View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20773_low_2 (Length: 285)
Name: NF20773_low_2
Description: NF20773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20773_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 28454680 - 28454908
Alignment:
| Q |
10 |
catcatcaacaatgctgaggtttcattggctcttgtttttataatgaaacattgttttaagttctcgacatcaaaaaagttcttgcgtataaaagaacct |
109 |
Q |
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| T |
28454680 |
catcatcaacaatgctgagctttcattggctcttgtttttataatgaaacattgttttaagttctcgacatcaaaaaagttcttgcgtataaaagaacct |
28454779 |
T |
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| Q |
110 |
acagagtacaggctacatagccatccttttttagggttggtttatgccatatggacatgaatttaaattggacatggtgataagttataatctgagcnnn |
209 |
Q |
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| T |
28454780 |
acagattacaggctacatagccatccttttttagggttggtttatgccatatagacatgaatttaaattggacatggtgataagttataatctgag--tt |
28454877 |
T |
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| Q |
210 |
nnnnattaatttaaactaagaaagatatacc |
240 |
Q |
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| T |
28454878 |
ttttattaatttaaactaagaaagatatacc |
28454908 |
T |
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