View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20772_low_2 (Length: 417)

Name: NF20772_low_2
Description: NF20772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20772_low_2
NF20772_low_2
[»] chr2 (5 HSPs)
chr2 (10-398)||(24454339-24454730)
chr2 (47-221)||(23348923-23349100)
chr2 (20-150)||(1615831-1615963)
chr2 (47-136)||(12741775-12741866)
chr2 (47-221)||(18355256-18355433)
[»] chr8 (6 HSPs)
chr8 (16-226)||(27541471-27541683)
chr8 (72-205)||(5662583-5662719)
chr8 (47-221)||(5657772-5657949)
chr8 (47-221)||(14677964-14678141)
chr8 (47-221)||(31100815-31100992)
chr8 (187-221)||(24788119-24788153)
[»] chr5 (5 HSPs)
chr5 (47-221)||(7473432-7473609)
chr5 (49-221)||(22009473-22009648)
chr5 (47-221)||(30442490-30442667)
chr5 (48-221)||(9043803-9043979)
chr5 (86-216)||(22004441-22004571)
[»] chr7 (4 HSPs)
chr7 (47-221)||(1262089-1262266)
chr7 (47-221)||(26909924-26910101)
chr7 (47-221)||(43071325-43071502)
chr7 (47-134)||(48849750-48849839)
[»] chr3 (10 HSPs)
chr3 (47-221)||(31685078-31685255)
chr3 (47-221)||(37982350-37982527)
chr3 (47-221)||(53973229-53973406)
chr3 (47-215)||(19882054-19882225)
chr3 (86-221)||(24761882-24762018)
chr3 (99-215)||(47763912-47764028)
chr3 (83-221)||(17681768-17681906)
chr3 (84-221)||(2549938-2550075)
chr3 (190-223)||(29861913-29861946)
chr3 (86-138)||(53027736-53027788)
[»] scaffold0035 (1 HSPs)
scaffold0035 (47-221)||(35064-35241)
[»] chr4 (2 HSPs)
chr4 (47-221)||(29863304-29863481)
chr4 (190-219)||(10195656-10195685)
[»] scaffold0596 (1 HSPs)
scaffold0596 (47-136)||(741-832)
[»] chr6 (4 HSPs)
chr6 (47-136)||(33045374-33045465)
chr6 (118-221)||(3065699-3065802)
chr6 (84-138)||(8976489-8976543)
chr6 (46-86)||(10092637-10092677)
[»] scaffold0096 (1 HSPs)
scaffold0096 (86-221)||(27411-27546)
[»] scaffold0045 (1 HSPs)
scaffold0045 (47-221)||(11577-11754)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 398
Target Start/End: Complemental strand, 24454730 - 24454339
Alignment:
Q  10 catcatcacattacactataagttatatggaaattcggtgcataggaaaaagacatcaaatttgaaagtttgaa---agattagatcaaagaatgagatg 106  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||    
T  24454730 catcatcacattacactataagctatatgggaattcggtgcataggaaaaagacatcaaatttgaaagtttgaagtcagattagatcaaaggatgagatg 24454631  T
Q  107 aatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggat 206  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |||    
T  24454630 aatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaaatttaggtttaggatttgcaatggtcttagcaatgttaattaagat 24454531  T
Q  207 tagatataagtatgaagattgatgatagagacggaattatacaannnnnnnnatttatcagcataggtaaatttatatattgttaatggatatgagtgca 306  Q
    |||||||||||||||||  ||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24454530 tagatataagtatgaagtatgatgatagaggcggaattatacaattttttttatttatcagcataggtaaatttatatattgttaatggatatgagtgca 24454431  T
Q  307 agaagcactacactnnnnnnntggaaacagcgcaagctctactaaacccattaagttggaagaccaaaaatagaaaaagttgagttgcctac 398  Q
    ||||||||||||||       |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24454430 agaagcactacactaagaaaatggaaacagtacaagctctactaaacccattaagttggaagaccaaaaatagaaaaagttgagttgcctac 24454339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 23348923 - 23349100
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | ||||||||||||||| |||||   |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||    
T  23348923 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctccctt 23349022  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||||    |||||||||||||  | ||||||||||||||||||    
T  23349023 gttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatga 23349100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 1615831 - 1615963
Alignment:
Q  20 ttacactataagttatatggaaattcggtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagct 117  Q
    |||||||||||| ||||| | |||| |||| |||||||| | |||||||||||||||||||||   | |||||||||||| |||||||| |||   |||     
T  1615831 ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaaggatgagatgcatgcttagcc 1615930  T
Q  118 aaatgatgagatccaacggtcctccttgtttgg 150  Q
    |||||||| ||||||||| ||  ||||||||||    
T  1615931 aaatgatgcgatccaacgatctcccttgtttgg 1615963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 12741866 - 12741775
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacgg 136  Q
    |||||||||||| | ||||||||||||||| |||||   |||||||||||||| |||||||| |||   ||| |||||||||||||||||||    
T  12741866 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 12741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 18355256 - 18355433
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | ||||||||||||||| |||||   ||||||||| |||| |||||||| |||   ||| ||||||||||||||||||  |  ||||    
T  18355256 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacgacctccctt 18355355  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||||    |||||||||||||  | ||||| ||||||||||||    
T  18355356 gttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattaaatataagtatga 18355433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 27541471 - 27541683
Alignment:
Q  16 cacattacactataagttatatggaaattcggtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtca 113  Q
    |||||||||||||||| ||||||| |||| ||||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||       
T  27541471 cacattacactataagctatatgggaatttggtgcataggaaatatacatcaaatttgaaagtttgattcagattagatcaaaggatgagatgcatgctt 27541570  T
Q  114 agctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatat 213  Q
    ||| |||||||||||||||||||    |||||||||| ||| ||   ||| ||||||| | ||||||| |   |||||||||||||  | ||||||||||    
T  27541571 agccaaatgatgagatccaacggcgtcccttgtttggagccaaagccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatat 27541670  T
Q  214 aagtatgaagatt 226  Q
    |||||||| ||||    
T  27541671 aagtatgatgatt 27541683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 5662719 - 5662583
Alignment:
Q  72 tgaaagtttgaa---agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggt 168  Q
    ||||||||||||   |||||| ||||||| |||||||||||| | ||| ||||||||||||| ||||| |||||||| |||| |||||||||||  ||||    
T  5662719 tgaaagtttgaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggt 5662620  T
Q  169 ttaagatttgcaatggtcttagcaatgttaattagga 205  Q
    ||| | ||||||| |   |||||||| ||||||||||    
T  5662619 ttagggtttgcaaagtcattagcaatattaattagga 5662583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 5657949 - 5657772
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   | | ||||||||||||||||||| |  ||||    
T  5657949 gtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctccctt 5657850  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||| |   ||||||| |||||  | ||||||||||||||||||    
T  5657849 gttttggagccaaaactatttaggtttagggtttgcaaagtcattagcaacgttaacaaagattagatataagtatga 5657772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 14677964 - 14678141
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | |||| ||||||||||||||||   |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||    
T  14677964 gtgcataggaaatatacattaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctccctt 14678063  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||| ||| |   |||||||||||||  | ||||||||||||||||||    
T  14678064 gttttggagccaaaaccatttaggtttagggttttcaaagtcattagcaatgttaacaaagattagatataagtatga 14678141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 31100815 - 31100992
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||  |||   | | ||||||||||||| ||||| |  ||||    
T  31100815 gtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctccctt 31100914  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| ||||||||| |   |||||||||||||  | ||||||||||||||||||    
T  31100915 gttttggagccaaaaccatttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatga 31100992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 24788119 - 24788153
Alignment:
Q  187 ttagcaatgttaattaggattagatataagtatga 221  Q
    |||||||||||||||| ||||||||||||||||||    
T  24788119 ttagcaatgttaattaagattagatataagtatga 24788153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 7473432 - 7473609
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | ||||||||||||||| |||||   |||||||||||||| |||||||| |||   ||||||||||||||||||||||| |  ||||    
T  7473432 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctccctt 7473531  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||||    |||||||||||||  | ||||||||||||||||||    
T  7473532 gttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatga 7473609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 22009473 - 22009648
Alignment:
Q  49 gcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg- 145  Q
    |||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  |||||     
T  22009473 gcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgt 22009572  T
Q  146 tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    ||||| ||| |||  ||| ||||||| | |||||||     |||||||||||||  | ||||||||||||||||||    
T  22009573 tttggagccaaaaccatttaggtttagggtttgcaaattcattagcaatgttaacaaagattagatataagtatga 22009648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 30442490 - 30442667
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | ||||||||||||||| |||||   |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||    
T  30442490 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctccctt 30442589  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||||    |||||||||||||  | ||||||||||||| ||||    
T  30442590 gttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagcatga 30442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 9043979 - 9043803
Alignment:
Q  48 tgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg 145  Q
    ||||||||||| | ||||||||||| ||| |||||   |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  |||||    
T  9043979 tgcataggaaatatacatcaaatttaaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttg 9043880  T
Q  146 -tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
     ||||| ||| |||  ||| ||||||| | ||||||||    |||||||||||||  | ||||||||||||||||||    
T  9043879 ttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatga 9043803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 22004441 - 22004571
Alignment:
Q  86 attagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggt 185  Q
    |||||||||||| |||| |||||||   ||| ||||||||||||||||||| || ||||| |||| |||||||  ||  ||||||| | |||||||        
T  22004441 attagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgattggcgcctaaactatctaggtttagggtttgcaaaatc 22004540  T
Q  186 cttagcaatgttaattaggattagatataag 216  Q
     |||||||||||||  | |||||||||||||    
T  22004541 attagcaatgttaacaaagattagatataag 22004571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 1262266 - 1262089
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   ||| |||||||||||||||||||    ||||    
T  1262266 gtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcttccctt 1262167  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||| |   |||||||||||||  | ||||||||||||||||||    
T  1262166 gttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatga 1262089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 26909924 - 26910101
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   ||| ||||||| |||||||| ||||  ||||    
T  26909924 gtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgataagatccaatggtctccctt 26910023  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| ||   ||| ||||||| | ||||||| | | |||||||||||||  | ||||||||||||||||||    
T  26910024 gttttggagccaaatccatttaggtttagggtttgcaaagttattagcaatgttaacaaagattagatataagtatga 26910101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 43071325 - 43071502
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | ||||||||||||||| |||||   |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||    
T  43071325 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctccctt 43071424  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||||    |||||||||||||  | ||||||||||||||||||    
T  43071425 gttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatga 43071502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 48849750 - 48849839
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaac 134  Q
    |||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   ||| |||||||||||||||||    
T  48849750 gtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac 48849839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 31685255 - 31685078
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   ||| |||||||||||| |||||| |  ||||    
T  31685255 gtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagattcaacggcctccctt 31685156  T
Q  145 -gtttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
      ||||| ||| |||  ||| ||||||| | ||||||| |   |||||||||||||| | ||||||||||||||||||    
T  31685155 attttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaagattagatataagtatga 31685078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 37982527 - 37982350
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | ||||||||||||||| |||||   ||||||||| |||| |||||||| |||   ||| |||||||||||||||||||||  ||||    
T  37982527 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctccctt 37982428  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||||    |||||||||||||  | ||||||||||||||||||    
T  37982427 gttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatga 37982350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 53973229 - 53973406
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | ||||||||||||||| |||||   |||||||||||||| |||||||| | |   ||| ||||||||||||||||||| |  ||||    
T  53973229 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctccctt 53973328  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||||    |||||||||||||  | ||||||||||||||||||    
T  53973329 gatttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatga 53973406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 19882054 - 19882225
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | ||||||||||||||| |||||   |||||||||||||| |||||||| |||   ||| |||||||||||||||||||||  ||||    
T  19882054 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctccctt 19882153  T
Q  145 gttt-ggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataa 215  Q
    |||| || ||| |||  ||| ||||||| | ||| ||||    |||||||||||||  | ||||||||||||    
T  19882154 gttttggagccaaaaccatttaggtttagggtttacaatttcattagcaatgttaacaaagattagatataa 19882225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 24761882 - 24762018
Alignment:
Q  86 attagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaatgg 184  Q
    |||||||||||| |||||||| |||   ||| |||||||||||||||||||||  | ||| ||||| ||| |||  ||| ||||||| | ||||||| |     
T  24761882 attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttagggtttgcaaagt 24761981  T
Q  185 tcttagcaatgttaattaggattagatataagtatga 221  Q
      |||||||||||||  ||||||||||||||||||||    
T  24761982 cattagcaatgttaagaaggattagatataagtatga 24762018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 47763912 - 47764028
Alignment:
Q  99 atgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgtta 198  Q
    |||||||||||| | ||| | |||||  |||||||||| |||||||| |||| ||||||||| |  || |||| | ||||||| | | ||||||||||||    
T  47763912 atgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgtta 47764011  T
Q  199 attaggattagatataa 215  Q
    | |||||||||||||||    
T  47764012 agtaggattagatataa 47764028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 17681906 - 17681768
Alignment:
Q  83 aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaat 182  Q
    ||||||||||||||| |||||||| |||   | | ||||||||||||||||||| || |||||||||| ||| |||  ||| ||||||| | |||||||     
T  17681906 aagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaa 17681807  T
Q  183 ggtcttagcaatgttaattaggattagatataagtatga 221  Q
        ||| |||||||||  | ||||||||||||||||||    
T  17681806 atcattaacaatgttaacaaagattagatataagtatga 17681768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 2550075 - 2549938
Alignment:
Q  84 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgttt-ggtgcctaaaaaattcaggtttaagatttgcaat 182  Q
    |||||| ||||||| |||||||| |||   ||| ||||||| ||||||||||| |  |||||||| || ||| |||  ||| ||||||| | |||||||     
T  2550075 agattaaatcaaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgcaaa 2549977  T
Q  183 ggtcttagcaatgttaattaggattagatataagtatga 221  Q
    |   |||||||||||||||| ||||||||||||||||||    
T  2549976 gtcattagcaatgttaattaagattagatataagtatga 2549938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 29861913 - 29861946
Alignment:
Q  190 gcaatgttaattaggattagatataagtatgaag 223  Q
    ||||||||||||||||||||| ||||||||||||    
T  29861913 gcaatgttaattaggattagaaataagtatgaag 29861946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 53027736 - 53027788
Alignment:
Q  86 attagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtc 138  Q
    |||||||||||| |||||||| |||   ||| |||||||||||||||||||||    
T  53027736 attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtc 53027788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 35241 - 35064
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   ||| |||||||||||||||||   |  ||||    
T  35241 gtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaacctccctt 35142  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||| |   |||||||||||||  | ||||||||||||||||||    
T  35141 gttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatga 35064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 29863304 - 29863481
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    ||||||| |||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||    
T  29863304 gtgcataagaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacggcctccctt 29863403  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| ||| |||  ||| ||||||| | ||||||| |   | |||||||||||  | ||||||||||||||||||    
T  29863404 gttttggagccaaaaccatttaggtttacggtttgcaaagtcatgagcaatgttaacaaagattagatataagtatga 29863481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 219
Target Start/End: Complemental strand, 10195685 - 10195656
Alignment:
Q  190 gcaatgttaattaggattagatataagtat 219  Q
    ||||||||||||||||||||||||||||||    
T  10195685 gcaatgttaattaggattagatataagtat 10195656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 832 - 741
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttgaa--agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacgg 136  Q
    |||||||||||| | ||||||||||||||| |||||   |||||||||||||| |||||||| |||   ||| |||||||||||||||||||    
T  832 gtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 33045374 - 33045465
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacgg 136  Q
    |||||||||||| | |||||||||||||||||||||   |||||||||||||| |||||||| |||   | | |||||||||||||||||||    
T  33045374 gtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg 33045465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 3065802 - 3065699
Alignment:
Q  118 aaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagt 217  Q
    |||||||||||||||||||||  |||||||||| ||| |||  ||| ||||||| | ||||||| |   ||||| |||||||  | ||||||||||||||    
T  3065802 aaatgatgagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattagatataagt 3065703  T
Q  218 atga 221  Q
    ||||    
T  3065702 atga 3065699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 8976543 - 8976489
Alignment:
Q  84 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtc 138  Q
    |||||||||||||| |||||||| ||||  |||||||| ||||||||||||||||    
T  8976543 agattagatcaaaggatgagatgcatgtttagctaaataatgagatccaacggtc 8976489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 10092677 - 10092637
Alignment:
Q  46 ggtgcataggaaaaagacatcaaatttgaaagtttgaaaga 86  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  10092677 ggtgcataggaaatatacatcaaatttgaaagtttgaaaga 10092637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 27546 - 27411
Alignment:
Q  86 attagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggt 185  Q
    |||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  |||||||||| ||| |||  ||| ||||||| | |||||||        
T  27546 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatc 27447  T
Q  186 cttagcaatgttaattaggattagatataagtatga 221  Q
     |||||||||||||  | ||||||||||||||||||    
T  27446 attagcaatgttaacaaagattagatataagtatga 27411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 11577 - 11754
Alignment:
Q  47 gtgcataggaaaaagacatcaaatttgaaagtttga--aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctcctt 144  Q
    |||||||||||| | |||||||||||||||||||||   |||||| ||||||| |||||||| |||   | | ||||||||||||||||||| |  ||||    
T  11577 gtgcataggaaatatacatcaaatttgaaagtttgactcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctccctt 11676  T
Q  145 g-tttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatga 221  Q
    | ||||| | | |||  | | ||||||| | ||||||| |   |||||||||||||  | ||||||||||||||||||    
T  11677 gttttggagtcaaaaccagttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatga 11754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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