View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_low_19 (Length: 211)
Name: NF20770_low_19
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 26831743 - 26831550
Alignment:
| Q |
1 |
gcggatgaatgtttaatgacaagggtgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggct |
100 |
Q |
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| T |
26831743 |
gcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggct |
26831644 |
T |
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| Q |
101 |
tcaacggtaaaatccctaatctaatctcatcacatggctaagacagtttcatccattttccttctaaattgtgattatagtcatagttatggtt |
194 |
Q |
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| T |
26831643 |
tcaacggtaaaacccctaatctaatctcatcgcatggctaaaacagtttcatccattttccttctgaattgtgattatagtcatagttatggtt |
26831550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 26817987 - 26817885
Alignment:
| Q |
7 |
gaatgtttaatgacaagggtgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacg |
106 |
Q |
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|||||||| ||||| ||| ||||| | ||||||||| |||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| | |
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| T |
26817987 |
gaatgtttgatgacgaggatgcaacaaatgtcactcgattatcattttaaggtagaacaagaagtgggatcttccgcttacgccttctttggcttcaatg |
26817888 |
T |
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| Q |
107 |
gta |
109 |
Q |
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||| |
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| T |
26817887 |
gta |
26817885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 26785099 - 26784994
Alignment:
| Q |
5 |
atgaatgtttaatgacaagggtgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaa |
104 |
Q |
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| T |
26785099 |
atgaatgtttgatgacgaggatgcaaaagatgtcacttgattatcattttacggttgaacaagaagtggggtcttctacttatgccttctttggcttcaa |
26785000 |
T |
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| Q |
105 |
cggtaa |
110 |
Q |
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||||| |
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| T |
26784999 |
tggtaa |
26784994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 26791302 - 26791197
Alignment:
| Q |
5 |
atgaatgtttaatgacaagggtgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaa |
104 |
Q |
| |
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|||||||||||||||| ||| ||||| | |||||||| |||| ||||||| || ||||||||||| || |||||| |||| ||||||||||||||||| |
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| T |
26791302 |
atgaatgtttaatgacgaggatgcaacaaatgtcacttgattaccattttaaggtggaacaagaagtagggtcttccacttatgccttctttggcttcaa |
26791203 |
T |
|
| Q |
105 |
cggtaa |
110 |
Q |
| |
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||||| |
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| T |
26791202 |
tggtaa |
26791197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 41919480 - 41919589
Alignment:
| Q |
2 |
cggatgaatgtttaatgacaagggtgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggctt |
101 |
Q |
| |
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||||||||||| | ||||| || |||||||||||||||| |||| |||||||| || ||||||||||| || |||||| |||| |||||||||||||| |
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| T |
41919480 |
cggatgaatgtatgatgactagaatgcaagagatgtcactagattaccattttactgtggaacaagaagtggggtcttccacttatgccttctttggctt |
41919579 |
T |
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| Q |
102 |
caacggtaaa |
111 |
Q |
| |
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|||||||||| |
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| T |
41919580 |
caacggtaaa |
41919589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 20237397 - 20237292
Alignment:
| Q |
5 |
atgaatgtttaatgacaagggtgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaa |
104 |
Q |
| |
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|||||||||| ||||||| ||||||||||||| | |||| ||||| |||||||| |||||||||||||| | || | || |||||||||||||| |
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| T |
20237397 |
atgaatgtttgttgacaagaatgcaagagatgtctttggattaccatttcacagttgagcaagaagttggatcagctactcatgctttctttggcttcaa |
20237298 |
T |
|
| Q |
105 |
cggtaa |
110 |
Q |
| |
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||||| |
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|
| T |
20237297 |
tggtaa |
20237292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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