View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20771_low_2 (Length: 250)
Name: NF20771_low_2
Description: NF20771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20771_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7231192 - 7230950
Alignment:
| Q |
1 |
tgtcattttgaggtttggagacaaaatcaattttagttcaataaaatcatgtttataagaagcaaaactttccataagttaggccttaccagttagtggc |
100 |
Q |
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| T |
7231192 |
tgtcattttgaggtttggagacaaaatcaattttagttcaataaaaccatgtttataagaagcaaaactttccataagttaggccttaccagttagtggc |
7231093 |
T |
|
| Q |
101 |
caagaactctttagaaaaatgaaaaacaccccttgaagaattttctggaaaccaccaaaggaagtaaaacaaaagaaaatgtcttcaaaatcatcttat- |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7231092 |
caagaactctttagaaaaatgaaaaacaccccttgaagaattttctggaaaccaccaaaggaagtaaaacaaaagaaactgtcttcaaaatcatcttata |
7230993 |
T |
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| Q |
200 |
------ttatgtcgacgctcattcctattattataagatcccc |
236 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
7230992 |
tttatattatgtcgacgctcattcctattattataaggtcccc |
7230950 |
T |
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