View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20772_low_8 (Length: 268)
Name: NF20772_low_8
Description: NF20772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20772_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 44553276 - 44553525
Alignment:
| Q |
1 |
cctttcctttctccttatacaaagcatccaactgatgaaaataaggacatgtctttgaatcttcgggtctctttttgttactttctttcactttcttgaa |
100 |
Q |
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| T |
44553276 |
cctttcctttctccttatacaaagcatccaactgatgaaaataaggacatgtctttgaatcttcgggtctctttttgttactctctttcactttcttgaa |
44553375 |
T |
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| Q |
101 |
gtacttgtttatattctcccatttttctttgcacctttttgcattcctattgtaaccgaggttcttcattgctaaagatatttcctcccatagaggacct |
200 |
Q |
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| T |
44553376 |
gtacttgtttatattctcccatttttctttgcacctttttgcattcctattgtaaccgaggttcttcattgctaaagatatctcctcccatagaggacct |
44553475 |
T |
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| Q |
201 |
tttggtccattctcttggtacttattgtccatgctcgtcctcagatttat |
250 |
Q |
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| T |
44553476 |
tttggtccattctcttggtacttattgtccatgctcgtcctcagatttat |
44553525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 44533733 - 44533654
Alignment:
| Q |
75 |
ttgttactttctttcactttcttgaagtacttgtttatattctcccatttttctttgcacctttttgcattcctattgta |
154 |
Q |
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| T |
44533733 |
ttgttactttccttcattttcttgtagtatttgttgatattctcccatttttctttgcacctttttgcattcctattgta |
44533654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 12683402 - 12683215
Alignment:
| Q |
36 |
tgaaaataaggacatgtctttgaatcttcgggtctctttttgttactttctttcactttcttgaagtacttgtttatattctcccatttttctttgcacc |
135 |
Q |
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| T |
12683402 |
tgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttgttaatgttttcccatttctctttgcacc |
12683303 |
T |
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| Q |
136 |
tttttgcattcctattgtaaccgaggttcttcattgctaaagatatttcctcccatagaggaccttttggtccattctcttggtactt |
223 |
Q |
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| T |
12683302 |
tctttgcattcctattgtaccccattttcttcatcaaccctgaaatctcctcccataatggccctttaggtccattctcttggtactt |
12683215 |
T |
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