View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20773_low_4 (Length: 237)
Name: NF20773_low_4
Description: NF20773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20773_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 54859261 - 54859471
Alignment:
| Q |
12 |
gagatgaaagctgattcacgagacgttcgtgtccgttggtattactggccggaggagacaaagaagggtcggcgtcatttccatggctcaaaggagctta |
111 |
Q |
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| T |
54859261 |
gagatgaaagctgattcacgagacgttcgtgtccgttggtattactggccggaggagacaaagaagggtcggcgtcatttccatggctcaaaggagctta |
54859360 |
T |
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| Q |
112 |
ttctatctgatcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagcttgatgttgttggtga |
211 |
Q |
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| T |
54859361 |
ttctatctgatcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaagtacatgaagcttgatgttgttggtga |
54859460 |
T |
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| Q |
212 |
tgatgatttct |
222 |
Q |
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| T |
54859461 |
tgatgatttct |
54859471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 54853725 - 54853851
Alignment:
| Q |
96 |
ggctcaaaggagcttattctatctgatcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagc |
195 |
Q |
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| T |
54853725 |
ggctcaaaagagctttttctgtcagatcattttgatgttcagagtgctgatacaattgaaggaaagtgtgttgttcatggtttcaagagctacactaagc |
54853824 |
T |
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| Q |
196 |
ttgatgttgttggtgatgatgatttct |
222 |
Q |
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| T |
54853825 |
ttgatgctgttggtaatgatgatttct |
54853851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 38474728 - 38474817
Alignment:
| Q |
121 |
atcattttgatgttcagagtgttgatacaatcgaaggaaaatgtactgttcacagtttgaagaactacatgaagcttgatgttgttggtg |
210 |
Q |
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| T |
38474728 |
atcattatgatgttcatagtgctgacacaattgaagggaagtgttttgtgcacaatttgaagaactacatgaagcttgaagttgtaggtg |
38474817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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