View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_high_8 (Length: 378)
Name: NF20770_high_8
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 216 - 360
Target Start/End: Complemental strand, 24040828 - 24040684
Alignment:
| Q |
216 |
tttcaaacctttgcaagcaaatggaacaaccatgtcaccctacctacaacccttaaatcctcctccgagagagaatcatacgtaaaccaggtcgagtaga |
315 |
Q |
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| T |
24040828 |
tttcaaacctttgcaagcaaatggaacaaccatgccaccctacctacaacccttaaatcctcctccgagagagaatcatacgtaaaccaggtcgagtaga |
24040729 |
T |
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| Q |
316 |
ctacatctgaagcaaacttccaagaccaataatcaacccccaatt |
360 |
Q |
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| T |
24040728 |
ctgcatctgaagcaaacttccaagaccaataatcaacccccaatt |
24040684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 24040986 - 24040899
Alignment:
| Q |
124 |
tgcctccatccttgtgcccaaactaaggaaataattaaccaagtcaacgccaccaaagagattaagacacaagaaattagcagaaaaa |
211 |
Q |
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| T |
24040986 |
tgcctccatccttgtgcccaaactaaggaaataattaaccaagtcaacgccaccaaagagattaagacacaagaaattagcagaaaaa |
24040899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 24041099 - 24041061
Alignment:
| Q |
11 |
cacagatagatggaacaccaatggtgaccaaaagatccc |
49 |
Q |
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| T |
24041099 |
cacagatagatggaacaccaatggtgaccaaaagatccc |
24041061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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