View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20770_high_4 (Length: 462)
Name: NF20770_high_4
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 26832582 - 26832206
Alignment:
| Q |
1 |
gctggaagtttggtaatttccttttcttctccttcttataatcacattaacttcttttgtttatcttttaggggtcatgctaacttgtgccataaagagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
26832582 |
gctggaagtttggtaatttccttttcttctccttcttataatcacattaacttcttttatttatcttttaggg-tcatgctaacttgtgccctaaagagc |
26832484 |
T |
|
| Q |
101 |
tacaaaacaataaaatcaatctgtcggtagattttgtttattttgagaatgttagattttggccgtggctgaagtaagtcccacttagtacttgaatggc |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832483 |
cgcaaaacaataaaatcaaactgtcggtagattttgtttattttgagaatgttagattttggccgtggctgaagtaagtcccacttagtacttgaatggc |
26832384 |
T |
|
| Q |
201 |
tttcttatttagccacgtatgcttctttttatgatctccaaagaagtctagtgttattttcttcctttggttggtttcttttgtgtgcataaaaagtaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832383 |
tttcttatttagccacgtatgcttctttt-atgatcttcaaagaagtctagtgttattttcttcctttggttggtttcttttgtgtgcataaaaagtaac |
26832285 |
T |
|
| Q |
301 |
atggaaaaggtggaaaatgctacttaaaagagtgcatatttgatttggatacagtctgtcatgagaagtcatcgtcatg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832284 |
atggaaaaggtggaaaatgctacttaaaagagtgcatatttgatttggatacagtctgtcatgagaagtcatcgtcatg |
26832206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University