View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20772_low_4 (Length: 340)
Name: NF20772_low_4
Description: NF20772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20772_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 32 - 330
Target Start/End: Complemental strand, 41479715 - 41479415
Alignment:
| Q |
32 |
atcttaagtagttcaatacgaatttctcctataagcgacgaagggctcgtgagggaacagtttccttctca--gagaatggtagttgccacactaatgtc |
129 |
Q |
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| T |
41479715 |
atcttaagtagttcaatacgaatttctcctataagcgacgaagggctcgcgagggaacagtttccttctcaaagagaatggtagtcgccacactaatgtc |
41479616 |
T |
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| Q |
130 |
tgaagatctttcttgaagctaatttttaaaaatacagttcaaactaatgatttcttattgtttggaaataatgtaatgatggataatataatgatttatt |
229 |
Q |
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| T |
41479615 |
tgaagatctttcttgaagctaatttttaaaaatacagttcaaactaatgatttcttattgtttggaaataatgtaatgatggataatataatgatttatt |
41479516 |
T |
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| Q |
230 |
tctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactacaaagagagacaattgataccacatgccttt |
329 |
Q |
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| T |
41479515 |
tctatggccaggtatgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccaaactacaaagagagacaattgataccacatgccttt |
41479416 |
T |
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| Q |
330 |
g |
330 |
Q |
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| T |
41479415 |
g |
41479415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 41487528 - 41487445
Alignment:
| Q |
238 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactacaaagagagacaattgataccac |
321 |
Q |
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| T |
41487528 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacaggagacgattgataccac |
41487445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 321
Target Start/End: Complemental strand, 41486677 - 41486578
Alignment:
| Q |
215 |
atataatgatttatttctatggccaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccatactac-aaagagagacaatt |
313 |
Q |
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| T |
41486677 |
atataatgctttatttttaggttcaggtacgatttcaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaatt |
41486586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 40753830 - 40753788
Alignment:
| Q |
251 |
aaatgaatttaacttaaatgtttcaagacaaaaatttaaacca |
293 |
Q |
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| T |
40753830 |
aaatgaatttaacttaaatgtttcgagacaaaaatttaaacca |
40753788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 41472428 - 41472357
Alignment:
| Q |
32 |
atcttaagtagttcaatacgaatttctcctataa-gcgacgaagggctcgtgagggaacagtttccttctca |
102 |
Q |
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| T |
41472428 |
atctaaagtagtacactacgaatttctcctataatgtgacgaaggtctggcgagggaacaatttccttctca |
41472357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 16406983 - 16407054
Alignment:
| Q |
32 |
atcttaagtagttcaatacgaatttctcctat-aagcgacgaagggctcgtgagggaacagtttccttctca |
102 |
Q |
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|||| |||||||||| |||||||||||||||| | | |||||||| || ||||||||||| ||||||||||| |
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| T |
16406983 |
atctaaagtagttcactacgaatttctcctatgatgtgacgaaggtctggtgagggaacaatttccttctca |
16407054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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