View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2076_low_8 (Length: 413)
Name: NF2076_low_8
Description: NF2076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2076_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Original strand, 39280706 - 39281094
Alignment:
| Q |
9 |
agcatagggtttgtatcgtgacatgctcttggagggtgttatcgctaacactgtaacatacaatacgctgattcatgcatttcttaggctagagttaatt |
108 |
Q |
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| T |
39280706 |
agcattgggtttgtatcgtgacatgctcttggagggtgttatcgctaacactgtaacatacaatacgctgattcatgcatttctaaggctagagttgatt |
39280805 |
T |
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| Q |
109 |
caacaagtagataagcttgttggtgaaatgcgatttagagggtgtccccttgataatattacttataatggccttattaaggctctctgtaaaactgggg |
208 |
Q |
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| T |
39280806 |
caacaagcagataagcttgttggtgaaatgcgatttagagggtgtccccttgataatattacttataatggccttattaaggctctctgtaaaactgggg |
39280905 |
T |
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| Q |
209 |
caacagagaaatgtttgggattgattgaacaaatgtttggtgaagaaatttttcctagtatcaactcttgtaatattctgatcaattccttctgtaggac |
308 |
Q |
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| T |
39280906 |
caacagagaaatgtttgggattgattgaacaaatgtttggtgaagaaatttttcctagtattaactcttgtaatattctgatcaattccttctgtaggac |
39281005 |
T |
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| Q |
309 |
tggaaaagtaaatgacgctcttcaatttcttcgggatatgattcagcgtggtctgacaccagatatagtcacttataacagcttgatca |
397 |
Q |
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| T |
39281006 |
tggaaaagtaaatgacgctcttcagtttcttcgggatatgattcagcgtggtctgacaccagatatagtcacttataacagcctgatca |
39281094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 17349492 - 17349112
Alignment:
| Q |
15 |
gggtttgtatcgtgacatgctcttggagggtgttatcgctaacactgtaacatacaatacgctgattcatgcatttcttaggctagagttaattcaacaa |
114 |
Q |
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| T |
17349492 |
gggtttgtatcatgacatgttcttggagggtgttattgctaacactataacatacaatacgttaattcacgcatttcttaggggagattcgattcaacaa |
17349393 |
T |
|
| Q |
115 |
gtagataagcttgttggtgaaatgcgatttagagggtgtccccttgataatattacttataatggccttattaaggctctctgtaaaactggggcaacag |
214 |
Q |
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| T |
17349392 |
gcgtataagcttgttaatgaaatgctatttcgagggtttccccttgataatattacttataatggccttattaaagctctctgtaaaactggggcaatag |
17349293 |
T |
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| Q |
215 |
agaaatgtttgggattgattgaacaaatgtttggtgaagaaatttttcctagtatcaactcttgtaatattctgatcaattccttctgtaggactggaaa |
314 |
Q |
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| T |
17349292 |
agaaaggtttgggattgattgaggaaatgtttgggaaagggatttttcctagtattaactcttgtaacattctgagcaattccttctgtagtattggaaa |
17349193 |
T |
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| Q |
315 |
agtaaatgacgctcttcaatttcttcgggatatgattcagcgtggtctgacaccagatatagtcacttataacagcttgat |
395 |
Q |
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| T |
17349192 |
agtaaatgacgctcttcggtttcttcgagatatgatccatcgtggtttgacaccagatatagtcacttataacagcttgat |
17349112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 17349717 - 17349526
Alignment:
| Q |
15 |
gggtttgtatcgtgacatgctcttggagggtgttatcgctaacactgtaacatacaatacgctgattcatgcatttcttaggctagagttaattcaacaa |
114 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||| | ||||| |||||||||||| ||| | ||||||||| |
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| T |
17349717 |
gggtttgtatcatgacatgttcttggagggtgttattgctaacactataacatacaatacgttaattcacgcatttcttaggggagattcgattcaacaa |
17349618 |
T |
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| Q |
115 |
gtagataagcttgttggtgaaatgcgatttagagggtgtccccttgataatattacttataatggccttattaaggctctctgtaaaactgg |
206 |
Q |
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| T |
17349617 |
gcgtataagcttgttaatgaaatgctatttcgagggtttccccttgataatattacttataatggccttattaaagctctctgtaaaactgg |
17349526 |
T |
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