View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20770_low_8 (Length: 425)
Name: NF20770_low_8
Description: NF20770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20770_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 50 - 422
Target Start/End: Complemental strand, 29287703 - 29287330
Alignment:
| Q |
50 |
gcgcgtttgggagaaacaaacagaaacgcgcgcatctcaactgctgcaacagctgtggcatggcagaagtagtgtagcagatgcacctttgtgaagaaaa |
149 |
Q |
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| T |
29287703 |
gcgcgtttgggagaaacaaacagaaacacgcgcatctcaactgctgcaacagctgtggcatggcagaagtagtgtagcagatgcacctttgtgaagaaaa |
29287604 |
T |
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| Q |
150 |
cctgatatgtcgcgcggaaaatgcaacatagactcctatttttcctttaataaaaaccgaggtaggtgttgagatgtgtgttagaaacgagactcggagt |
249 |
Q |
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| T |
29287603 |
cctgatatgtcgtgcggaaaatgcaacatagactcctatttttcctttaataaaaaccgaggtaggtgttgagatgtgtgttagaaacgagactcggagt |
29287504 |
T |
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| Q |
250 |
tttgtgcttgctaggacagaatggttctcagtcgtttgttccatgatacatcattaat-nnnnnnnnngttcaaagagagaaggagttgatcgttttcca |
348 |
Q |
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| T |
29287503 |
tttgtgcttgctaggacataatggttctcactcgtttgttccatgatacatcattaataaaaaaataagttcaaagaatgaaggagttgatcgttttcca |
29287404 |
T |
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| Q |
349 |
gaaaacgaaacagattagttttgtcaagaattttcttctcattgatctattttggaggagttgatgatgtccat |
422 |
Q |
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| T |
29287403 |
gaaaatgaaacagattagttttgtcaagaattttcttctcattgatctattttggaggagttgatgttgtccat |
29287330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 35236436 - 35236168
Alignment:
| Q |
22 |
tgtggagaatttggaagagttggagcttgcgcgtttgggagaaacaaacagaaacgcgcgcatctcaactgctgcaacagctgtggcatggcagaagtag |
121 |
Q |
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| T |
35236436 |
tgtggagaatttggaagagtcggaacttgcgtgtttgggagaaacaaacagaaacacgcgca-ctca---gttgaaacagccgtggcatgggagaagcag |
35236341 |
T |
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| Q |
122 |
tgtagcagatgcacctttgtgaagaaaacctgatatgtcgcgcggaaaatgcaacatagactcctatttttcctttaataaaaaccgaggtaggtgttga |
221 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| |
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| T |
35236340 |
cgtggcagatgcacctttgtggagaaaacctgatatgtcgcgaggaaaatgcaacatagactcctatttttcttttaataaaaaccggggtaggttttga |
35236241 |
T |
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| Q |
222 |
gatgtgtgttagaaacgagactcggagttttgtgcttgctaggacagaatggttctcagtcgtttgttccatg |
294 |
Q |
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| T |
35236240 |
gatgtgtgttagagacgagactcggagttttgtacttgctgggacagaatggttctcgcccatttgttccatg |
35236168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 35235884 - 35235779
Alignment:
| Q |
317 |
gttcaaagagagaaggagttgatcgttttccagaaaacgaaacagattagttttgtcaagaattttcttctcattgatctattttggaggagttgatgat |
416 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
35235884 |
gttcaaagagaaaaggagttgatcgatttccagaaaacgaaatagattagttttgtcatgaattttcttctcattgatctattttggaggagttgatgtt |
35235785 |
T |
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| Q |
417 |
gtccat |
422 |
Q |
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|||||| |
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| T |
35235784 |
gtccat |
35235779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 29290873 - 29290835
Alignment:
| Q |
17 |
tacaatgtggagaatttggaagagttggagcttgcgcgt |
55 |
Q |
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| T |
29290873 |
tacaatgtggagaatttggaagagttggagcttgcgcgt |
29290835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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