View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20770_high_2 (Length: 785)

Name: NF20770_high_2
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20770_high_2
NF20770_high_2
[»] chr8 (8 HSPs)
chr8 (11-211)||(18106723-18106922)
chr8 (355-484)||(18106379-18106508)
chr8 (355-478)||(18097267-18097390)
chr8 (355-478)||(18138863-18138986)
chr8 (208-359)||(18106531-18106703)
chr8 (579-709)||(18300470-18300600)
chr8 (568-709)||(18302018-18302159)
chr8 (6-59)||(13025852-13025905)
[»] chr4 (3 HSPs)
chr4 (266-306)||(37876140-37876180)
chr4 (305-354)||(37876069-37876119)
chr4 (433-475)||(37875943-37875985)
[»] chr2 (3 HSPs)
chr2 (266-306)||(23895501-23895541)
chr2 (305-354)||(23895562-23895612)
chr2 (433-475)||(23895696-23895738)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 4e-77; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 18106922 - 18106723
Alignment:
Q  11 cacagaccggaatgaaacctataattgagttcatctaacattaaatctctggcatttactccaatttattcttgcaaatgacttacacaaggtatactat 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18106922 cacagaccgaaatgaaacctataattgagttcatctaacattaaatctctggtatttactccaatttattcttgcaaatgacttacacaaggtatactat 18106823  T
Q  111 gatcaggctagaagtaataagtnnnnnnncaagtctattgtgcataagcaaacaataatccaattctgctacccacacctaatacaccaaaccagtctat 210  Q
    ||| ||||||||| ||||||||       |||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||    
T  18106822 gattaggctagaaataataagt-aaaaaacaagtctattgtgcataagcaagcaataatccaattcagttacccacacctaatacaccaaaccagtctat 18106724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 355 - 484
Target Start/End: Complemental strand, 18106508 - 18106379
Alignment:
Q  355 aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18106508 aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg 18106409  T
Q  455 aatggcttaaaactaattattaatagggtt 484  Q
    ||||||||||||||||||||||||||||||    
T  18106408 aatggcttaaaactaattattaatagggtt 18106379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 355 - 478
Target Start/End: Complemental strand, 18097390 - 18097267
Alignment:
Q  355 aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg 454  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||| |||||||||||| |    
T  18097390 aatcgtcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcattgatcaagtggcacagtctaagcacaacatgcctg 18097291  T
Q  455 aatggcttaaaactaattattaat 478  Q
    ||||||||||||||||||||||||    
T  18097290 aatggcttaaaactaattattaat 18097267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 355 - 478
Target Start/End: Original strand, 18138863 - 18138986
Alignment:
Q  355 aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg 454  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||| |||||| |||||| |||||||||||| |    
T  18138863 aatcgtcattctgaagcaacaaaacaattttataactgacttctaacaaccaaactcacattcattgatcaagtggcacactctaagcacaacatgcctg 18138962  T
Q  455 aatggcttaaaactaattattaat 478  Q
    ||||||||||||||||||| ||||    
T  18138963 aatggcttaaaactaattactaat 18138986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 208 - 359
Target Start/End: Complemental strand, 18106703 - 18106531
Alignment:
Q  208 tatctttcttcattgatatattctaacaaagataaagcttcaattttgtagaaataatgcagtcaaatatgtgtatcaccaaaataataacactacta-- 305  Q
    ||||||| |||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||      
T  18106703 tatcttttttctgtgatatattctaactaagataaagcttcaattttgtagaaataatgcagtcaaatatgtgtatcgccaaaataataatactactaac 18106604  T
Q  306 -------------------acaaaagatagaactaactaagcatgaagcaacaaaacaataccataccaatca 359  Q
                       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18106603 aatatcaaggccgtctacgacaaaagatagaactaactaagcatgaagcaacaaaacaataccataccaatca 18106531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 579 - 709
Target Start/End: Original strand, 18300470 - 18300600
Alignment:
Q  579 aaaaccatgagcacctgctttattggtggtttagaacggagaaaggccgtaaaaaagatgaagtaatgacttgatgcgagtaattgttctctctttagca 678  Q
    ||||||||  |||| || |||||||||||||| ||| ||| |||||| ||||| || ||||| ||||||| ||||  ||||| |||||||||| ||| ||    
T  18300470 aaaaccatatgcacttgatttattggtggtttggaatggataaaggcagtaaagaatatgaaataatgacctgatttgagtagttgttctctcattatca 18300569  T
Q  679 caagaagtcaattaaactcttcaatttttaa 709  Q
    ||||||| || |||||||| | |||||||||    
T  18300570 caagaagccagttaaactcatgaatttttaa 18300600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 709
Target Start/End: Original strand, 18302018 - 18302159
Alignment:
Q  568 taagatcatcaaaaaccatgagcacctgctttattggtggtttagaacggagaaaggccgtaaaaaagatgaagtaatgacttgatgcgagtaattgttc 667  Q
    ||||||| || ||||||||  || | || |||||||||||||| ||| ||| |||||| ||||| || ||||| ||||||| ||||  |||||   |||     
T  18302018 taagatcttccaaaaccatatgctcttgatttattggtggtttggaatggacaaaggcagtaaagaatatgaaataatgacctgatttgagtagcagttt 18302117  T
Q  668 tctctttagcacaagaagtcaattaaactcttcaatttttaa 709  Q
    |||| ||| ||||||||| || |||||||| | |||||||||    
T  18302118 tctcattaccacaagaagccagttaaactcatgaatttttaa 18302159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 13025905 - 13025852
Alignment:
Q  6 aggagcacagaccggaatgaaacctataattgagttcatctaacattaaatctc 59  Q
    |||| ||||| || |||||||||||||||| |||||||||||| || |||||||    
T  13025905 aggaacacaggcccgaatgaaacctataatcgagttcatctaaaatcaaatctc 13025852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 37876180 - 37876140
Alignment:
Q  266 gcagtcaaatatgtgtatcaccaaaataataacactactaa 306  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  37876180 gcagtcaaatatgtgtataaccaaaataataacactactaa 37876140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 37876119 - 37876069
Alignment:
Q  305 aacaaaagatagaactaactaagcatgaagc-aacaaaacaataccatacc 354  Q
    ||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  37876119 aacaaaagatagaactaactaagcatgaagcaaataaaccaataccatacc 37876069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 475
Target Start/End: Complemental strand, 37875985 - 37875943
Alignment:
Q  433 tactctaggcacaacatgcccgaatggcttaaaactaattatt 475  Q
    ||||||| || ||||||||| ||||||||||||||||||||||    
T  37875985 tactctaagcgcaacatgcctgaatggcttaaaactaattatt 37875943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 23895501 - 23895541
Alignment:
Q  266 gcagtcaaatatgtgtatcaccaaaataataacactactaa 306  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  23895501 gcagtcaaatatgtgtataaccaaaataataacactactaa 23895541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 23895562 - 23895612
Alignment:
Q  305 aacaaaagatagaactaactaagcatgaagc-aacaaaacaataccatacc 354  Q
    ||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  23895562 aacaaaagatagaactaactaagcatgaagcaaataaaccaataccatacc 23895612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 475
Target Start/End: Original strand, 23895696 - 23895738
Alignment:
Q  433 tactctaggcacaacatgcccgaatggcttaaaactaattatt 475  Q
    ||||||| || ||||||||| ||||||||||||||||||||||    
T  23895696 tactctaagcgcaacatgcctgaatggcttaaaactaattatt 23895738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University