View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_high_9 (Length: 346)
Name: NF20770_high_9
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 36160535 - 36160861
Alignment:
| Q |
8 |
agattattcttcacaaggagtgttacttaggttttaaataaaagggtttagagacaa-gcaaaagctgtcagccagctgaactgaatgagtatgtagaga |
106 |
Q |
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| T |
36160535 |
agattattcttcacaaggagtgttacttaggttttaaataaaaaggtttagagacaaagcaaaagctgtcagccagctgaactgaatgagta----gaga |
36160630 |
T |
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| Q |
107 |
tggaaaaaatctgtcagttactttggattcagcacaaaagattatgaaatttagcatcgaaatgtgcaaattaacattcacgacatagcaaaagacaaat |
206 |
Q |
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| T |
36160631 |
tggaaaaaatctgtcagttactttggattcagcacaaaagcttatgaaatttagcattgaaatgcgcaaattaacattcacgccatagcaaaagacaaat |
36160730 |
T |
|
| Q |
207 |
ttcaaggggcagtttccttttcttagtctttaggatacgtttgtttcatttatcaagatattc---------tatctatgcatggtagttacttttcaat |
297 |
Q |
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| T |
36160731 |
ttcaagaggcagtttccttttcttagtctttaggatacgtttgtttcatttatcaagatattcttgggaaagtacatttctatggtagttacttttcaat |
36160830 |
T |
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| Q |
298 |
gatatatatgtgaatagaaattatccagtaa |
328 |
Q |
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| T |
36160831 |
gatatatatgtgaatagaaattatctagtaa |
36160861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 36154808 - 36155068
Alignment:
| Q |
8 |
agattattcttcacaaggagtgttacttaggttttaaataaaagggtttagagacaagcaaaagctgtcagccagctgaactgaatgagtatgtagagat |
107 |
Q |
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| T |
36154808 |
agattatttttcacaaggagtgttacttaggttttaaataaaaaggtttagagacaagcaaaagctatcagccaactgaactgaatgagtaa----agat |
36154903 |
T |
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| Q |
108 |
ggaaaaaatctgtcagttactttggattcagcacaaaagattatgaaatttagcatcgaaatgtgcaaattaacattcacgacatagcaaaagacaaatt |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||| |
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| T |
36154904 |
ggaaaaaatctgtcagttatcttggattcagcacaaaagcttatgaaatttagcattgaaatgtgcaaattaacattcacgccattgtaaaagacaaatt |
36155003 |
T |
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| Q |
208 |
tcaaggggcagtttccttttcttagtctttaggatacgtttgtttcat--ttatcaagatattct |
270 |
Q |
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| T |
36155004 |
tcaaggggcagtttccttttcttagtctttaggatacgtttgtttcatgattatcaagatattct |
36155068 |
T |
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