View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_low_5 (Length: 444)
Name: NF20770_low_5
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 34770863 - 34771271
Alignment:
| Q |
19 |
gaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34770863 |
gaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagt |
34770962 |
T |
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| Q |
119 |
atatgatggaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34770963 |
atatgatggaatgcattctactatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataac |
34771062 |
T |
|
| Q |
219 |
aataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771063 |
aataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcaga |
34771162 |
T |
|
| Q |
319 |
agtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771163 |
agtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattca |
34771262 |
T |
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| Q |
419 |
ttcattatt |
427 |
Q |
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| T |
34771263 |
ttcattatt |
34771271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 34781214 - 34781365
Alignment:
| Q |
21 |
acacactactttttcaaataaaa-gatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagta |
119 |
Q |
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||||||||||| ||||||||||| ||| || ||||||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||| ||| |
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| T |
34781214 |
acacactacttgttcaaataaaaagattagagataaaatagtaattttaaaattaagatgtttcat--ggaggaaagaaaaataataagagatgatggta |
34781311 |
T |
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| Q |
120 |
tatgatggaatgcattctactatataatccattttattccattcaatttttacaaa |
175 |
Q |
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|| |||| |||||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
34781312 |
tacgatgaaatgcattatattata--atccattttattccattcaatttttacaaa |
34781365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 11549498 - 11549556
Alignment:
| Q |
21 |
acacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatg |
79 |
Q |
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| T |
11549498 |
acacactactttttcaaataaaagatcagggatagaatagtaattacaaaattaagatg |
11549556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 34795285 - 34795353
Alignment:
| Q |
211 |
ataataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact |
279 |
Q |
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||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| |||| |
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| T |
34795285 |
ataataacaataataaatagagccaacgaagtttgactcaattgataaaaaataacaaaaaatttaact |
34795353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 34780505 - 34780570
Alignment:
| Q |
213 |
aataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact |
279 |
Q |
| |
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|||||||| |||||||||| || ||||||| || |||||||||||||||||||||||||||||||| |
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| T |
34780505 |
aataacaaaaataaaaagaatta-cgaagttcgactcaattgataaaaaataactaaaaattcaact |
34780570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 34795418 - 34795512
Alignment:
| Q |
295 |
aatacatctttagagagtctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattg |
389 |
Q |
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||||| ||||||||||| || | ||| |||||| || ||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||| |
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| T |
34795418 |
aatacctctttagagagactataaggtagctctaactcaattaagttgcgaaatccgactcatttaaacttttttgtgccaaataagtagcattg |
34795512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 34777675 - 34777720
Alignment:
| Q |
122 |
tgatggaatgcattctactatataatccattttattccattcaatttt |
169 |
Q |
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| T |
34777675 |
tgatggaatccattctactatc--atccattttattccattcaatttt |
34777720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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