View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_high_6 (Length: 432)
Name: NF20770_high_6
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 13771943 - 13771537
Alignment:
| Q |
18 |
accacaccacagtggttctactcttcaaaaccttgttagaacaaaaatcacccacttacaactccattagtagcttttcttttttgtatacccttaaagc |
117 |
Q |
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| T |
13771943 |
accacaccacagtggttctactcttcaaaaccttgttagaacaaaaatcacccactttcaactccattgatagcttttcttttttgtatacccttaaagc |
13771844 |
T |
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| Q |
118 |
ctgcattaacaaaaaccattcctatattctaggaaaacaattgcatgccctcatcataaaatttggatatgaatccataattcaactccaaacatccctt |
217 |
Q |
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| T |
13771843 |
ctgcattaacaaaaaccattcctatgttctaggaaaacaattgcattccctgatcataaaatttggatatgaatccataattcaactccaaacatccctt |
13771744 |
T |
|
| Q |
218 |
ttgaaagtgtatgctggaggtggtaatttatttgatgcacatcaagtgtttgatgaaatacccgaaaagaatattatttgttggacgtctttgatttcgg |
317 |
Q |
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| T |
13771743 |
ttgaaagtgtatgctggaggtggtaacttatttgatgcacaccaagtgtttgatgaaatacccgaaaagaatattatttgttggacgtctttgatttcgg |
13771644 |
T |
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| Q |
318 |
cttatgttgaaaatcgtaaatctaacaaaggtttagagttgtttaggctgatgttgatgaacaatgtggagcctgatcaaattgttttgacgactgctct |
417 |
Q |
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| T |
13771643 |
cttatgttgaaaatcataaatccaataaaggtttggagttgtttaggctgatgttaatgaacaatgtggagcctgatcaaattgttttgacgactgctct |
13771544 |
T |
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| Q |
418 |
ctctgct |
424 |
Q |
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| T |
13771543 |
ctctgct |
13771537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 244 - 424
Target Start/End: Complemental strand, 13764502 - 13764322
Alignment:
| Q |
244 |
tttatttgatgcacatcaagtgtttgatgaaatacccgaaaagaatattatttgttggacgtctttgatttcggcttatgttgaaaatcgtaaatctaac |
343 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
13764502 |
tttatttgatgcacaccaagtgtttgatgaaatacccgaaaagaatattatttgttggacgtctttgatttcggcttatgttgaaaatcataaatccaat |
13764403 |
T |
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| Q |
344 |
aaaggtttagagttgtttaggctgatgttgatgaacaatgtggagcctgatcaaattgttttgacgactgctctctctgct |
424 |
Q |
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| T |
13764402 |
aaaggtttggagttgtttaggctgatgttgatgaacaatgtggagcctgatcaaattgttttgacgaccgctctctctgct |
13764322 |
T |
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