View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20772_low_3 (Length: 352)
Name: NF20772_low_3
Description: NF20772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20772_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 44552893 - 44553052
Alignment:
| Q |
1 |
ctcctcgacaactcctgcactatctatgacccaccaacaaactcatttttgtttatattcttttgggccctttttgcagctgctccttttcactagctac |
100 |
Q |
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| T |
44552893 |
ctcctcgacaactcctgcactatctatgacccaccaacaaactcatttttgtttatattcttttgggccctttttgcagctgctccttttcactagctac |
44552992 |
T |
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| Q |
101 |
tactatactcaagctgatgcacccactgcaggcttgtttgccactacttcaaagttacca |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44552993 |
tactatactcaagctgatgcacccactgcaggcttgtttgccactacttcaaagttacca |
44553052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 232 - 335
Target Start/End: Original strand, 44553124 - 44553227
Alignment:
| Q |
232 |
ctgtccacggttctgctccatgttatcttctccctgctgaggtggccgccattgctgctccggctgaaccatcaacggtgccaccatgttctccggttgc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44553124 |
ctgtccacggttctgctccatgttatcttctccctgctgaggtggccgccattgctgctccggctgaaccatcaacggtgccgccatgttctccggttgc |
44553223 |
T |
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| Q |
332 |
acca |
335 |
Q |
| |
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|||| |
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| T |
44553224 |
acca |
44553227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 12683518 - 12683483
Alignment:
| Q |
279 |
gccattgctgctccggctgaaccatcaacggtgcca |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
12683518 |
gccactgctgctccggctgaaccatcaacggtgcca |
12683483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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