View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_low_13 (Length: 265)
Name: NF20770_low_13
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_low_13 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 1133995 - 1134093
Alignment:
| Q |
41 |
aatatatttttagcttaaaccgatattctatatttttagcttagacagaaattctaatagtatttatcaatttataagaccaaattactccattctttc |
139 |
Q |
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| T |
1133995 |
aatatatttttagcttaaaccgatattctatatttttagcttagacagaaattctaatagtatctatcaatttataagaccaaattactccattctttc |
1134093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 1134150 - 1134221
Alignment:
| Q |
194 |
ggcttaaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaaccc |
265 |
Q |
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| T |
1134150 |
ggcttaaaggttcatgtaagttaacacgttttttattttagtcttcgtatcttttatgttgcgaaacaaccc |
1134221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 13222928 - 13222994
Alignment:
| Q |
199 |
aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaaccc |
265 |
Q |
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| T |
13222928 |
aaaggtccctgtaagttagcacgtttttggttttagtccgtgtatcttttttgttgcgaaacaaccc |
13222994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 43882092 - 43882135
Alignment:
| Q |
222 |
tttttgattttagtctttgtatcttttttgttgcgaaacaaccc |
265 |
Q |
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| T |
43882092 |
tttttggttttagtccctgtatcttttttgttgcgaaacaaccc |
43882135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 34538150 - 34538207
Alignment:
| Q |
209 |
gtaagttaacacgtttttgattttagtctttgtatc-ttttttgttgcgaaacaaccc |
265 |
Q |
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| T |
34538150 |
gtaagttagcacgtttttggttttagtccttgtatctttttttgttgcgaaacaaccc |
34538207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 34539844 - 34539776
Alignment:
| Q |
198 |
taaaggttcatgtaagttaacacgtttttgattttagtctttgtatctt-ttttgttgcgaaacaaccc |
265 |
Q |
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| T |
34539844 |
taaaggtccatgtaagttagcgcgtttttggttttaatctctgtatctttttttgttgcgaaacaaccc |
34539776 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 28167375 - 28167308
Alignment:
| Q |
199 |
aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctt-ttttgttgcgaaacaaccc |
265 |
Q |
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| T |
28167375 |
aaaggtccctgtaagttagcgcgtttttggttttagtccttgtatctttttttgttgcgaaacaaccc |
28167308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 30545678 - 30545720
Alignment:
| Q |
221 |
gtttttgattttagtctttgtatcttttttgttgcgaaacaac |
263 |
Q |
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| T |
30545678 |
gtttttggttttagtctctgtatcttttttgttgcaaaacaac |
30545720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 28165672 - 28165733
Alignment:
| Q |
199 |
aaaggttcatgtaagttaacacgtttttgattttagtctttgtatc-ttttttgttgcgaaa |
259 |
Q |
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| T |
28165672 |
aaaggtccatgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaa |
28165733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 38756669 - 38756735
Alignment:
| Q |
199 |
aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaaccc |
265 |
Q |
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| T |
38756669 |
aaaggtccctgtaagttagcgcgtttttggttttagtccctgtatcttttttgttgcgaaataaccc |
38756735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 38758362 - 38758295
Alignment:
| Q |
199 |
aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctt-ttttgttgcgaaacaaccc |
265 |
Q |
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| T |
38758362 |
aaaggtccctgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaacaaccc |
38758295 |
T |
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