View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20772_low_5 (Length: 326)
Name: NF20772_low_5
Description: NF20772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20772_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 49351455 - 49351753
Alignment:
| Q |
22 |
ctgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagctacgtgaatggctgaaacagattaagcgtgtcttcta |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
49351455 |
ctgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagctacgtgaatggttgaaacagattaagcgcgtcttcta |
49351554 |
T |
|
| Q |
122 |
cgatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351555 |
cgatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttc |
49351654 |
T |
|
| Q |
222 |
tcaaattctaatcctcttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagttt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351655 |
tcaaattctaatcctcttgtttatcgctttcaaatggcacaccaaatcaaacatatcaaagagagatttgataaggttgctgctgataggcttaagttt |
49351753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 23 - 320
Target Start/End: Original strand, 49340092 - 49340389
Alignment:
| Q |
23 |
tgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagctacgtgaatggctgaaacagattaagcgtgtcttctac |
122 |
Q |
| |
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||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
49340092 |
tgtctcactcgtcaaagccgtgttattagatgctgaacaaaagcaatggcagaacaatgagctacgtgaatggctgaaacagattaaccgtgttttctac |
49340191 |
T |
|
| Q |
123 |
gatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttct |
222 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49340192 |
gatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttctggtagcatcagaaggaaggtaaaatgtttcttct |
49340291 |
T |
|
| Q |
223 |
caaattctaatcctcttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagttt |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
49340292 |
caaattctaatcctcttgtttatcgctttcaaatggcacatcaaatcaaacatatcaaagaaagatttgataagtttgctgctgataggcttaagttt |
49340389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 22 - 320
Target Start/End: Complemental strand, 32784820 - 32784522
Alignment:
| Q |
22 |
ctgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagctacgtgaatggctgaaacagattaagcgtgtcttcta |
121 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||| |
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| T |
32784820 |
ctgtctcactcatcaaagccgtgttgttggacgctgaacaaacgcaatggcagaaccatgagctgcgtgaatggttgaaacagattaagcgggtcttcta |
32784721 |
T |
|
| Q |
122 |
cgatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttc |
221 |
Q |
| |
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|||||||||||||| || |||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32784720 |
tgatgccgaagatgtaatcgatgattttgagtgcgaggccttgcgaaagcacatcatcaacacttcaggtagcatcagaaggaaggtaaaacgtttcttc |
32784621 |
T |
|
| Q |
222 |
tcaaattctaatcctcttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagttt |
320 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32784620 |
tcaaattctaatcctcttgtttaccgccttaaaatggtgcatcaaatcaaacatatcaaagagagatttgataaggttgctgctgataggcttaagttt |
32784522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 320
Target Start/End: Complemental strand, 13441648 - 13441350
Alignment:
| Q |
22 |
ctgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagctacgtgaatggctgaaacagattaagcgtgtcttcta |
121 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |
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| T |
13441648 |
ctgtctcactcgtcaaagcagtgttgttggacgctgaacaaaggcaatggcagaacaatgaactaggtgaatggctgaaacagattaagcgggtcttcta |
13441549 |
T |
|
| Q |
122 |
cgatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttc |
221 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13441548 |
cgatgccgaagatgtaatcgatgattttgaatgtgaagccttacaaaagcaaatcatcaacacttcaggtagcatcagaaggaaagtaaaatgtttcttc |
13441449 |
T |
|
| Q |
222 |
tcaaattctaatcctcttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgataggcttaagttt |
320 |
Q |
| |
|
|| ||||||||||||||||||||||| || |||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
13441448 |
tcggattctaatcctcttgtttatcgccttaaaatggcacatcaaattaaacatatcaaagaaagatttgataaggttgctgctgatagacataagttt |
13441350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 81 - 274
Target Start/End: Complemental strand, 29603379 - 29603186
Alignment:
| Q |
81 |
gagctacgtgaatggctgaaacagattaagcgtgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatca |
180 |
Q |
| |
|
||||| |||||||||||| ||||||| || ||||||||||||||||| |||||||| || ||||||| || || ||||| |||||||||||||| ||| |
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| T |
29603379 |
gagcttcgtgaatggctgcaacagatcaaacgtgtcttctacgatgcagaagatgtaatcaatgattttgagtgcgaggcattgcgaaagcacgtagtca |
29603280 |
T |
|
| Q |
181 |
acacttcaggtagcatcagaaggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatggcacaccaaatcaaaca |
274 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||| ||| || | |||||||||||||||||||||| || |||||||||| ||||||||||| |
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| T |
29603279 |
acacttctggtagcatcagaaggaaggtacgacgttacttatccagttctaatcctcttgtttatcgccttaaaatggcacatcaaatcaaaca |
29603186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 81 - 274
Target Start/End: Original strand, 29749915 - 29750108
Alignment:
| Q |
81 |
gagctacgtgaatggctgaaacagattaagcgtgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatca |
180 |
Q |
| |
|
||||| |||||||||||| ||||||| || ||||||||||||||||| |||||||| || ||||||| || || ||||| |||||||||||||| ||| |
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| T |
29749915 |
gagcttcgtgaatggctgcaacagatcaaacgtgtcttctacgatgcagaagatgtaatcaatgattttgagtgcgaggcattgcgaaagcacgtagtca |
29750014 |
T |
|
| Q |
181 |
acacttcaggtagcatcagaaggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatcgctttcaaatggcacaccaaatcaaaca |
274 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||| ||| || | |||||||||||||||||||||| || |||||||||| ||||||||||| |
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|
| T |
29750015 |
acacttctggtagcatcagaaggaaggtacgacgttacttatccagttctaatcctcttgtttatcgccttaaaatggcacatcaaatcaaaca |
29750108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 34 - 308
Target Start/End: Original strand, 29742838 - 29743105
Alignment:
| Q |
34 |
tcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagctacgtgaatggctgaaacagattaagcgtgtcttctacgatgccgaaga |
133 |
Q |
| |
|
||||||| ||| ||||||| ||||| | |||||| |||||| | ||||| |||||||||||| ||||||| || ||| |||| || ||||| |
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|
| T |
29742838 |
tcaaagctgtgctgttggatgctgagctaaagcagaagcagaatcacgagcttcgtgaatggctgcaacagatcaaacgtatctt-------gcagaaga |
29742930 |
T |
|
| Q |
134 |
tgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttctcaaattctaat |
233 |
Q |
| |
|
||| || |||||||| | |||||||| ||||| |||||| | |||||||||| ||||||||| ||||||||||| || | | |||||| | ||||||| |
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|
| T |
29742931 |
tgtaatcgatgattttcagtgtgaggcattgcggaagcacatagtcaacacttctggtagcatcggaaggaaggtacaacgatacttctccagttctaat |
29743030 |
T |
|
| Q |
234 |
cctcttgtttatcgctttcaaatggcacaccaaatcaaacacatcaaagagagatttgataaggttgctgctgat |
308 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||| || || ||| ||| ||||||||||||||||| |
|
|
| T |
29743031 |
tttcttgtttatcgccttaaaatggcacatcaaatcaaacatattaataagaaattgaataaggttgctgctgat |
29743105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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