View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_low_1 (Length: 836)
Name: NF20770_low_1
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 15 - 606
Target Start/End: Original strand, 37027450 - 37028026
Alignment:
| Q |
15 |
agcataggtacaaactacaagattacaagaacaaaacaagaaaatgtagcattttaattagaaacatgactacaattgttctactctataattatgctca |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027450 |
agcataggtacaaactacaagattacaagatcaaaacaagaaaatgtagcattttaattagaaacatgactacaattgttctactctataattatgctca |
37027549 |
T |
|
| Q |
115 |
ttgtttgatgtgttatgacaatatgacattgtcgttccacaacgcttcttgtgcttgttgaagttgttgtagtatctgctccagaattggttctgtttca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
37027550 |
ttgtttgatgtgttatgacaatatgacattgtcgttccacaatgcttcttgtgcttgttgaagttgttgtagtatctgctccacaattgattctgtttca |
37027649 |
T |
|
| Q |
215 |
acatttggaggtggagaaggaggagatggaatgttgtccctatagagaagagggtgaaaatttccatcccatgagttatnnnnnnnnnnnnnnnnnnnnn |
314 |
Q |
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| T |
37027650 |
atatttggaggtggagaaggaggagatggaatgttgtccctatagagaagagggtgaaaatttccatcccatgagttat------tagtagtagtagtag |
37027743 |
T |
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| Q |
315 |
ngtaaaagatgcttcttcttttccttatttttgataaattagcactttctttaattcgaatgaaatgcttttgagcatggctagcaacttgagttgcagt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37027744 |
tgtaaaagatgcttcttcttttccttatttttgataacttagcactttctttaattcgaatgaaatgcttttgagcatggctagcaacttgagttgtagt |
37027843 |
T |
|
| Q |
415 |
ttttgtaccaacatgttgtgcaatctttatccattttcccttgccactgttgccatacttctcaaacccctccagaaataacctataaataacaagttac |
514 |
Q |
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| T |
37027844 |
ttttgtaccaacatgttgtgcaatctttatccattttccc---------ttgccatacttctcaaacccctccagaaataacctataaataacaagttac |
37027934 |
T |
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| Q |
515 |
aatttagtcattaaaacaaatataaaaagtaatgttctccaaatctttttatggatttctcatcatgcatagactcattcacgtacatgaac |
606 |
Q |
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| T |
37027935 |
aatttagtcattaaaacaaatataaaaagtaatgttctccaaatctttttatggatttcttatcatgcatagactcattcacgtacatgaac |
37028026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 640 - 818
Target Start/End: Original strand, 37028060 - 37028235
Alignment:
| Q |
640 |
cacgtgtaaagttaattactttctgaaataattataataagtatatacctgtgttgttcttcatcccaatgataatgccctttcttgatcttattcacaa |
739 |
Q |
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| T |
37028060 |
cacgtgtaaagttaattactttctgaaataattataa---gtatatacctgtgttgttcttcatcccaatgatactgccctttattgatcttattcacaa |
37028156 |
T |
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| Q |
740 |
gtggaggaactttgttttcatcagttgacgcattctcttttgaaataaaaccatctgagtgtgttggaaacttgacatg |
818 |
Q |
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| T |
37028157 |
gtggaggaactttgttttcatcagctgacacattctcttttgaaataaaaccatctgagtgtgttggaaacttgacatg |
37028235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 23193908 - 23193871
Alignment:
| Q |
232 |
aggaggagatggaatgttgtccctatagagaagagggt |
269 |
Q |
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| T |
23193908 |
aggaggagatggaatgatgtccctataaagaagagggt |
23193871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 32248373 - 32248293
Alignment:
| Q |
376 |
gaaatgcttttgagcatggctagcaacttgagttgcagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
456 |
Q |
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| T |
32248373 |
gaaatgcttttgagcatggctagcaacttgacttgcagttcttgtacgaacatgttgtgaaatcattttccaatttccctt |
32248293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 32236179 - 32236099
Alignment:
| Q |
376 |
gaaatgcttttgagcatggctagcaacttgagttgcagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
456 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||| | |||| |||||||| |
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| T |
32236179 |
gaaatgcttttgagcatggctagcaacttgacttgcagttcttgtacgaacatgttgtgaaatcagtttccactttccctt |
32236099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 32254748 - 32254693
Alignment:
| Q |
232 |
aggaggagatggaatgttgtccctatagagaagagggtgaaaatttccatcccatg |
287 |
Q |
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| T |
32254748 |
aggaggaaatggaatgttgtccttatagagaagagggtggaaatttccatcccatg |
32254693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 32236344 - 32236302
Alignment:
| Q |
247 |
gttgtccctatagagaagagggtgaaaatttccatcccatgag |
289 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
32236344 |
gttgtccttatagagaagagggtggaaatttccatcccatgag |
32236302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 32248538 - 32248496
Alignment:
| Q |
247 |
gttgtccctatagagaagagggtgaaaatttccatcccatgag |
289 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
32248538 |
gttgtccttatagagaagagggtggaaatttccatcccatgag |
32248496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 32254571 - 32254516
Alignment:
| Q |
376 |
gaaatgcttttgagcatggctagcaacttgagttgcagtttttgtaccaacatgtt |
431 |
Q |
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||||||||||||| |||||||| |||||||| ||| ||||||||||| || ||||| |
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| T |
32254571 |
gaaatgcttttgatcatggctaccaacttgacttggagtttttgtactaagatgtt |
32254516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 32254690 - 32254648
Alignment:
| Q |
227 |
ggagaaggaggagatggaatgttgtccctatagagaagagggt |
269 |
Q |
| |
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|||| |||||| ||||||||||||||| ||||||||||||||| |
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| T |
32254690 |
ggaggaggaggggatggaatgttgtccttatagagaagagggt |
32254648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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