View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_high_15 (Length: 245)
Name: NF20770_high_15
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_high_15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 46629584 - 46629332
Alignment:
| Q |
1 |
aagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatgat |
100 |
Q |
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| T |
46629584 |
aagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatgat |
46629485 |
T |
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| Q |
101 |
atatataaagaaaaaaggcactgatacgggcataaatgttcaaata--------atgttacaatcaaatgataattcaatcagctactccattgtaatta |
192 |
Q |
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| T |
46629484 |
atatataaagaaaaaaggcactgatacgggcataaatgttcaaataaatgttgtatgttacaatcaaatgataattcaatcagctactccattataatta |
46629385 |
T |
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| Q |
193 |
ccattggaatatacatatgaagttcattaacaacagagaggatgggatggcac |
245 |
Q |
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| T |
46629384 |
ccattggaatatacatatgaagttcattaacaacagagaggatgggatggcac |
46629332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 46637403 - 46637303
Alignment:
| Q |
4 |
aagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatgatata |
103 |
Q |
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|||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||| |
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| T |
46637403 |
aagatatgtaatcttctagagaagttccgccctccataaacgactttgaaatctgtgtat---aaatataagcaaagtgaggactgaaacaaattatata |
46637307 |
T |
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| Q |
104 |
tata |
107 |
Q |
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|||| |
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| T |
46637306 |
tata |
46637303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 46618700 - 46618596
Alignment:
| Q |
1 |
aagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatgat |
100 |
Q |
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|||||||| |||| | |||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||| ||||| |
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| T |
46618700 |
aagaagatgtgtaatcttctagagaagttcttccctccataaacgactttgaaatctgtgtat---aaatataagtaaagtgaggactgaaacatatgat |
46618604 |
T |
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| Q |
101 |
atatataa |
108 |
Q |
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|||||||| |
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| T |
46618603 |
atatataa |
46618596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15769818 - 15769882
Alignment:
| Q |
1 |
aagaagatatgtatttttctagagaaattctgccctccataaacgactttgaaatctgtgtataa |
65 |
Q |
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||||||||||||||| |||||||||| |||| ||||||| | | ||||| |||| ||| |||||| |
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| T |
15769818 |
aagaagatatgtattcttctagagaagttcttccctccacatatgacttagaaacctgagtataa |
15769882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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