View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20770_low_6 (Length: 438)

Name: NF20770_low_6
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20770_low_6
NF20770_low_6
[»] chr5 (16 HSPs)
chr5 (6-420)||(3299800-3300222)
chr5 (6-420)||(3392693-3393115)
chr5 (228-420)||(1163333-1163528)
chr5 (323-420)||(1850196-1850293)
chr5 (77-196)||(1163164-1163288)
chr5 (228-368)||(40418614-40418758)
chr5 (142-232)||(1850346-1850444)
chr5 (228-368)||(38988036-38988180)
chr5 (228-368)||(39880151-39880297)
chr5 (36-85)||(39880491-39880540)
chr5 (228-368)||(39726755-39726906)
chr5 (149-230)||(39880327-39880405)
chr5 (149-230)||(40418782-40418860)
chr5 (149-202)||(38988229-38988282)
chr5 (6-42)||(1162348-1162384)
chr5 (6-42)||(40419679-40419715)
[»] chr4 (4 HSPs)
chr4 (228-372)||(44444395-44444543)
chr4 (273-368)||(25911951-25912046)
chr4 (43-84)||(25911657-25911698)
chr4 (149-185)||(25911785-25911821)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Complemental strand, 3300222 - 3299800
Alignment:
Q  6 agtgagaagaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgc 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||    
T  3300222 agtgaaaagaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgc 3300123  T
Q  98 cgaatataattaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300122 cgaatataattaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtg 3300023  T
Q  198 aaaagaactagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300022 aaaagaactagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaat 3299923  T
Q  298 agaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299922 agaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaa 3299823  T
Q  398 atggatggcagttggttcgattt 420  Q
    |||||||||||||||||||||||    
T  3299822 atggatggcagttggttcgattt 3299800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Complemental strand, 3393115 - 3392693
Alignment:
Q  6 agtgagaagaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgc 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||    
T  3393115 agtgaaaagaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgc 3393016  T
Q  98 cgaatataattaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3393015 cgaatataattaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtg 3392916  T
Q  198 aaaagaactagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392915 aaaagaactagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaat 3392816  T
Q  298 agaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392815 agaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaa 3392716  T
Q  398 atggatggcagttggttcgattt 420  Q
    |||||||||||||||||||||||    
T  3392715 atggatggcagttggttcgattt 3392693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 228 - 420
Target Start/End: Original strand, 1163333 - 1163528
Alignment:
Q  228 aaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtg 327  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1163333 aaatataaaaaagctaataaatgaaaagcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagta 1163432  T
Q  328 g---atcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgattt 420  Q
    |   ||||||||||||||||||||||||||||| ||||||||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||    
T  1163433 gatcatcatccatcaagcaaatcctccaatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggattt 1163528  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 1850293 - 1850196
Alignment:
Q  323 aagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgattt 420  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || ||||||||||||||||| |||||    
T  1850293 aagtagatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggattt 1850196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 1163164 - 1163288
Alignment:
Q  77 ggtgaaatgtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatatcaaa 167  Q
    ||||||| | |||||||||||||||||||||    |||| ||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  1163164 ggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaa 1163259  T
Q  168 cagaaattgcaaattgcaacagagtaagt 196  Q
    ||||||||||||||||||||| |||||||    
T  1163260 cagaaattgcaaattgcaacaaagtaagt 1163288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 40418758 - 40418614
Alignment:
Q  228 aaatagaaaaaagctaataaatgaaaagcatcttccttg--ttttg--gttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 323  Q
    ||||||||| || ||||||||||||||||||||||||||  |||||  ||||||||||  |||||||||| || | ||||||| |||||||||||| |||    
T  40418758 aaatagaaagaacctaataaatgaaaagcatcttccttgatttttgttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagta 40418659  T
Q  324 agtggatcatccatcaagcaaatcctccaatggataaaaaggtct 368  Q
    | | |||||||| |||||||| ||||||||||||  |||||||||    
T  40418658 actagatcatccgtcaagcaagtcctccaatggaacaaaaggtct 40418614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 1850444 - 1850346
Alignment:
Q  142 ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac--------tagttgttcttgttatcggaataaata 232  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||        || ||||||||||||||||||||||||    
T  1850444 ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagtgaaaagaaccttttaagtatttgttcttgttatcggaataaata 1850346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 38988180 - 38988036
Alignment:
Q  228 aaatagaaaaaagctaataaatgaaaagcatcttccttgttt----tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 323  Q
    ||||||||| || |||||||||||| |||| |||||||| ||    | ||||||||||  ||||||||||||| | ||||||| |||||||||||| ||     
T  38988180 aaatagaaagaacctaataaatgaagagcagcttccttgattgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtg 38988081  T
Q  324 agtggatcatccatcaagcaaatcctccaatggataaaaaggtct 368  Q
    | | |||||||| |||||||| ||||||||||||| |||||||||    
T  38988080 actagatcatccgtcaagcaagtcctccaatggatcaaaaggtct 38988036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 39880297 - 39880151
Alignment:
Q  228 aaatagaaaaaagctaataaatgaaaagcatcttccttgttt-------tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt 320  Q
    ||||||||| || |||||||||||||||||||||||||| ||       |  |||||||||  || |||||||||| | ||||||| ||||||||||||     
T  39880297 aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaa-aaaacatcaacaaaagtgatttttgtttaagcta 39880199  T
Q  321 gtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtct 368  Q
    |||| | |||||||| |||||||| |||||||||||| ||||||||||    
T  39880198 gtaactagatcatccgtcaagcaagtcctccaatggaaaaaaaggtct 39880151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 39880540 - 39880491
Alignment:
Q  36 agtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg 85  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  39880540 agtgcaacatatggaagacaggaaagtaaatggtagggtgaggtgaaatg 39880491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 39726906 - 39726755
Alignment:
Q  228 aaatagaaaaaagctaataaatgaaaagcatcttcc-------ttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt 320  Q
    ||||||||| || |||||||||||||||||||||||       ||||| |  |||||||||  ||||||||||||| | | ||||| ||||||||||||     
T  39726906 aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagcta 39726807  T
Q  321 gtaa----gtggatcatccatcaagcaaatcctccaatggataaaaaggtct 368  Q
    ||||     | |||||||| |||||||| ||||||||||||| |||||||||    
T  39726806 gtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaaggtct 39726755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 39880405 - 39880327
Alignment:
Q  149 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa 230  Q
    |||||||||||||||||||||||||||||||| |||| ||   ||||||||||| ||   |||||||||| || ||||||||    
T  39880405 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa 39880327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 40418860 - 40418782
Alignment:
Q  149 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa 230  Q
    |||||||||||||||||||||||||||||||| |||| ||   ||||||||||| ||   |||||||||| || ||||||||    
T  40418860 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa 40418782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 38988282 - 38988229
Alignment:
Q  149 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag 202  Q
    |||||||||||||||||||||||||||||||| |||| ||   |||||||||||    
T  38988282 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag 38988229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 1162348 - 1162384
Alignment:
Q  6 agtgagaagaagtaaaactagccatgtttgagtgcaa 42  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  1162348 agtgaaaagaagtaaaactagccatgtttgattgcaa 1162384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 40419715 - 40419679
Alignment:
Q  6 agtgagaagaagtaaaactagccatgtttgagtgcaa 42  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  40419715 agtgaaaagaagtaaaactagccatatttgagtgcaa 40419679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 228 - 372
Target Start/End: Original strand, 44444395 - 44444543
Alignment:
Q  228 aaatagaaaaaagctaataaatgaaaagcatcttccttg----ttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 323  Q
    ||||||||| || ||||||||||||| |||| |||||||    |||| |||||||||   ||||||||||||| | ||||||| ||||||||||||||||    
T  44444395 aaatagaaataacctaataaatgaaaggcatattccttgattgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgta 44444494  T
Q  324 agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttcta 372  Q
    | | |||||||| |||||||| ||||| ||||||  ||||| |||||||    
T  44444495 actagatcatccgtcaagcaagtcctctaatggaacaaaagatcttcta 44444543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 25911951 - 25912046
Alignment:
Q  273 ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtct 368  Q
    |||||||||  ||||||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| ||||||||||||  |||||||||    
T  25911951 ttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaaggtct 25912046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 25911657 - 25911698
Alignment:
Q  43 cacatggaagacaggaaagtaaatggaagggtgaggtgaaat 84  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  25911657 cacatggaagacaggaaagtaaatggtagggtgaggtgaaat 25911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 25911785 - 25911821
Alignment:
Q  149 aataaacataaatatcaaacagaaattgcaaattgca 185  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  25911785 aataaacataagtatcaaacagaaattgcaaactgca 25911821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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