View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_low_18 (Length: 236)
Name: NF20770_low_18
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 30393767 - 30393970
Alignment:
| Q |
20 |
cacatgcagcatatggtggagtgtgcgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttcattcagcgcctgtttgccctt |
119 |
Q |
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| T |
30393767 |
cacatgcagcatatggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttcattcagcgcctgtttgccctt |
30393866 |
T |
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| Q |
120 |
taagaatcttgtatccatatccctcaactgctgccctgaaaggtaagactggatagaatttataggtttttcatagttaaaattaattccagctagagaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393867 |
taagaatcttgtatccatatccctcaactgctgccctgaaaggtaagactggatagaatttataggtttttcatagttaaaattaattccagctagagaa |
30393966 |
T |
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| Q |
220 |
taat |
223 |
Q |
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|||| |
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| T |
30393967 |
taat |
30393970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 30407361 - 30407564
Alignment:
| Q |
20 |
cacatgcagcatatggtggagtgtgcgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttcattcagcgcctgtttgccctt |
119 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||| | | |
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| T |
30407361 |
cacatgcagcatatggtggagtgtgtgaggtacttgcatgatcaagagaaggtgcacatgcagcatatgaagattcttccttcacctcctgtttaggcct |
30407460 |
T |
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| Q |
120 |
taagaatcttgtatccatatccctcaactgctgccctgaaaggtaagactggatagaatttataggtttttcatagttaaaattaattccagctagagaa |
219 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||| | |||||| || ||||||||||||||||||||||||||| | |
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| T |
30407461 |
taagaatcctgtatccatatccctcaactgctgtcctgaaagataagactgaatagaactcataggtcttgcatagttaaaattaattccagctagagca |
30407560 |
T |
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| Q |
220 |
taat |
223 |
Q |
| |
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|||| |
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| T |
30407561 |
taat |
30407564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 30393725 - 30393781
Alignment:
| Q |
32 |
atggtggagtgtgcgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
88 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393725 |
atggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
30393781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 30407319 - 30407375
Alignment:
| Q |
32 |
atggtggagtgtgcgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
88 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407319 |
atggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
30407375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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