View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_high_3 (Length: 517)
Name: NF20770_high_3
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 3015357 - 3014852
Alignment:
| Q |
1 |
ccctaccttgttcttgaattgctctttgcataaaagtttcactttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015357 |
ccctaccttgttcttgaattgctctttgcataaaagtttcactttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttat |
3015258 |
T |
|
| Q |
101 |
tgtaaaataccttctttcaattgtttccttgtactcttgttgcattcttgctcttaacccttgaaaatcatccatcatatctttgagnnnnnnncccaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3015257 |
tgtaaaataccttctttcaattgtttccttgtactcttgttgcattcttgctcttaacccttgaaaatcatccatcatatctttgagtttttttcccaat |
3015158 |
T |
|
| Q |
201 |
ccactaaccactgaagttcttgttctatctgctgatgaacctggaccacaccctggaatgtttctattcgcggcattcgaacgttctaatgcttcaagct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015157 |
ccactaaccactgaagttcttgttctatctgctgatgaacctggaccacaccctggaatgtttctattcgcggcattcgaacgttctaatgcttcaagct |
3015058 |
T |
|
| Q |
301 |
tacccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatctttcattgttttagcattgtggacaattttgct |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015057 |
tacccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatctttcattgttttagcattgtggacaattttgct |
3014958 |
T |
|
| Q |
401 |
ttcttcatttgcctcttgtaattttctataaagcttttcgacaagcctcatgtcttctttcacattctcaacatcctcaaagaatttatcaaggttgata |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3014957 |
ttcttcatttgcctcttgtaattttctataaagcttttcgacaagcctcatgtcttctttcacattctcaacatcctcaaagaatttatcaaggttgata |
3014858 |
T |
|
| Q |
501 |
ctctct |
506 |
Q |
| |
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|||||| |
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| T |
3014857 |
ctctct |
3014852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 35955780 - 35956209
Alignment:
| Q |
1 |
ccctaccttgttcttgaattgctctttgcataaaagtttcactttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| || ||||| |||||||| |||||||| || ||||| |
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| T |
35955780 |
ccctaccttgttcttgaattgccctttgcatgaaattttcactttctccacttgatatcaaattttctatagtttcttcatccgctttctctcccgttat |
35955879 |
T |
|
| Q |
101 |
tgtaaaataccttctttcaattgtttccttgtactcttgttgcattcttgctcttaacccttgaaaatcatccatcatatctttgagnnnnnnncccaat |
200 |
Q |
| |
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|||||||||||| | ||| | |||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||| || || || |
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| T |
35955880 |
tgtaaaatacctccgttccaccgtttccttatactcaagttgcattcttgctctcaaaccttgaaaatcatccatcatatctttaagtttcttccctaaa |
35955979 |
T |
|
| Q |
201 |
ccactaaccactgaagttcttgttctatctgctgatgaacctggaccacaccctggaatgtttctattcgcggcattcgaacgttctaatgcttcaagct |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| || |||||||| || | |
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| T |
35955980 |
ccactaaccactgaagttctagttctatctgctgatgaacctggaccacaccctggaatgtttctattagctgcatttgaacgatccaatgcttcgagtt |
35956079 |
T |
|
| Q |
301 |
tacccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatctttcattgttttagcattgtggacaattttgct |
400 |
Q |
| |
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| || ||||| |||||||| | ||| || || |||||||||||||| ||||| | ||||| ||| |||||||| |||||||||||||| || |||| || |
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| T |
35956080 |
ttcctttaataattttgacacgtttaaggacttgttcaacatctttgtccattcgtgctcgaagttctttcatggttttagcattgtgcacggttttact |
35956179 |
T |
|
| Q |
401 |
ttcttcatttgcctcttgtaattttctata |
430 |
Q |
| |
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||||||||| ||||||| ||||| ||||| |
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|
| T |
35956180 |
ttcttcattagcctctttcaatttcctata |
35956209 |
T |
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