View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20771_low_1 (Length: 470)

Name: NF20771_low_1
Description: NF20771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20771_low_1
NF20771_low_1
[»] chr5 (16 HSPs)
chr5 (10-446)||(1374663-1375099)
chr5 (13-339)||(32766392-32766726)
chr5 (302-453)||(2327469-2327615)
chr5 (343-452)||(32766252-32766356)
chr5 (13-92)||(30212991-30213070)
chr5 (223-366)||(30874529-30874673)
chr5 (271-378)||(8117435-8117539)
chr5 (393-453)||(30213014-30213074)
chr5 (387-452)||(28461240-28461305)
chr5 (10-92)||(30874649-30874731)
chr5 (388-449)||(1375017-1375078)
chr5 (301-369)||(37325799-37325864)
chr5 (408-453)||(8117372-8117417)
chr5 (215-270)||(37325872-37325927)
chr5 (42-92)||(2328902-2328951)
chr5 (388-453)||(30874670-30874735)
[»] chr4 (21 HSPs)
chr4 (10-453)||(54856996-54857437)
chr4 (130-452)||(49600303-49600618)
chr4 (220-453)||(12049794-12050023)
chr4 (215-453)||(51850365-51850595)
chr4 (10-115)||(49600583-49600688)
chr4 (10-115)||(19238231-19238336)
chr4 (301-453)||(3125158-3125301)
chr4 (230-326)||(8368086-8368182)
chr4 (387-455)||(8367980-8368048)
chr4 (395-453)||(52643404-52643462)
chr4 (388-453)||(34559431-34559496)
chr4 (388-449)||(49600606-49600667)
chr4 (9-92)||(8367986-8368070)
chr4 (10-90)||(34559410-34559490)
chr4 (25-92)||(52643408-52643475)
chr4 (388-449)||(19238252-19238313)
chr4 (294-369)||(34559362-34559437)
chr4 (43-92)||(3125162-3125211)
chr4 (36-89)||(12049801-12049854)
chr4 (269-338)||(52643497-52643566)
chr4 (132-172)||(19238303-19238343)
[»] chr7 (20 HSPs)
chr7 (31-470)||(24236850-24237298)
chr7 (82-361)||(37180273-37180556)
chr7 (215-452)||(48826149-48826384)
chr7 (276-453)||(19835304-19835480)
chr7 (220-453)||(13726348-13726579)
chr7 (220-459)||(21529810-21530046)
chr7 (269-453)||(24375494-24375680)
chr7 (258-369)||(22696190-22696301)
chr7 (297-378)||(19423918-19423998)
chr7 (287-378)||(2898491-2898580)
chr7 (387-445)||(2898407-2898465)
chr7 (387-449)||(24236849-24236911)
chr7 (394-443)||(37180181-37180230)
chr7 (36-92)||(13726352-13726408)
chr7 (31-88)||(2898407-2898464)
chr7 (36-89)||(21529823-21529876)
chr7 (408-453)||(43854289-43854334)
chr7 (36-92)||(19835308-19835364)
chr7 (71-115)||(37180469-37180513)
chr7 (51-92)||(43854293-43854334)
[»] chr1 (26 HSPs)
chr1 (10-440)||(44287659-44288075)
chr1 (214-453)||(31460856-31461091)
chr1 (220-452)||(50741329-50741562)
chr1 (215-453)||(32226035-32226263)
chr1 (352-468)||(36536542-36536659)
chr1 (10-88)||(33185030-33185108)
chr1 (276-369)||(19636107-19636200)
chr1 (396-453)||(25710901-25710958)
chr1 (220-378)||(36497079-36497237)
chr1 (287-359)||(36551411-36551482)
chr1 (10-79)||(33858179-33858246)
chr1 (10-79)||(33922677-33922744)
chr1 (388-453)||(33185051-33185116)
chr1 (220-301)||(37490724-37490804)
chr1 (398-445)||(19636052-19636099)
chr1 (42-88)||(19636052-19636098)
chr1 (42-92)||(25710904-25710954)
chr1 (159-209)||(33185180-33185230)
chr1 (388-449)||(44287993-44288054)
chr1 (31-92)||(50741332-50741393)
chr1 (36-92)||(36536562-36536618)
chr1 (37-92)||(32226204-32226259)
chr1 (311-366)||(33858148-33858203)
chr1 (311-366)||(33922720-33922775)
chr1 (288-338)||(25710793-25710842)
chr1 (36-89)||(31460863-31460916)
[»] chr2 (24 HSPs)
chr2 (66-371)||(17316070-17316379)
chr2 (130-419)||(7154536-7154822)
chr2 (220-453)||(29264329-29264565)
chr2 (10-115)||(17315976-17316081)
chr2 (282-453)||(35819279-35819446)
chr2 (10-115)||(7154466-7154571)
chr2 (215-453)||(45709710-45709941)
chr2 (31-92)||(35819283-35819344)
chr2 (395-453)||(43631559-43631617)
chr2 (388-453)||(7893299-7893363)
chr2 (269-326)||(12732745-12732802)
chr2 (388-449)||(17315997-17316058)
chr2 (10-92)||(43631527-43631613)
chr2 (269-336)||(7893201-7893269)
chr2 (10-92)||(7893278-7893359)
chr2 (51-92)||(12732821-12732862)
chr2 (31-92)||(29264333-29264394)
chr2 (215-361)||(33803351-33803494)
chr2 (215-361)||(33807833-33807976)
chr2 (10-56)||(36421983-36422029)
chr2 (388-449)||(7154487-7154548)
chr2 (408-453)||(12732821-12732866)
chr2 (221-270)||(35819443-35819492)
chr2 (220-268)||(21374833-21374881)
[»] chr3 (10 HSPs)
chr3 (130-378)||(41654208-41654455)
chr3 (10-111)||(41654424-41654525)
chr3 (390-453)||(30484916-30484979)
chr3 (387-453)||(47598773-47598839)
chr3 (10-92)||(30484893-30484975)
chr3 (283-358)||(30484833-30484909)
chr3 (269-369)||(31203683-31203783)
chr3 (388-447)||(41654445-41654504)
chr3 (387-453)||(13757070-13757136)
chr3 (36-92)||(13757076-13757132)
[»] chr8 (28 HSPs)
chr8 (137-358)||(14362233-14362454)
chr8 (191-378)||(22575919-22576106)
chr8 (10-196)||(22893092-22893288)
chr8 (271-453)||(25029567-25029749)
chr8 (10-95)||(14362460-14362545)
chr8 (10-95)||(14390748-14390832)
chr8 (10-196)||(20304892-20305084)
chr8 (10-196)||(21091525-21091717)
chr8 (47-111)||(22575844-22575908)
chr8 (270-365)||(27707897-27707993)
chr8 (288-453)||(28855357-28855528)
chr8 (291-378)||(13341633-13341721)
chr8 (406-453)||(14358712-14358759)
chr8 (180-218)||(14390880-14390918)
chr8 (388-449)||(14362463-14362524)
chr8 (388-449)||(14390768-14390829)
chr8 (130-175)||(22575877-22575922)
chr8 (388-449)||(22893113-22893174)
chr8 (387-453)||(27708005-27708073)
chr8 (401-449)||(42887911-42887959)
chr8 (44-92)||(42887911-42887959)
chr8 (10-56)||(5124538-5124584)
chr8 (28-89)||(5326583-5326644)
chr8 (404-449)||(22575844-22575889)
chr8 (411-467)||(22576131-22576188)
chr8 (43-92)||(25029571-25029620)
chr8 (31-92)||(28855361-28855422)
chr8 (44-92)||(27708021-27708069)
[»] scaffold0072 (2 HSPs)
scaffold0072 (276-453)||(6014-6194)
scaffold0072 (48-92)||(6146-6190)
[»] scaffold0172 (2 HSPs)
scaffold0172 (242-453)||(30668-30880)
scaffold0172 (31-92)||(30815-30876)
[»] chr6 (6 HSPs)
chr6 (288-453)||(31462427-31462593)
chr6 (215-453)||(2252008-2252243)
chr6 (288-339)||(8152498-8152549)
chr6 (36-92)||(31462533-31462589)
chr6 (36-89)||(2252183-2252236)
chr6 (281-365)||(15584593-15584677)
[»] scaffold0380 (1 HSPs)
scaffold0380 (269-450)||(10455-10638)
[»] scaffold0252 (2 HSPs)
scaffold0252 (269-378)||(16589-16699)
scaffold0252 (410-452)||(16748-16790)
[»] scaffold0024 (1 HSPs)
scaffold0024 (230-311)||(101695-101776)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 446
Target Start/End: Complemental strand, 1375099 - 1374663
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | ||||    
T  1375099 ataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaatcatacaaaacactcaaatc 1375000  T
Q  110 ttatga----ttttactcaaggatcattcataaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaatc 205  Q
    ||||||    ||||||||| | |||||||||||||||| | |||||||||||||||||||||||||| ||| || ||||||| |||| ||||||||||||    
T  1374999 ttatgaaagcttttactcatgaatcattcataaatcatacaaaacacccaaatcttatgaaagctttaaagtcttcaacatagtatcgaaagtcttaatc 1374900  T
Q  206 aaaattcaacataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtc 305  Q
    ||||||||||||| ||||||||||||||||||  ||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||  ||||    
T  1374899 aaaattcaacatagtagtcaatctcggatagcggtgcgtagaggccaacctcaaaagtgggatagcgggttagcgtatagtggtatgacaaatagtggtc 1374800  T
Q  306 accgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatata 405  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||| |||||||||||||||||||||||        |||||||||||||||||||    
T  1374799 accgatatttgattattttttgaacaaattacatgaataatgttataaaatataaacaaacttacatatttctaaaa----aaaacttatatttaatata 1374704  T
Q  406 aaattaaatataacgcttaaatctcatgagacattcataaa 446  Q
    ||||||| |||||  || ||||||||||||||| |||||||    
T  1374703 aaattaattataatactcaaatctcatgagacaatcataaa 1374663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 32766726 - 32766392
Alignment:
Q  13 atactataagttataaacaaacatatatctaatataaaattaaatatgacattca----aatctcatgaaatattcataaatcatacaaaacaccctaat 108  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||    |||||||||||| |||||||||||||||||||||||| |||    
T  32766726 atactataaattataaactaacatatatctaatataaaattaaatataacattcattcaaatctcatgaaacattcataaatcatacaaaacacccaaat 32766627  T
Q  109 cttatga----ttttactcaaggatcattcataaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaat 204  Q
     ||||||    ||||| ||| | |||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||||  ||| |||||||||||    
T  32766626 attatgaaagcttttagtcatgaatcattcataaatcatacaaaacacccaaatcttatgaaagctttaaagtctccaacatagcatcgaaagtcttaat 32766527  T
Q  205 caaaattcaacataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggt 304  Q
    |||||||||||||| ||||||||||||||||||  ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||  |||    
T  32766526 caaaattcaacatagtagtcaatctcggatagcggtgcgtagaggccgacctcaaaagtgggatagcgggttagcgtatagtggtatgacaaatagtggt 32766427  T
Q  305 caccgatatttgattattttttgaacaaattacat 339  Q
    |||| || | |||||||||||||||||||||||||    
T  32766426 cacccatgtatgattattttttgaacaaattacat 32766392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 302 - 453
Target Start/End: Original strand, 2327469 - 2327615
Alignment:
Q  302 ggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaa 401  Q
    ||||||||||||||||||||||||||||||||||| |||   |||| ||||||||||||||||||||| ||||||||        |||||||||||||||    
T  2327469 ggtcaccgatatttgattattttttgaacaaattagatgaaaaatgctataaagtataaacaaacttatatatttctcaacaaa-aaaacttatatttaa 2327567  T
Q  402 tataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||||    |||||  || ||||||||||||||||||||||||||||||    
T  2327568 tataaaat----tataaaactcaaatctcatgagacattcataaatcaaaac 2327615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 32766356 - 32766252
Alignment:
Q  343 taatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattca 442  Q
    ||||| ||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||| |||||| || ||||||||||||||||||     
T  32766356 taatgttataaagtataaacaaacttacatatttctaaa-----aaaaattatatttaatataaaattaattataacactcaaatctcatgagacattct 32766262  T
Q  443 taaatcaaaa 452  Q
     |||||||||    
T  32766261 aaaatcaaaa 32766252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 30212991 - 30213070
Alignment:
Q  13 atactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||||||||  | ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  30212991 atactataaagtgtaaacgaacatatatttaatataaaattaaatataacactcaaatctcatgaaatattcataaatca 30213070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 30874529 - 30874673
Alignment:
Q  223 tcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattatt 322  Q
    |||||| |||||||   ||||||| |||||  | ||||| ||||||| || | |||||||| |  ||||||||||||||| |||||||||||||||| ||    
T  30874529 tcaatcccggatagtggtgcgtagtggccgatcccaaaaatgggataatgagatagcgtattgcagtatgacaaataacgatcaccgatatttgattgtt 30874628  T
Q  323 -ttttgaacaaattacatgggtaatggtataaagtataaacaaac 366  Q
     ||||| ||||||||||||  ||||  ||||||||||||||||||    
T  30874629 attttggacaaattacatgaataatactataaagtataaacaaac 30874673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 378
Target Start/End: Complemental strand, 8117539 - 8117435
Alignment:
Q  271 tgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttac 370  Q
    |||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||||| || ||||| |||  |||| |   ||||||||||||||||||     
T  8117539 tgggatagcgtatagcggtatgacaaatagcggtcaccgatgtttgattattttttggac-aattatatgaataatag--caaagtataaacaaacttat 8117443  T
Q  371 atatttct 378  Q
    ||||||||    
T  8117442 atatttct 8117435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 30213014 - 30213074
Alignment:
Q  393 tatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||    
T  30213014 tatatttaatataaaattaaatataacactcaaatctcatgaaatattcataaatcaaaac 30213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 28461240 - 28461305
Alignment:
Q  387 aaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaa 452  Q
    ||||||||  |||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||    
T  28461240 aaaacttacttttaatataaaattaaatttaacacttaaatctcgtgagacactcataaatcaaaa 28461305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 30874649 - 30874731
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||||  ||  |||| ||| ||||| || |||||||||    
T  30874649 ataatactataaagtataaacaaacatatatttaatataaaattaaatatatcacccaaaactcgtgaaacatccataaatca 30874731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 1375078 - 1375017
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| |||||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  1375078 aaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaatca 1375017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 37325864 - 37325799
Alignment:
Q  301 cggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaactta 369  Q
    |||| |||| ||||||||||||||||| ||||||||||||   |||  |||||||||||||||||||||    
T  37325864 cggtgaccgctatttgattattttttggacaaattacatg---aattctataaagtataaacaaactta 37325799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 8117417 - 8117372
Alignment:
Q  408 attaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||||||| || |||||||| |||||||||||||||||||||    
T  8117417 attaaatataacactcaaatctcacgagacattcataaatcaaaac 8117372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 37325927 - 37325872
Alignment:
Q  215 cataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatag 270  Q
    |||| ||||||||| ||||||||  ||||||||||||| || ||||||||||||||    
T  37325927 catagtagtcaatcccggatagcggtgcgtagcggccgaccccaaaagtgggatag 37325872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 2328902 - 2328951
Alignment:
Q  42 taatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||||||||||    
T  2328902 taatattaaattaaatataatattcaaatctcatgaaa-attcataaatca 2328951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 30874670 - 30874735
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||| ||||||||||||||||||||||||| | |  ||| ||| ||| |||| |||||||||||||    
T  30874670 aaacatatatttaatataaaattaaatatatcacccaaaactcgtgaaacatccataaatcaaaac 30874735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 453
Target Start/End: Complemental strand, 54857437 - 54856996
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| ||||    
T  54857437 ataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaaatctcatggaacattcataaatcatacaaaacacccaaatc 54857338  T
Q  110 ttatga----ttttactcaaggatcattcataaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaatc 205  Q
    || |||    ||||||||| | |||||| ||| ||||| | |||||||||||||||||||||| |||||||  |  ||||||||||||||||||||||||    
T  54857337 ttttgaaagcttttactcatgaatcatttatatatcatacaaaacacccaaatcttatgaaaggtttcaagtttttaacataatatcaaaagtcttaatc 54857238  T
Q  206 aaaattcaacataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtc 305  Q
    ||| || |||||| ||||||||||||| ||||  ||||||| ||||  ||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  54857237 aaattt-aacatagtagtcaatctcgggtagcggtgcgtagaggccaacctcaaaagtgggatagcgggttagcgtatagcggtatgacaaatagcggtc 54857139  T
Q  306 accgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatata 405  Q
    || ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||  ||||||||        |||| |||||||||||| |    
T  54857138 acagatatttgattattttttgaacaaattacatgaataatagtataaagtataaacaaacttttatatttctaaa-----aaaaattatatttaataaa 54857044  T
Q  406 aaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    || ||||||||||| || ||||||||||||||||||||||||||||||    
T  54857043 aagttaaatataacactcaaatctcatgagacattcataaatcaaaac 54856996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 130 - 452
Target Start/End: Complemental strand, 49600618 - 49600303
Alignment:
Q  130 cattcataaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaatcaaaattcaacataatagtcaatct 229  Q
    |||||||||||||| | |||||||||||||||||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  49600618 cattcataaatcatacaaaacacccaaatcttatgaaagctttaaagtttccaacatagtatcaaaagtcttaatcaaaattcaacatagtagtcaatct 49600519  T
Q  230 cggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaa 329  Q
    ||||||||  || |||| | ||| |||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  49600518 cggatagcggtgtgtagagtccgacctcaaaagtgggatagcaggttagcgtatagtggtatgacaaatagtggtcaccgatatctgattattttttgaa 49600419  T
Q  330 caaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaatat-aacgcttaaatc 428  Q
    ||||||||||   ||||| |||| |||||||||||||||||||||||||        |||||||||||||||||||||||||| ||| || ||  |||||    
T  49600418 caaattacat-aataatgttatagagtataaacaaacttacatatttctaaa-----aaaacttatatttaatataaaattaattataaatgc--aaatc 49600327  T
Q  429 tcatgagacattcataaatcaaaa 452  Q
    ||||||||||||||||||||||||    
T  49600326 tcatgagacattcataaatcaaaa 49600303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 220 - 453
Target Start/End: Complemental strand, 12050023 - 12049794
Alignment:
Q  220 tagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgatt 319  Q
    ||||||||||| ||||||  |||||||| || | || |||||||||||||||||| || ||||||| ||||| ||||||| |||||||||||||||||||    
T  12050023 tagtcaatctcagatagcggtgcgtagcagctgaccccaaaagtgggatagtgggataacgtatagcggtataacaaatagcggtcaccgatatttgatt 12049924  T
Q  320 attttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaatataac 419  Q
    || ||||||||| ||||||||  ||||| ||||||||||||||||||||| ||||||||        ||||  |||||||||||||||||||||||||||    
T  12049923 atgttttgaacatattacatgaataatgatataaagtataaacaaacttatatatttctaaaa----aaaaactatatttaatataaaattaaatataac 12049828  T
Q  420 gcttaaatctcatgagacattcataaatcaaaac 453  Q
     || ||||||||||||||||||||||| ||||||    
T  12049827 actgaaatctcatgagacattcataaaacaaaac 12049794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 215 - 453
Target Start/End: Original strand, 51850365 - 51850595
Alignment:
Q  215 cataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatt 314  Q
    |||| ||||||| | ||||||||  ||||||||||||| || ||||||||||||||        ||||||||||||||||||||| ||||||||||||||    
T  51850365 catagtagtcaaccccggatagcggtgcgtagcggccgaccccaaaagtgggatag--------cgtatagtggtatgacaaatagcggtcaccgatatt 51850456  T
Q  315 tgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaat 414  Q
    ||||||||||||| ||||||||||||  ||||  ||||||| ||| ||||||||| ||||||||        ||||  | |||||||||||| |||||||    
T  51850457 tgattattttttggacaaattacatgaataatattataaagaatagacaaacttatatatttctcaacggaaaaaaactttatttaatataatattaaat 51850556  T
Q  415 ataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||| || ||||||| ||||||||||||||||||||||    
T  51850557 ataacactcaaatctcgtgagacattcataaatcaaaac 51850595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 49600688 - 49600583
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  49600688 ataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaatcatacaaaacacccaaatc 49600589  T
Q  110 ttatga 115  Q
    ||||||    
T  49600588 ttatga 49600583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 19238231 - 19238336
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||  ||||    
T  19238231 ataatactataaattaaaaacaaacatatatctaatataaaattaaatataacattcaaatctcatgacacgttcataaatcatacaaaacacctaaatc 19238330  T
Q  110 ttatga 115  Q
    ||||||    
T  19238331 ttatga 19238336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 301 - 453
Target Start/End: Complemental strand, 3125301 - 3125158
Alignment:
Q  301 cggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatattta 400  Q
    ||||||||||||||||||||||||||  ||||||||||||  ||||  ||| ||||||||||||||||| ||||||||        |||||  | |   |    
T  3125301 cggtcaccgatatttgattatttttttgacaaattacatgaataatactatgaagtataaacaaacttatatatttctca------aaaacgaaaa---a 3125211  T
Q  401 atataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  3125210 atataaaattaaatataacactcaaatctcacgagacattcataaatcaaaac 3125158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 8368182 - 8368086
Alignment:
Q  230 cggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattatttttt 326  Q
    ||||||| | |||||| |||||| ||  ||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  8368182 cggatagtagtgcgtatcggccgaccctaaaagtgggatagtgggatatcgtatagcggtatgacaaataacggtcaccaatatttgatcatttttt 8368086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 8368048 - 8367980
Alignment:
Q  387 aaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaacgc 455  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| | |||||| |||||||||||||    
T  8368048 aaaacttatatttaatataaaattaaatataacactcaaatctcataaaacattcttaaatcaaaacgc 8367980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 52643462 - 52643404
Alignment:
Q  395 tatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||    
T  52643462 tatttaatataaaattaaatataacactcaaatctcatgaaacattaataaatcaaaac 52643404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 34559431 - 34559496
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||||||||||||||||| ||||||||| || |||| |||| | |||||||||||| |||||    
T  34559431 aaacttatatttaatataaaatgaaatataacactcaaatatcatcaaacattcataaattaaaac 34559496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 49600667 - 49600606
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| |||||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  49600667 aaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaatca 49600606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 8368070 - 8367986
Alignment:
Q  9 gataatactataa-gttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||||||| |||  ||| |||| ||||| |||||||||||||||||| ||| ||||||||||| ||| |||| |||||||    
T  8368070 gataatactataaagtttaaaaaaaacttatatttaatataaaattaaatataacactcaaatctcataaaacattcttaaatca 8367986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 34559410 - 34559490
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaat 90  Q
    ||||||||||||   |||||||||| ||||| ||||||||||| |||||| ||| |||||| |||| ||| ||||||||||    
T  34559410 ataatactataaagcataaacaaacttatatttaatataaaatgaaatataacactcaaatatcatcaaacattcataaat 34559490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 52643475 - 52643408
Alignment:
Q  25 ataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||||||||  | ||| |||||||||||||||||| ||| ||||||||||||||| ||| ||||||||    
T  52643475 ataaacaaaattctatttaatataaaattaaatataacactcaaatctcatgaaacattaataaatca 52643408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 19238252 - 19238313
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| |||||||||||||||||||||  | ||||||||||| || |||||||||||    
T  19238252 aaacatatatctaatataaaattaaatataacattcaaatctcatgacacgttcataaatca 19238313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 34559362 - 34559437
Alignment:
Q  294 caaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaactta 369  Q
    |||||| ||||||| |||||||||||||||| ||  ||||||||||   ||||  ||||||| |||||||||||||    
T  34559362 caaatagcggtcactgatatttgattattttatggtcaaattacatcaataatactataaagcataaacaaactta 34559437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 3125211 - 3125162
Alignment:
Q  43 aatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||||||||||| ||| |||||||||| || | ||||||||||||    
T  3125211 aatataaaattaaatataacactcaaatctcacgagacattcataaatca 3125162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 12049854 - 12049801
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaa 89  Q
    ||||| |||||||||||||||||| ||| | ||||||||||| | |||||||||    
T  12049854 tatatttaatataaaattaaatataacactgaaatctcatgagacattcataaa 12049801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 52643566 - 52643497
Alignment:
Q  269 agtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattaca 338  Q
    |||||| |||||||||  |||||| |||| | | |||||||||||||||| |||||||| ||| ||||||    
T  52643566 agtgggatagcgtataacggtatgccaaaaagcagtcaccgatatttgatgattttttggacatattaca 52643497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 19238303 - 19238343
Alignment:
Q  132 ttcataaatcatgccaaacacccaaatcttatgaaagcttt 172  Q
    |||||||||||| | ||||||| ||||||||||||||||||    
T  19238303 ttcataaatcatacaaaacacctaaatcttatgaaagcttt 19238343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 31 - 470
Target Start/End: Original strand, 24236850 - 24237298
Alignment:
Q  31 aaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatcttatga----ttttactcaag 126  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||| |||||    ||||||||| |    
T  24236850 aaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaatcatataaaacacccaaatcgtatgaaagcttttactcatg 24236949  T
Q  127 gatcattcataaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaatcaaaattcaacataatagtcaa 226  Q
     |||||||||||||||| | ||||||| ||||||| |||||||||| |||   |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24236950 aatcattcataaatcatacaaaacacctaaatcttttgaaagctttaaagtaaccaacatagtatcaaaagtcttaatcaaaattcaacataatagtcaa 24237049  T
Q  227 tctcggatagcaa--tgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattatttt 324  Q
    ||||||||||||   ||||||  ||||| ||||||||||||||||    ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  24237050 tctcggatagcatagtgcgtaaaggccgacctcaaaagtgggatatcaagttagcgtatagtggtatgacaaatagtggtcaccgatatttgattatttt 24237149  T
Q  325 ttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaact----tatatttaatataaaattaaatataacg 420  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||||| |        ||||||    |||||||||||||||||||| |||| |     
T  24237150 ttgaacaaattacatgaataatgttataaagtataaacaaacttacatatttttttaaa---aaaacttacgtatatttaatataaaattaattatatca 24237246  T
Q  421 cttaaatctcatgagacatt-cataaatcaaaacg-caaaagtcaaaagata 470  Q
    || ||||||||||||||||| |||||||||||| | ||||| ||||||||||    
T  24237247 ctcaaatctcatgagacattccataaatcaaaatgccaaaaatcaaaagata 24237298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 82 - 361
Target Start/End: Complemental strand, 37180556 - 37180273
Alignment:
Q  82 ttcataaatcatacaaaacaccctaatcttatga----ttttactcaaggatcattcataaatcatgccaaacacccaaatcttatgaaagctttcaaga 177  Q
    ||||||||||||||||||||||| ||||||||||    ||||||||| | |||||||||||||||| | |||||||||||||||||||||||||| |||     
T  37180556 ttcataaatcatacaaaacacccaaatcttatgaaagcttttactcatgaatcattcataaatcatacaaaacacccaaatcttatgaaagctttaaagt 37180457  T
Q  178 ctccaacataatatcaaaagtcttaatcaaaattcaacataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggtta 277  Q
    || ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||  ||||||| ||||  ||||||||||||||||  ||||||    
T  37180456 cttcaacatagtatcgaaagtcttaatcaaaattcaacatagtagtcaatctctgatagcggtgcgtagaggccaacctcaaaagtgggatatcgggtta 37180357  T
Q  278 gcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaa 361  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||  ||||| ||| || ||||||    
T  37180356 gcgtattgtggtatgacaaatagtggtcaccgatatttgattattttttgaacaaattacatgaataatgttattaaatataaa 37180273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 215 - 452
Target Start/End: Complemental strand, 48826384 - 48826149
Alignment:
Q  215 cataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatt 314  Q
    |||| ||||||||||||||||||| ||||||| ||||| ||  ||||||||||||| ||| ||| |||||| |||||||||||||  ||||||||| |||    
T  48826384 catagtagtcaatctcggatagcagtgcgtagtggccgaccctaaaagtgggatagcgggatagagtatagcggtatgacaaatagtggtcaccgacatt 48826285  T
Q  315 tgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaat 414  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||        ||||  || ||||| |||||||||||||    
T  48826284 tgattattttttgaacaaattacatgaataatggtataaagtataaacaaacttgtatatttctaaaaaa--aaaaactagatttagtataaaattaaat 48826187  T
Q  415 ataacgcttaaatctcatgagacattcataaatcaaaa 452  Q
     |||| || ||||||||||||||||||||||| |||||    
T  48826186 gtaacactcaaatctcatgagacattcataaaacaaaa 48826149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 453
Target Start/End: Complemental strand, 19835480 - 19835304
Alignment:
Q  276 tagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatt 375  Q
    ||||||||||  |||||||||||| ||||||| ||||||||||||||||||| | ||||||||||  ||||  ||||||||||||||||||||| |||||    
T  19835480 tagcgtatagctgtatgacaaatagcggtcactgatatttgattattttttggagaaattacatgattaatactataaagtataaacaaacttatatatt 19835381  T
Q  376 tctnnnnnnncaaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||        |||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  19835380 tctcaacaaa-aaaaattatatttaatataaaattaaatataacactcgaatctcatgagacattcataaatcaaaac 19835304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 220 - 453
Target Start/End: Complemental strand, 13726579 - 13726348
Alignment:
Q  220 tagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgatt 319  Q
    |||| ||| |||||||||  || |||| || || |||||||||||||||||  || ||||||||||  |||||| | ||| ||||||| |||||||||||    
T  13726579 tagttaatatcggatagcggtgtgtagtggacgacctcaaaagtgggatag--ggatagcgtatagcagtatgaaatatagcggtcactgatatttgatt 13726482  T
Q  320 attttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaa-acttatatttaatataaaattaaatataa 418  Q
    |||||||| ||||||||||||  ||||  |||||| |||||||||||||| ||||||||        ||| | |||||||||||||||||||||||||||    
T  13726481 attttttggacaaattacatgaataatactataaa-tataaacaaacttatatatttctcaacaaaaaaataattatatttaatataaaattaaatataa 13726383  T
Q  419 cgcttaaatctcatgagacattcataaatcaaaac 453  Q
    | || ||||||||||||||||||||||||||||||    
T  13726382 cactcaaatctcatgagacattcataaatcaaaac 13726348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 220 - 459
Target Start/End: Complemental strand, 21530046 - 21529810
Alignment:
Q  220 tagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgatt 319  Q
    ||||||||||||||||||  ||||||||||| | ||  ||||||||||||| ||| ||| |||||  ||||||||||||| ||||| |||||| ||||||    
T  21530046 tagtcaatctcggatagcggtgcgtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcgccgataattgatt 21529947  T
Q  320 attttttgaacaaattacatgggtaat---ggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaatat 416  Q
    |||||| | ||||||| |||   ||||   || |||||||||||||||||||| ||||||||        |||||| |||||||||||||||||||||||    
T  21529946 attttt-gcacaaattgcattattaataagggcataaagtataaacaaacttatatatttctaaaa----aaaact-atatttaatataaaattaaatat 21529853  T
Q  417 aacgcttaaatctcatgagacattcataaatcaaaacgcaaaa 459  Q
    ||| || ||||||||||||||||||||||| |||||| |||||    
T  21529852 aacactcaaatctcatgagacattcataaaacaaaacacaaaa 21529810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 453
Target Start/End: Complemental strand, 24375680 - 24375494
Alignment:
Q  269 agtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaactt 368  Q
    |||||| |||||||||| ||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||  ||||  |||||| |||||||||||||    
T  24375680 agtgggatagcgtatagcggtataacaaatagcggtcaccgacatttgattattttttg-acaaattacatgaataatactataaactataaacaaactt 24375582  T
Q  369 acatatttct---nnnnnnncaaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    | ||||||||           |||||||||||||||||| ||||| |||||||  || |||||||| || |||| |||||||||||||    
T  24375581 atatatttctcaacaaaaaaaaaaacttatatttaatatcaaatttaatataatactcaaatctcaagaaacatgcataaatcaaaac 24375494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 369
Target Start/End: Original strand, 22696190 - 22696301
Alignment:
Q  258 aaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagta 357  Q
    |||||||||||||  || |||| ||||| ||||||| ||||||||| || |||||||||||||||||||| |||| |||||||  ||||  |||||||||    
T  22696190 aaaagtgggatagaaggatagcatatagcggtatgataaataacggccatcgatatttgattattttttggacaagttacatgtataatactataaagta 22696289  T
Q  358 taaacaaactta 369  Q
     |||||||||||    
T  22696290 caaacaaactta 22696301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 19423998 - 19423918
Alignment:
Q  297 ataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttct 378  Q
    ||||||||||||||||||||||||||||| || ||| |||||||  ||||  ||||||||||||||||||||| ||||||||    
T  19423998 ataacggtcaccgatatttgattatttttgga-caatttacatgaataatactataaagtataaacaaacttatatatttct 19423918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 2898580 - 2898491
Alignment:
Q  287 ggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttct 378  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||  |||   ||||||||||||||||||||  ||||||||    
T  2898580 ggtatgacaaatagcggtcaccgaaatttgattattttttggacaaa-tacatgaataa-actataaagtataaacaaacttgtatatttct 2898491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 2898465 - 2898407
Alignment:
Q  387 aaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataa 445  Q
    ||||||||||| ||||||||||||||||||||  || ||||||||||| ||||||||||    
T  2898465 aaaacttatatgtaatataaaattaaatataagactcaaatctcatgaaacattcataa 2898407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 449
Target Start/End: Original strand, 24236849 - 24236911
Alignment:
Q  387 aaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    ||||| ||||| |||||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  24236849 aaaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaatca 24236911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 37180230 - 37180181
Alignment:
Q  394 atatttaatataaaattaaatataacgcttaaatctcatgagacattcat 443  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  37180230 atatttaatataaaattaattataacactcaaatctcatgagacattcat 37180181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 13726408 - 13726352
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||| |||||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  13726408 tatatttaatataaaattaaatataacactcaaatctcatgagacattcataaatca 13726352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 2898464 - 2898407
Alignment:
Q  31 aaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataa 88  Q
    |||| ||||| |||||||||||||||||| | | ||||||||||||||| ||||||||    
T  2898464 aaacttatatgtaatataaaattaaatataagactcaaatctcatgaaacattcataa 2898407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 21529876 - 21529823
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaa 89  Q
    ||||| |||||||||||||||||| ||| ||||||||||||| | |||||||||    
T  21529876 tatatttaatataaaattaaatataacactcaaatctcatgagacattcataaa 21529823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 43854334 - 43854289
Alignment:
Q  408 attaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||||||| || ||||||||||| ||||||||||||||||||    
T  43854334 attaaatataacactcaaatctcatgaaacattcataaatcaaaac 43854289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 19835364 - 19835308
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||| |||||||||||||||||| ||| || |||||||||| | ||||||||||||    
T  19835364 tatatttaatataaaattaaatataacactcgaatctcatgagacattcataaatca 19835308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 37180513 - 37180469
Alignment:
Q  71 ctcatgaaatattcataaatcatacaaaacaccctaatcttatga 115  Q
    ||||||||  |||||||||||||||||||||||| ||||||||||    
T  37180513 ctcatgaatcattcataaatcatacaaaacacccaaatcttatga 37180469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 43854334 - 43854293
Alignment:
Q  51 attaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||    
T  43854334 attaaatataacactcaaatctcatgaaacattcataaatca 43854293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 8e-99; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 10 - 440
Target Start/End: Complemental strand, 44288075 - 44287659
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  44288075 ataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcatgaatcatacaaaacacccaaatc 44287976  T
Q  110 ttatga----ttttactcaaggatcattcataaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaatc 205  Q
    ||||||    ||||||||| | ||| || ||||||||| | ||||||| |||| |||||||||||||  || |||||||||| |||| || |||||||||    
T  44287975 ttatgaaagtttttactcatgaatcttttataaatcatacaaaacaccaaaatattatgaaagctttatagtctccaacatagtatcgaaggtcttaatc 44287876  T
Q  206 aaaattcaacataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtc 305  Q
    ||||||||||||| ||||||||||||||||||  ||||||| |||||  |||||||||||||||| | ||| || ||||||                |||    
T  44287875 aaaattcaacatagtagtcaatctcggatagcggtgcgtagaggccgatctcaaaagtgggatagcgtgttggcatatagt---------------tgtc 44287791  T
Q  306 accgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatata 405  Q
    | |||| ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||||||        |||||||||||||||||||    
T  44287790 atcgatgtttgattattttttgaacaaattacatgaataatgttataaagaataaacaaacttacatatttctaaaaa---aaaacttatatttaatata 44287694  T
Q  406 aaattaaatataacgcttaaatctcatgagacatt 440  Q
    ||||||| |||||| || |||||||||||||||||    
T  44287693 aaattaattataacactcaaatctcatgagacatt 44287659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 214 - 453
Target Start/End: Complemental strand, 31461091 - 31460856
Alignment:
Q  214 acataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatat 313  Q
    ||||| ||||||||||||||||||| ||||||||||||| || ||||||| |||||| ||| ||| |||||| | |||||||||||  ||| ||||||||    
T  31461091 acatagtagtcaatctcggatagcagtgcgtagcggccgaccccaaaagttggatagcgggatagagtatagcgttatgacaaatagtggttaccgatat 31460992  T
Q  314 ttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaa 413  Q
    |||||||||| ||||| ||||||||||  |||||||||||| |||||||||||||| || |||||       |||||  |||||||||||||||||||||    
T  31460991 ttgattatttgttgaataaattacatgaataatggtataaaatataaacaaacttatatgtttct----aaacaaaaactatatttaatataaaattaaa 31460896  T
Q  414 tataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||| || |||||||| |||||||||||||| ||||||    
T  31460895 tataacactcaaatctcaagagacattcataaaacaaaac 31460856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 220 - 452
Target Start/End: Complemental strand, 50741562 - 50741329
Alignment:
Q  220 tagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgatt 319  Q
    ||||||||| ||||||||  ||  ||||||||| || |||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||    
T  50741562 tagtcaatcccggatagcggtgtatagcggccgaccccaaaagtgggatagcgggatagcgtatagcggtatgacaaatagcggtcaccgatatttgatt 50741463  T
Q  320 attttttgaacaaattacatgggtaatggtataaagtataaacaaac-ttacatatttctnnnnnnncaaaacttatatttaatataaaattaaatataa 418  Q
    |||||||| ||||| ||||||  |  |  || |||||| |||||||| ||  ||||||||        ||||||||||||||||||||||||||||||||    
T  50741462 attttttggacaaactacatgaattgtactaaaaagtaaaaacaaactttgtatatttctcaacaaaaaaaacttatatttaatataaaattaaatataa 50741363  T
Q  419 cgcttaaatctcatgagacattcataaatcaaaa 452  Q
    | || |||| ||||||||||||||||||||||||    
T  50741362 cactcaaatttcatgagacattcataaatcaaaa 50741329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 215 - 453
Target Start/End: Original strand, 32226035 - 32226263
Alignment:
Q  215 cataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatt 314  Q
    |||| ||||||||||||||||||  || |||||||||| || ||||||||||||||        ||||||| ||| |||||||||  |||||||||||||    
T  32226035 catagtagtcaatctcggatagcggtgtgtagcggccgaccccaaaagtgggatag--------cgtatagcggtttgacaaatagtggtcaccgatatt 32226126  T
Q  315 tgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaactt---atatttaatataaaatta 411  Q
    |||||||||||||  |||||||||||  ||||||||||||||||||||||||||  ||||| ||        |||||||   ||||||||||||||||||    
T  32226127 tgattattttttg-gcaaattacatgaataatggtataaagtataaacaaacttgtatattgctaaaa----aaaacttataatatttaatataaaatta 32226221  T
Q  412 aatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  32226222 aatataaccctcaaatctcatgagacattcataaatcaaaac 32226263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 352 - 468
Target Start/End: Complemental strand, 36536659 - 36536542
Alignment:
Q  352 aaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaa 451  Q
    |||||||||||||||||||||||||||        | | ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  36536659 aaagtataaacaaacttacatatttctaaaaaaaaagagcttatatttaatataaaattaaaaataacactcaaatctcatgagacattcataaatcaaa 36536560  T
Q  452 acgcaaaag-tcaaaaga 468  Q
    |||| |||| ||||||||    
T  36536559 acgccaaagatcaaaaga 36536542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 33185030 - 33185108
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataa 88  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  33185030 ataatactataaagtataaacaaacatatatttaatataaaattaaatataacattcaaatctcatgaaacattcataa 33185108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 369
Target Start/End: Complemental strand, 19636200 - 19636107
Alignment:
Q  276 tagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaactta 369  Q
    ||||||||||  |||||||||||| ||||| |||||||| |||||||||||| ||||||||||||  ||||   ||||||||||||||||||||    
T  19636200 tagcgtatagcagtatgacaaatagcggtcgccgatattggattattttttggacaaattacatgaataatacgataaagtataaacaaactta 19636107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 25710901 - 25710958
Alignment:
Q  396 atttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  25710901 atttaatataaaattaaatataacactcaaatctcatgagacattcataaatcaaaac 25710958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 378
Target Start/End: Complemental strand, 36497237 - 36497079
Alignment:
Q  220 tagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgatt 319  Q
    ||||||||| || |||||  |||| ||| ||||  | ||||||||||||||  || ||| |||||| ||||||||||||| ||||||| |||||||||||    
T  36497237 tagtcaatcccgaatagcggtgcgcagcagccgatcccaaaagtgggatagcaggatagtgtatagcggtatgacaaatagcggtcactgatatttgatt 36497138  T
Q  320 attttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttct 378  Q
    ||||| |  ||||| ||||||  ||||  |||||| || ||||||||||  ||||||||    
T  36497137 attttgttgacaaactacatgaataatactataaaatacaaacaaacttgtatatttct 36497079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 36551482 - 36551411
Alignment:
Q  287 ggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtata 359  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||  ||||| |||||||||||    
T  36551482 ggtatgacaaatagcggtcaccgatatttgattat-ttttgaacaaatcacatgaataatgttataaagtata 36551411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 33858179 - 33858246
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaa 79  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||    
T  33858179 ataatactataaagtataaacaaacatatatttaatataaaattaaatataaca--caaatctcatgaaa 33858246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 33922744 - 33922677
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaa 79  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||    
T  33922744 ataatactataaagtataaacaaacatatatttaatataaaattaaatataaca--caaatctcatgaaa 33922677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 33185051 - 33185116
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||| |||||||||||||||||||||||||||  | ||||||||||| |||||||||| |||||||    
T  33185051 aaacatatatttaatataaaattaaatataacattcaaatctcatgaaacattcataagtcaaaac 33185116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 37490724 - 37490804
Alignment:
Q  220 tagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataac 301  Q
    |||||||||| ||||| || ||||||||||||| || |||||| ||||||| ||| |||||||||| |||||||||||||||    
T  37490724 tagtcaatcttggatatcagtgcgtagcggccgaccccaaaag-gggatagcgggatagcgtatagcggtatgacaaataac 37490804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 19636099 - 19636052
Alignment:
Q  398 ttaatataaaattaaatataacgcttaaatctcatgagacattcataa 445  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||||    
T  19636099 ttaatataaaattaaatataacactcaaatctcatgaaacattcataa 19636052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 19636098 - 19636052
Alignment:
Q  42 taatataaaattaaatatgacattcaaatctcatgaaatattcataa 88  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  19636098 taatataaaattaaatataacactcaaatctcatgaaacattcataa 19636052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 25710904 - 25710954
Alignment:
Q  42 taatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  25710904 taatataaaattaaatataacactcaaatctcatgagacattcataaatca 25710954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 33185180 - 33185230
Alignment:
Q  159 cttatgaaagctttcaagactccaacataatatcaaaagtcttaatcaaaa 209  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||||||||||    
T  33185180 cttatgaaagctttcaagtctccaacaaaatttcacaagtcttaatcaaaa 33185230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 44288054 - 44287993
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| |||||||||||||||||||||  | ||||||||||| |||||||| |||||    
T  44288054 aaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcatgaatca 44287993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 50741393 - 50741332
Alignment:
Q  31 aaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||| ||||| |||||||||||||||||| ||| |||||| |||||| | ||||||||||||    
T  50741393 aaacttatatttaatataaaattaaatataacactcaaatttcatgagacattcataaatca 50741332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 36536618 - 36536562
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||| ||||||||||||||| || ||| ||||||||||||| | ||||||||||||    
T  36536618 tatatttaatataaaattaaaaataacactcaaatctcatgagacattcataaatca 36536562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 32226204 - 32226259
Alignment:
Q  37 atatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||| |||||||||||||||||| ||  ||||||||||||| | ||||||||||||    
T  32226204 atatttaatataaaattaaatataaccctcaaatctcatgagacattcataaatca 32226259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 33858148 - 33858203
Alignment:
Q  311 tatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaac 366  Q
    |||||||| |||||||| ||||||||||||  ||||  ||||||||||||||||||    
T  33858148 tatttgatcattttttggacaaattacatgaataatactataaagtataaacaaac 33858203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 33922775 - 33922720
Alignment:
Q  311 tatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaac 366  Q
    |||||||| |||||||| ||||||||||||  ||||  ||||||||||||||||||    
T  33922775 tatttgatcattttttggacaaattacatgaataatactataaagtataaacaaac 33922720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 25710793 - 25710842
Alignment:
Q  288 gtatgacaaataacggtcaccgatatttgattattttttgaacaaattaca 338  Q
    |||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  25710793 gtataacaaatagcggtcaccgatatttgatta-tttttggacaaattaca 25710842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 31460916 - 31460863
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaa 89  Q
    ||||| |||||||||||||||||| ||| |||||||||| || | |||||||||    
T  31460916 tatatttaatataaaattaaatataacactcaaatctcaagagacattcataaa 31460863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 66 - 371
Target Start/End: Original strand, 17316070 - 17316379
Alignment:
Q  66 caaatctcatgaaatattcataaatcatacaaaacaccctaatcttatga----ttttactcaaggatcattcataaatcatgccaaacacccaaatctt 161  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||    ||||||||| | |||||||||||||||| | |||||||||||||||    
T  17316070 caaatctcatgaaacattcataaatcatacaaaacacccaactcttatgaaagcttttactcatgaatcattcataaatcatacaaaacacccaaatctt 17316169  T
Q  162 atgaaagctttcaagactccaacataatatcaaaagtcttaatcaaaattcaacataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaa 261  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||   |||||| ||||| | ||||||    
T  17316170 atgatagctttcaagtctccaacataacatcaaaagtcttaatcaaaattcaacatagtagtcaatctcggatagcggcgcgtagaggccgacttcaaaa 17316269  T
Q  262 gtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaa 361  Q
    ||||||||| || |||||||||| ||||||| ||||||  ||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||||||    
T  17316270 gtgggatagcggcttagcgtataatggtatgccaaatagtggtcaccgatattggattattttttgaacaaattacatgaataatgttataaagtataaa 17316369  T
Q  362 caaacttaca 371  Q
     ||| |||||    
T  17316370 taaaattaca 17316379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 130 - 419
Target Start/End: Original strand, 7154536 - 7154822
Alignment:
Q  130 cattcataaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaatcaaaattcaacataatagtcaatct 229  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  7154536 cattcataaatcatacaaaacacccaaatcttatgaaagctttcaagtctctaacataatatcaaaagacttgatcaaaattcaacatagtagtcaatct 7154635  T
Q  230 cggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaa 329  Q
    ||||| ||| ||| ||  ||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||    
T  7154636 cggattgcagtgcataatggccgaccttaaaagtgggatagcgggttagcgtatagtggtatgacaaat-agtgttaccgatatttgattattttttgaa 7154734  T
Q  330 -caaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnncaaaacttatatttaatataaaattaaatataac 419  Q
     ||||| |||||  ||| ||||||||||||||||||||||| |||||| |        |||||||||||||||||||||||||||||||||    
T  7154735 ccaaatgacatgaataagggtataaagtataaacaaacttatatatttttaaaca---aaaacttatatttaatataaaattaaatataac 7154822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 220 - 453
Target Start/End: Complemental strand, 29264565 - 29264329
Alignment:
Q  220 tagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgatt 319  Q
    |||||||| |||| ||||| ||||||||||||  || ||||| |||||||| ||| |||||||||| ||||||||||| |  ||||||||||||||||||    
T  29264565 tagtcaatatcggctagcagtgcgtagcggccaaccccaaaaatgggatagcgggatagcgtatagcggtatgacaaaaagtggtcaccgatatttgatt 29264466  T
Q  320 attttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttct---nnnnnnncaaaacttatatttaatataaaattaaatat 416  Q
    |||||||| ||||||||||||  ||||  ||||||||||||||||||||| | ||||||           ||||||||||||||||||||||||||||||    
T  29264465 attttttggacaaattacatgaataatactataaagtataaacaaacttataaatttctcaacaaaaaaaaaaacttatatttaatataaaattaaatat 29264366  T
Q  417 aacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||| || |||||||| |||||||||||||||||||||    
T  29264365 aacactcaaatctcacgagacattcataaatcaaaac 29264329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 17315976 - 17316081
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  17315976 ataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaatcatacaaaacacccaaatc 17316075  T
Q  110 ttatga 115  Q
    | ||||    
T  17316076 tcatga 17316081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 282 - 453
Target Start/End: Complemental strand, 35819446 - 35819279
Alignment:
Q  282 atagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnn 381  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  |||||   ||||||||||||||||||  |||||| |       
T  35819446 atagcggtattacaaatagcggtcaccgatatttgattattttttgaacaaattacatgaataatg---taaagtataaacaaacttgtatatttgtaaa 35819350  T
Q  382 nnnncaaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
         ||||| |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  35819349 ataa-aaaacatatatttaatataaaattaaatataacattcaaatctcatgagacattcataaatcaaaac 35819279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 7154466 - 7154571
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    ||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  7154466 ataatactaaaaattataaacaaacatatatctaatataaaattagatataacattcaaatctcataaaacattcataaatcatacaaaacacccaaatc 7154565  T
Q  110 ttatga 115  Q
    ||||||    
T  7154566 ttatga 7154571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 215 - 453
Target Start/End: Original strand, 45709710 - 45709941
Alignment:
Q  215 cataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatt 314  Q
    |||| ||||||||||||||| ||| ||| ||||||||| || ||||| ||||||||||        ||||  ||||| ||||| | ||||||||| ||||    
T  45709710 catagtagtcaatctcggatggcagtgcatagcggccgaccccaaaaatgggatagtg--------tataacggtataacaaagagcggtcaccggtatt 45709801  T
Q  315 tgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnnc--aaaacttatatttaatataaaattaa 412  Q
    ||||||||||| | |||||||| | |  ||||  ||||||||||||||||||||| ||| ||||          ||||| ||||||||||||||||||||    
T  45709802 tgattatttttaggacaaattataagaataatactataaagtataaacaaacttaaatagttctcgacaaaatgaaaacatatatttaatataaaattaa 45709901  T
Q  413 atataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||| || |||| ||| |||||||||| ||||||||||    
T  45709902 atataacactaaaatatcaggagacattca-aaatcaaaac 45709941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 35819344 - 35819283
Alignment:
Q  31 aaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  35819344 aaacatatatttaatataaaattaaatataacattcaaatctcatgagacattcataaatca 35819283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 453
Target Start/End: Original strand, 43631559 - 43631617
Alignment:
Q  395 tatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||||||||||||||||||||  || ||||||||||| ||||||||||||||||||    
T  43631559 tatttaatataaaattaaatataaaactcaaatctcatgaaacattcataaatcaaaac 43631617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 7893299 - 7893363
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||||||||||||||| ||||||||||| | ||||||| |||| ||||||||||||||||||    
T  7893299 aaacttatatttaatataaa-ttaaatataacacctaaatctaatgaaacattcataaatcaaaac 7893363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 12732745 - 12732802
Alignment:
Q  269 agtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattatttttt 326  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  12732745 agtgggatagcgtatagcggtatgacaaataccggtcaccgatatttgatgatttttt 12732802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 17315997 - 17316058
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| |||||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  17315997 aaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaatca 17316058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 43631527 - 43631613
Alignment:
Q  10 ataatactataagttataaacaaacatatatcta----atataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||||||  |||||||||||| |||| ||    |||||||||||||||| | | ||||||||||||||| ||||||||||||    
T  43631527 ataatactataaagtataaacaaacacatatttatttaatataaaattaaatataaaactcaaatctcatgaaacattcataaatca 43631613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 7893201 - 7893269
Alignment:
Q  269 agtgggttagcgtatagtggtat--gacaaataacggtcaccgatatttgattattttttgaacaaatta 336  Q
    |||||| ||||||||| ||||||  || |||||||||| | |||||||||||||||||||||||||||||    
T  7893201 agtgggatagcgtataatggtatatgataaataacggt-atcgatatttgattattttttgaacaaatta 7893269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 7893278 - 7893359
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||||||  ||||||||||| ||||| |||||| ||||||||||| |||   |||||| |||||| ||||||||||||    
T  7893278 ataatactataaagtataaacaaacttatatttaatat-aaattaaatataacacctaaatctaatgaaacattcataaatca 7893359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 12732821 - 12732862
Alignment:
Q  51 attaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  12732821 attaaatataacactcaaatctcatgaaatattcataaatca 12732862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 29264394 - 29264333
Alignment:
Q  31 aaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||| || | ||||||||||||    
T  29264394 aaacttatatttaatataaaattaaatataacactcaaatctcacgagacattcataaatca 29264333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 33803351 - 33803494
Alignment:
Q  215 cataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatt 314  Q
    |||| ||| |||||||||||||   || |||||||||| |||||||||| ||||||  || |  |||||||  |||||||||||||||||||   |||||    
T  33803351 catagtagccaatctcggatagtggtgtgtagcggccgacctcaaaagtaggatagcaggatcacgtatagcagtatgacaaataacggtcatttatatt 33803450  T
Q  315 tgattattttttgaacaaattacatgggtaatggtataaagtataaa 361  Q
    | ||| | ||||| | ||||||||    ||||| |||||||||||||    
T  33803451 ttattttattttggataaattaca---ctaatgctataaagtataaa 33803494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 33807833 - 33807976
Alignment:
Q  215 cataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatt 314  Q
    |||| ||| |||||||||||||   || |||||||||| |||||||||| ||||||  || |  |||||||  |||||||||||||||||||   |||||    
T  33807833 catagtagccaatctcggatagtggtgtgtagcggccgacctcaaaagtaggatagcaggatcacgtatagcagtatgacaaataacggtcatttatatt 33807932  T
Q  315 tgattattttttgaacaaattacatgggtaatggtataaagtataaa 361  Q
    | ||| | ||||| | ||||||||    ||||| |||||||||||||    
T  33807933 ttattttattttggataaattaca---ctaatgctataaagtataaa 33807976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 36421983 - 36422029
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaa 56  Q
    ||||||||||||  |||||| |||||||||| |||||||||||||||    
T  36421983 ataatactataaagtataaataaacatatatttaatataaaattaaa 36422029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 7154487 - 7154548
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| ||||||||||||| |||||||  | ||||||||| | ||||||||||||||    
T  7154487 aaacatatatctaatataaaattagatataacattcaaatctcataaaacattcataaatca 7154548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 453
Target Start/End: Original strand, 12732821 - 12732866
Alignment:
Q  408 attaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||||||| || ||||||||||| | ||||||||||||||||    
T  12732821 attaaatataacactcaaatctcatgaaatattcataaatcaaaac 12732866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 35819492 - 35819443
Alignment:
Q  221 agtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatag 270  Q
    |||||||||| ||||||   |||||||||||| |||||||||||||||||    
T  35819492 agtcaatctcagatagcggcgcgtagcggccgacctcaaaagtgggatag 35819443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 21374833 - 21374881
Alignment:
Q  220 tagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggat 268  Q
    ||||||||| ||||||||  |||| |||||||| |||||||||||||||    
T  21374833 tagtcaatcccggatagcgctgcggagcggccgacctcaaaagtgggat 21374881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 130 - 378
Target Start/End: Complemental strand, 41654455 - 41654208
Alignment:
Q  130 cattcataaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaatcaaaattcaacataatagtcaatct 229  Q
    ||||||||||| || | ||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  41654455 cattcataaataatacaaaacacccaaatcttgtgaaagctttaaagtctacaacataatatcaaaagtcttaatcaaaattcaacatagcagtcaatct 41654356  T
Q  230 cggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaa 329  Q
     ||||||   ||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||     
T  41654355 aggatagtggtgcgtagcggccgacctcaaaagtgggataacgggttagcgtgtagtggtatgacaaatagcagtcactgatatttgattatattttgac 41654256  T
Q  330 caaattacatgggtaatggtataaagtataaacaaacttacatatttct 378  Q
    |||||||||||  ||| |||||||||||| ||||| |||||||||||||    
T  41654255 caaattacatgaataacggtataaagtat-aacaagcttacatatttct 41654208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 41654525 - 41654424
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  41654525 ataatagtataaattataaacaaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaataatacaaaacacccaaatc 41654426  T
Q  110 tt 111  Q
    ||    
T  41654425 tt 41654424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 30484916 - 30484979
Alignment:
Q  390 acttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||    
T  30484916 acttatatttaatataaaattaaatataacactcagatctcatgaaacattcataaatcaaaac 30484979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 47598839 - 47598773
Alignment:
Q  387 aaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||||||||||||||||||| |||||||||||  || |||||||| |||||||| ||||||||||||    
T  47598839 aaaacttatatttaatataatattaaatataagactcaaatctcacgagacatttataaatcaaaac 47598773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 30484893 - 30484975
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||||||  ||| || | || ||||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  30484893 ataatactataaagtattaaaacacttatatttaatataaaattaaatataacactcagatctcatgaaacattcataaatca 30484975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 30484833 - 30484909
Alignment:
Q  283 tagtggtatgacaaataacggtcaccgatatttgatta-ttttttgaacaaattacatgggtaatggtataaagtat 358  Q
    |||||||||| |||||| |||||||| ||||||||||| ||||||| ||||||||||||  ||||  ||||||||||    
T  30484833 tagtggtatggcaaatagcggtcaccaatatttgattatttttttgtacaaattacatgaataatactataaagtat 30484909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 31203783 - 31203683
Alignment:
Q  269 agtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaactt 368  Q
    |||||| |||| ||||| ||| ||| |||||  ||| |||||||||||||||||||||| |||||||||||   ||||  |||||  |||||||||||||    
T  31203783 agtgggatagcatatagcggtgtgaaaaatagaggttaccgatatttgattattttttggacaaattacataaataatactataagatataaacaaactt 31203684  T
Q  369 a 369  Q
    |    
T  31203683 a 31203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 41654504 - 41654445
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaat 447  Q
    |||| ||||| |||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  41654504 aaacatatatctaatataaaattaaatataacattcaaatctcatgaaacattcataaat 41654445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 453
Target Start/End: Original strand, 13757070 - 13757136
Alignment:
Q  387 aaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||| |||||||||||||||||||||||||||| || || ||| || | | |||||| |||||||||    
T  13757070 aaaaattatatttaatataaaattaaatataacactcaattctaataaaatattcatgaatcaaaac 13757136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 13757076 - 13757132
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||| |||||||||||||||||| ||| |||| ||| || |||||||||| |||||    
T  13757076 tatatttaatataaaattaaatataacactcaattctaataaaatattcatgaatca 13757132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 9e-65; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 137 - 358
Target Start/End: Complemental strand, 14362454 - 14362233
Alignment:
Q  137 aaatcatgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaagtcttaatcaaaattcaacataatagtcaatctcggatag 236  Q
    ||||||| | ||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  14362454 aaatcatacaaaacacccaaatcttattaaaggtttcaagtcaccaacataatatcaaaagtcttaatcaaaattcaacatagtagtcaatctcgggtag 14362355  T
Q  237 caatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaatta 336  Q
    |  ||| ||| ||||| ||| ||||| ||||||| ||||||||||| ||  |||||||||||  |||||||||||||||||||||||||| |||||||||    
T  14362354 cggtgcttagaggccgaccttaaaagagggatagcgggttagcgtacagcagtatgacaaattgcggtcaccgatatttgattatttttttaacaaatta 14362255  T
Q  337 catgggtaatggtataaagtat 358  Q
    ||||  ||||||||||||||||    
T  14362254 catgaataatggtataaagtat 14362233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 191 - 378
Target Start/End: Original strand, 22575919 - 22576106
Alignment:
Q  191 tcaaaagtcttaatcaaaattcaacataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggta 290  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||  |||||||||| ||| |||||||||||||||||  ||||| ||| ||||||||    
T  22575919 tcaaaagtcttaatcaaaattcaacatagtagtcaatctaggatagtgatgcgtagcgtccgacctcaaaagtgggatagctggttaacgtgtagtggta 22576018  T
Q  291 tgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttct 378  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||| ||  |||||||||||||||||||||||||| |||||||||    
T  22576019 tgacaaatagcggtcaccgatatttgattatattttgaacaaattacttgaataatggtataaagtataaacaaacttgcatatttct 22576106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 22893092 - 22893288
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||||||||||||| ||||    
T  22893092 ataatactataaattataaacaaacatatatctaatataaaattaaatatagcattcaaatctcatgacacattcataaatcatacaaaacacccaaatc 22893191  T
Q  110 ttatga----ttttactcaaggatcattcataaatca-------tgccaaacacccaaatcttatgaaagctttcaagactccaacataatatcaaaa 196  Q
    ||||||    |||||||| |  |||||||||||||||       | | || |||| |||||||||||||||||||||| ||||||||||| |||||||    
T  22893192 ttatgaaaacttttactc-ataatcattcataaatcattaaagttacaaaccaccaaaatcttatgaaagctttcaagtctccaacataaaatcaaaa 22893288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 271 - 453
Target Start/End: Complemental strand, 25029749 - 25029567
Alignment:
Q  271 tgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttac 370  Q
    |||| ||| ||||||  |||||||||||| ||||||| |||||||||||| |||||| ||||||||||||  || |  |||||||||||||||||||||     
T  25029749 tgggatagtgtatagcagtatgacaaatagcggtcacggatatttgattaatttttggacaaattacatgaatattactataaagtataaacaaacttat 25029650  T
Q  371 atatttctnnnnnnncaaaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||||        |||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  25029649 atatttctcaaaaaaaaaaacttatattcaatataaaattgaatataacactcaaatctcatgagacattcataaatcaaaac 25029567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 14362545 - 14362460
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatac 95  Q
    |||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  14362545 ataatactataaattataaacaaacatatatgtactataaaattaaatataacattcaaatctcatgaaacattcataaatcatac 14362460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 14390748 - 14390832
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatac 95  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  14390748 ataatactataa-ttataaacaaacatatatctattataaaattaaatataacattcaaatctcatgaaacattcataaatcatac 14390832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 20304892 - 20305084
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    ||||| |||||| ||||||||||||||||||||||||||||||     || ||||||||||||||||| | ||||||||||| |||||||||| | ||||    
T  20304892 ataattctataaattataaacaaacatatatctaatataaaat-----ataacattcaaatctcatgacacattcataaatcgtacaaaacactcaaatc 20304986  T
Q  110 ttatga----ttttactcaaggatcattcataaatcatgc-------caaa-cacccaaatcttatgaaagctttcaagactccaacataatatcaaaa 196  Q
     |||||    |||||| | |  |||||||||||||||| |       |||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  20304987 atatgaaagcttttac-ccataatcattcataaatcattcaaagttacaaaccaccaaaatcttatgaaagctttcaagtctccaacataatatcaaaa 20305084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 21091525 - 21091717
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatc 109  Q
    ||||| |||||| ||||||||||||||||||||||||||||||     || ||||||||||||||||| | ||||||||||| |||||||||| | ||||    
T  21091525 ataattctataaattataaacaaacatatatctaatataaaat-----ataacattcaaatctcatgacacattcataaatcgtacaaaacactcaaatc 21091619  T
Q  110 ttatga----ttttactcaaggatcattcataaatcatgc-------caaa-cacccaaatcttatgaaagctttcaagactccaacataatatcaaaa 196  Q
     |||||    |||||| | |  |||||||||||||||| |       |||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  21091620 atatgaaagcttttac-ccataatcattcataaatcattcaaagttacaaaccaccaaaatcttatgaaagctttcaagtctccaacataatatcaaaa 21091717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 22575844 - 22575908
Alignment:
Q  47 taaaattaaatatgacattcaaatctcatgaaatattcataaatcatacaaaacaccctaatctt 111  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  22575844 taaaattaaatataacattcaaatctcatgaaacattcataaatcatacaaaacacccaaatctt 22575908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 365
Target Start/End: Original strand, 27707897 - 27707993
Alignment:
Q  270 gtgggttagcgtatagtggtatgacaaataacggtcaccgatattt-gattattttttgaacaaattacatgggtaatggtataaagtataaacaaa 365  Q
    ||||| |||||||||| ||||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||  ||||  |||||||||||||||||    
T  27707897 gtgggatagcgtatagcggtatgacaaatagcggtcactgatattttgattattttttggacaaattacatgaataatactataaagtataaacaaa 27707993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 453
Target Start/End: Complemental strand, 28855528 - 28855357
Alignment:
Q  288 gtatgacaaataacggtcaccgatatttgattatttttt-gaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnnc 386  Q
    |||||||||||| |||||| | ||||||||| ||||||| | ||||||||||||  ||||  |||| |||||||||||||||  ||||||||            
T  28855528 gtatgacaaatagcggtcatcaatatttgatcatttttttggacaaattacatgaataatattatagagtataaacaaactttaatatttctcagaagaa 28855429  T
Q  387 aaaa-----cttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||     |||||||||||||||||||| |||||||| || |||| |||||| || |||||||||||||||    
T  28855428 aaaaaaaaacttatatttaatataaaatttaatataacactcaaatatcatgaaaccttcataaatcaaaac 28855357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 378
Target Start/End: Complemental strand, 13341721 - 13341633
Alignment:
Q  291 tgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggt-ataaagtataaacaaacttacatatttct 378  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||  |  ||||||||||||||||||  ||||||||    
T  13341721 tgacaaatagcggtcaccgatatttgattattttttggacaaattacatgaataatactgttaaagtataaacaaacttgtatatttct 13341633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 453
Target Start/End: Complemental strand, 14358759 - 14358712
Alignment:
Q  406 aaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14358759 aaattaaatataacaattaaatctcatgagacattcataaatcaaaac 14358712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 14390880 - 14390918
Alignment:
Q  180 ccaacataatatcaaaagtcttaatcaaaattcaacata 218  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14390880 ccaacataatatcaaaagtcttaatcaaaattcaacata 14390918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 14362524 - 14362463
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| || ||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  14362524 aaacatatatgtactataaaattaaatataacattcaaatctcatgaaacattcataaatca 14362463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 14390768 - 14390829
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| || ||||||||||||||||||  | ||||||||||| ||||||||||||||    
T  14390768 aaacatatatctattataaaattaaatataacattcaaatctcatgaaacattcataaatca 14390829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 22575877 - 22575922
Alignment:
Q  130 cattcataaatcatgccaaacacccaaatcttatgaaagctttcaa 175  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||    
T  22575877 cattcataaatcatacaaaacacccaaatcttgtgaaagctttcaa 22575922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 22893113 - 22893174
Alignment:
Q  388 aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    |||| ||||| ||||||||||||||||||| |  | ||||||||||| ||||||||||||||    
T  22893113 aaacatatatctaatataaaattaaatatagcattcaaatctcatgacacattcataaatca 22893174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 453
Target Start/End: Original strand, 27708005 - 27708073
Alignment:
Q  387 aaaacttatatttaatat--aaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||| |||| ||||||||  |||||||||| |||| || ||||||||||| ||||||||||||||||||    
T  27708005 aaaaattatgtttaatatataaaattaaatttaacactcaaatctcatgatacattcataaatcaaaac 27708073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 42887959 - 42887911
Alignment:
Q  401 atataaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    ||||||||||||||||||| || |||||| |||| ||||||||||||||    
T  42887959 atataaaattaaatataacactcaaatcttatgaaacattcataaatca 42887911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 42887959 - 42887911
Alignment:
Q  44 atataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||||||||||||||| ||| |||||||| |||||| ||||||||||||    
T  42887959 atataaaattaaatataacactcaaatcttatgaaacattcataaatca 42887911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 5124584 - 5124538
Alignment:
Q  10 ataatactataagttataaacaaacatatatctaatataaaattaaa 56  Q
    ||||||||||||  ||||||||||||||||| || ||||||||||||    
T  5124584 ataatactataaagtataaacaaacatatatttagtataaaattaaa 5124538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 5326644 - 5326583
Alignment:
Q  28 aacaaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaa 89  Q
    ||||||| | ||| |||||||||||||||||| ||| |||||| |||| ||||||| |||||    
T  5326644 aacaaacttctatataatataaaattaaatataacactcaaatttcataaaatattaataaa 5326583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 22575844 - 22575889
Alignment:
Q  404 taaaattaaatataacgcttaaatctcatgagacattcataaatca 449  Q
    ||||||||||||||||  | ||||||||||| ||||||||||||||    
T  22575844 taaaattaaatataacattcaaatctcatgaaacattcataaatca 22575889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 22576131 - 22576188
Alignment:
Q  411 aaatataacgcttaaatctcatgagacattcataaatcaaaacg-caaaagtcaaaag 467  Q
    ||||||||| || || |||||||| ||||||||||||||||||| ||||| |||||||    
T  22576131 aaatataacactcaactctcatgatacattcataaatcaaaacgccaaaaatcaaaag 22576188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 25029620 - 25029571
Alignment:
Q  43 aatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||||||||| ||||| ||| ||||||||||||| | ||||||||||||    
T  25029620 aatataaaattgaatataacactcaaatctcatgagacattcataaatca 25029571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 28855422 - 28855361
Alignment:
Q  31 aaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||| ||||| |||||||||||| ||||| ||| |||||| ||||||||  |||||||||||    
T  28855422 aaacttatatttaatataaaatttaatataacactcaaatatcatgaaaccttcataaatca 28855361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 27708021 - 27708069
Alignment:
Q  44 atataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||||||||||||| | ||| ||||||||||||| | ||||||||||||    
T  27708021 atataaaattaaatttaacactcaaatctcatgatacattcataaatca 27708069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 453
Target Start/End: Original strand, 6014 - 6194
Alignment:
Q  276 tagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatt 375  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||||| | ||||||||||  ||||| ||| |||||||||||||||||||||||    
T  6014 tagcgtatagcggtatgacaaatagcggtcaccaatatttgattattttttggaaaaattacatgaataatgctatgaagtataaacaaacttacatatt 6113  T
Q  376 tctnnnnnnncaaaacttatatttaatat---aaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    |||        ||||||||||||||||||   ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  6114 tctcaacaaaaaaaacttatatttaatataaaaaaattaaatataacactcaaatctcatgagacattcataaatcaaaac 6194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 6146 - 6190
Alignment:
Q  48 aaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||||||||||| ||| ||||||||||||| | ||||||||||||    
T  6146 aaaattaaatataacactcaaatctcatgagacattcataaatca 6190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 242 - 453
Target Start/End: Original strand, 30668 - 30880
Alignment:
Q  242 cgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgg 341  Q
    |||||| |||| || ||||| |||||||| ||| ||| ||||||  |||||||||| | |||||||||||||||||| |||||||| |||||||| |||     
T  30668 cgtagcagccgaccccaaaactgggatagcgggatagggtatagcagtatgacaaacagcggtcaccgatatttgatcattttttggacaaattatatga 30767  T
Q  342 gtaatggtataaagtataaacaaacttacatatttctnnnnnnnca-aaacttatatttaatataaaattaaatataacgcttaaatctcatgagacatt 440  Q
     ||||   |||||| ||||||||||||| ||||||||        | |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  30768 ataattccataaagcataaacaaacttatatatttctcaacaaaaataaacttatatttaatataaaattaaatataacactcaaatctcatgagacatt 30867  T
Q  441 cataaatcaaaac 453  Q
    |||||||||||||    
T  30868 cataaatcaaaac 30880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 30815 - 30876
Alignment:
Q  31 aaacatatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  30815 aaacttatatttaatataaaattaaatataacactcaaatctcatgagacattcataaatca 30876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 288 - 453
Target Start/End: Original strand, 31462427 - 31462593
Alignment:
Q  288 gtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaacttacatatttctnnnnnnnca 387  Q
    ||||||||||||  |||||||||||||||||||||||||  ||||| ||||||  ||||  ||||| ||||||||||||||| ||||||||        |    
T  31462427 gtatgacaaatagtggtcaccgatatttgattatttttttgacaaactacatgaataatactataaggtataaacaaacttatatatttctcaacaacaa 31462526  T
Q  388 aaactt-atatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||| || |||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  31462527 aaaatttatatttaatataaaattaaatataacactcaaatctcacgagacattcataaatcaaaac 31462593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 215 - 453
Target Start/End: Original strand, 2252008 - 2252243
Alignment:
Q  215 cataatagtcaatctcggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgatatt 314  Q
    |||||||||||||||||||||||  ||||||||||| | || ||||||||||||||        ||||||| ||||| ||||||   |||||||||||||    
T  2252008 cataatagtcaatctcggatagcggtgcgtagcggctgaccccaaaagtgggatag--------cgtatagcggtattacaaatggtggtcaccgatatt 2252099  T
Q  315 tgattattttttgaacaaattacatgggtaatggtataaagtataa--------acaaacttacatatttctnnnnnnncaaaacttatatttaatataa 406  Q
    ||||||||| ||||||||||||||||  | |||||||||| |||||        ||||||||| ||||||||        ||||  |||||||||| |||    
T  2252100 tgattatttattgaacaaattacatgaatgatggtataaactataaagtattagacaaacttatatatttctaagaa---aaaaactatatttaatgtaa 2252196  T
Q  407 aattaaatataacgcttaaatctcatgagacattcataaatcaaaac 453  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||||    
T  2252197 aattaaatataacactcaaatctcatgagacattcataaaacaaaac 2252243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 8152549 - 8152498
Alignment:
Q  288 gtatgacaaataacggtcaccgatatttgattattttttgaacaaattacat 339  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||||||||    
T  8152549 gtatgacaaatagcggtcactgatatttgattatttttttaacaaattacat 8152498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 31462533 - 31462589
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaatca 92  Q
    ||||| |||||||||||||||||| ||| |||||||||| || | ||||||||||||    
T  31462533 tatatttaatataaaattaaatataacactcaaatctcacgagacattcataaatca 31462589  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 2252183 - 2252236
Alignment:
Q  36 tatatctaatataaaattaaatatgacattcaaatctcatgaaatattcataaa 89  Q
    ||||| |||| ||||||||||||| ||| ||||||||||||| | |||||||||    
T  2252183 tatatttaatgtaaaattaaatataacactcaaatctcatgagacattcataaa 2252236  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 15584593 - 15584677
Alignment:
Q  281 tatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaa 365  Q
    ||||| ||||||||||||| | ||||| ||||||| ||||  ||||| | ||||||||||  ||||   ||||||||||||||||    
T  15584593 tatagcggtatgacaaatagcagtcactgatatttaattagattttggaaaaattacatgaataataccataaagtataaacaaa 15584677  T

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Target: scaffold0380 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 450
Target Start/End: Original strand, 10455 - 10638
Alignment:
Q  269 agtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagtataaacaaactt 368  Q
    |||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||   ||||  |||||||||||||||||| |    
T  10455 agtgggatagcgtatagcggtatgacatatagcggtcaccgatatttgattattttttggacaaataacatcaataatactataaagtataaacaaacct 10554  T
Q  369 acatatttctnnnnnnncaaaa--cttatatttaatataaaattaaatataacgcttaaatctcatgagacattcataaatcaa 450  Q
    | ||||||||        ||||  |||  | ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  10555 atatatttctcaacaaaaaaaaacctttcaattattataaaattaaatataacgctaaaatctcatgaaacattcataaatcaa 10638  T

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Target: scaffold0252 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 16589 - 16699
Alignment:
Q  269 agtgggttagcgtatagtggtatgacaaataacggtcaccgatatttgattattttttgaacaaattacatgggtaatggtataaagta-taaacaaact 367  Q
    |||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||  ||||  |||||||||  |||||||||    
T  16589 agtgggatagcgtatagaggtatgacaaatagcggtcactgatatttgattattttttggacaaattacatgaataatactataaagtacaaaacaaact 16688  T
Q  368 tacatatttct 378  Q
     | ||||||||    
T  16689 gatatatttct 16699  T

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Target: scaffold0252; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 452
Target Start/End: Original strand, 16748 - 16790
Alignment:
Q  410 taaatataacgcttaaatctcatgagacattcataaatcaaaa 452  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  16748 taaatataactctaaaatctcatgagacattcataaatcaaaa 16790  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 101776 - 101695
Alignment:
Q  230 cggatagcaatgcgtagcggccggcctcaaaagtgggatagtgggttagcgtatagtggtatgacaaataacggtcaccgat 311  Q
    ||||||||  || |||||||| | || ||||| |||||||| ||| |||||||||  |||||||||| || |||||||||||    
T  101776 cggatagcggtgtgtagcggcagaccccaaaaatgggatagcgggatagcgtatatcggtatgacaattagcggtcaccgat 101695  T

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