View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20772_low_1 (Length: 459)
Name: NF20772_low_1
Description: NF20772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20772_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 112 - 396
Target Start/End: Original strand, 8525319 - 8525592
Alignment:
| Q |
112 |
ccacaccattatgaataaatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaactaagtgtggatgatattttaaggaa |
211 |
Q |
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| T |
8525319 |
ccacaccattatgaatatatgattttgtggaaagtgttaccaaatggtttatgtgaatgaa-----------aactaagtgtggatgatattttaaggaa |
8525407 |
T |
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| Q |
212 |
cacaacgtctatatttatatccaaattggaaatacaatattgtcaaaaacaatatttagtgattgttttt-cttggtggaccaacacatcacaacataaa |
310 |
Q |
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| T |
8525408 |
cacaacgtctatatttatatccaaattgaaaatacaatattttcaaaaacaatatttagtgattgtttttccttggtggaccaacacatcgcaacataaa |
8525507 |
T |
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| Q |
311 |
taattgttaatatttctattggaatctatggctggagaatgtcgatccacaattgaaatatatgtgtagagtcatcttaagatttt |
396 |
Q |
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| T |
8525508 |
taattgttaatatttctattggaatctatggctcgagaatgtcgatgcacaattgaaatatat-tgtagagtcatcttaagatttt |
8525592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 8525220 - 8525249
Alignment:
| Q |
13 |
atgaagcaaagcagagctctcataatgatg |
42 |
Q |
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| T |
8525220 |
atgaagcaaagcagagctctcataatgatg |
8525249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 25520752 - 25520646
Alignment:
| Q |
133 |
attttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaactaagtgtggatgatattttaaggaacacaacgtctatatttatatc |
232 |
Q |
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| T |
25520752 |
attttttggaaagtgttactaaatggtttatgtgaatgaaaaacaatagaaaagtaagtgtggatgaaatgccaagggacacaacgtaaatatttatagc |
25520653 |
T |
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| Q |
233 |
caaattg |
239 |
Q |
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| T |
25520652 |
caaattg |
25520646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 12251659 - 12251710
Alignment:
| Q |
310 |
ataattgttaatatttctattggaatctatggctggagaatgtcgatccaca |
361 |
Q |
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| T |
12251659 |
ataattgttactatttctatttgaatctatggatggagaatgtctatccaca |
12251710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 42125748 - 42125780
Alignment:
| Q |
14 |
tgaagcaaagcagagctctcataatgatgacat |
46 |
Q |
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| T |
42125748 |
tgaagcaaagcagagctctcatcatgatgacat |
42125780 |
T |
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