View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_low_17 (Length: 239)
Name: NF20770_low_17
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38213862 - 38213635
Alignment:
| Q |
1 |
ttcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatctta-----atttgttatgattcttttatttta |
95 |
Q |
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| T |
38213862 |
ttcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatcttattttaatttgttatgattctttgatttta |
38213763 |
T |
|
| Q |
96 |
tatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgtagtttgtatcacttccttatcagttttcggta |
194 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38213762 |
tatattcctctatatttttttggtgtctatcttagataacatgtgatcaaataaatcacattctttgtagtttgtaccacttccttatcagttttcggta |
38213663 |
T |
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| Q |
195 |
tattgagaacactatatataccctgttc |
222 |
Q |
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| T |
38213662 |
tattgagaacactatatataccctgttc |
38213635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 38218081 - 38217913
Alignment:
| Q |
1 |
ttcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatc-----ttaatttgttatgattcttttatttta |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
38218081 |
ttcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatcttattttaatttgttatgattctttgatttta |
38217982 |
T |
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| Q |
96 |
tatattcctctata-tattttggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
163 |
Q |
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| T |
38217981 |
tatattcctctatatttttttggtgtctattttagatagcacatgatcaaataaatcaaattctttgta |
38217913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 42993602 - 42993697
Alignment:
| Q |
69 |
ttaatttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
163 |
Q |
| |
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||||||| |||||||||||| |||| ||| ||||||| ||| |||| ||||||| | ||| |||||| |||| ||||||||||||||||||||| |
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| T |
42993602 |
ttaatttattatgattctttgatttactatcttcctctgtatttttttggtgtctgttttatataacagatgatgaaataaatcaaattctttgta |
42993697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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