagttggataacaacaccaacattttatatgaaactgcagttaagtt-cgtcttgcacaaaatgagtaaataagcattttggtc |
199 |
Q |
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| T |
22645 |
gccgtttgtgtttttctagttggataacaacaccaacattttatatgaaactgcacttaagtttcgtcttccacaaaatgagtaaataagcattttggtt |
22546 |
T |
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| Q |
200 |
cttgaagttacgtagatcgagcaatttagtcttttaattatacgatataacaaattagtcccttaaattaagaatatcaatcagttaacaatataacatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22545 |
cttgaagttacgtagatcgagcaatttagtcttttaatttaacgatataataaattagtcccttaaattaagaatatcaatcagttaacgatataacatg |
22446 |
T |
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| Q |
300 |
tattttgatttaaatagtcttttgctacatcaaagcgagcatagaatcgttgtaattgtggagcaaaatttgaataatttaccaaattgattgatagttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
22445 |
tattttgatttaaatagtcttttgctacatcaaagcaagcatagaatcgttctaattgtggagcaaaatttgaataatcgaccaaattaattgatagttt |
22346 |
T |
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| Q |
400 |
gcaattcaagggactgaattgctattttgcaaattt |
435 |
Q |
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| T |
22345 |
gcaat-------actgaattgctattttgcaaattt |
22317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30663 - 30612
Alignment:
| Q |
1 |
caccataaacaatgggatgaaggaacctgtggaaatttataaacaccttaaa |
52 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||| |||||| |
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| T |
30663 |
caccataaacaaggggatgaatgaacctgtggaaatttataaacaacttaaa |
30612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 41513889 - 41513837
Alignment:
| Q |
383 |
aaattgattgatagtttgcaattcaagggactgaattgctattttgcaaattt |
435 |
Q |
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||||||||||||| ||| ||||| |||||||| | |||||||||||||||||| |
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| T |
41513889 |
aaattgattgatatttttcaatttaagggactaacttgctattttgcaaattt |
41513837 |
T |
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