View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_low_12 (Length: 287)
Name: NF20770_low_12
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_low_12 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 4137 - 3939
Alignment:
| Q |
20 |
catttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttg |
119 |
Q |
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| T |
4137 |
catttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttg |
4038 |
T |
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| Q |
120 |
ctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
218 |
Q |
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| T |
4037 |
ctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
3939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 11793 - 11595
Alignment:
| Q |
20 |
catttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttg |
119 |
Q |
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| T |
11793 |
catttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttg |
11694 |
T |
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| Q |
120 |
ctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
218 |
Q |
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| T |
11693 |
ctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
11595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 6510113 - 6509915
Alignment:
| Q |
20 |
catttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
6510113 |
catttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttg |
6510014 |
T |
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| Q |
120 |
ctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
218 |
Q |
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| T |
6510013 |
ctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
6509915 |
T |
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