View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20774_high_6 (Length: 396)
Name: NF20774_high_6
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20774_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 41686434 - 41686622
Alignment:
| Q |
1 |
ctagttttttccttaacttccttcaacaatttttcgtaattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41686434 |
ctagttttttccttaacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcag |
41686533 |
T |
|
| Q |
101 |
cttgaaacctcgttagtctctccaattcaaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctacacactaaaatt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
41686534 |
cttgaaacctcgttagtctctccaattcaaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctactcattaaaatt |
41686622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 41659450 - 41659817
Alignment:
| Q |
12 |
cttaacttccttcaacaatttttcgtaattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctc |
111 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| | ||||| ||| | |||||||| || |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41659450 |
cttaacttcctccaacaatgtttcataattactctgtgccctttttcctctttcgcatagttcctctctttttctcaaatcttcttcagcttgaaacctc |
41659549 |
T |
|
| Q |
112 |
gttagtctctccaattcaaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctacacactaaaatttcttcaacatcatcaaagtctt |
211 |
Q |
| |
|
| ||||||||||| |||||||||||||||| ||||||||| || | || ||| ||| ||||||| |||||||| | ||||| |||||||| | || |
|
|
| T |
41659550 |
atcagtctctccaagtcaaacttctcttgaaaatgtagaatctctgtgtgtagtctctcatatctactcactaaaaccttttcaagttcatcaaactgtt |
41659649 |
T |
|
| Q |
212 |
ctgtcaaaaacgtgattcgcaacttggaaacaagttgctgaatgctcatgtcttccaagtttctatggtcattcgaacacaacccaggttcgattttggg |
311 |
Q |
| |
|
||||| ||||| | ||| || |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41659650 |
ctgtccgaaacgctgtacgcgacaccgaaacaagttcctgaatgctcatgtcttccaagtttctatggtcatttgaacacaacccaggttcgattttggg |
41659749 |
T |
|
| Q |
312 |
ttgacgttccatgaaaaggcacaaaaaatacaaactttaggggaaatggggtttagtagaaaatgggtt |
380 |
Q |
| |
|
|| | ||| ||||| || || ||| || ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41659750 |
tttatgttacatgagaa-gccttaaagatgcaaactttaggggaaatggggtttaacagaaaatgggtt |
41659817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 41687898 - 41687584
Alignment:
| Q |
1 |
ctagttttttccttaacttccttcaacaatttttcgtaattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcag |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||| ||||| | |||||||||| ||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
41687898 |
ctagttttttgtttgacttccttcaacaatgcttcataattttgttgtgctcttttccctctttcacatagttcctctcttttcctcacatcttcctcaa |
41687799 |
T |
|
| Q |
101 |
cttgaaacctcgttagtctctccaattcaaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctacacactaaaatttcttcaacatc |
200 |
Q |
| |
|
|||||||||| |||||| | |||| ||||||||||||||||||||||||||||| | |||||||||||| | |||| |||||||| |||||||||| |
|
|
| T |
41687798 |
cttgaaaccttgttagtttttccatttcaaacttctcttgaagatgtagaattttcgtttgcagtttcttatctctagtcactaaaacctcttcaacatt |
41687699 |
T |
|
| Q |
201 |
atcaaagtcttctgtcaaaaacgtgattcgcaacttggaaacaagttgctgaatgctcatgtcttccaagtttctatggtcattcgaacacaacccaggt |
300 |
Q |
| |
|
||||||||||||||| | ||||| | || ||| ||||| |||| |||||||||||||||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
41687698 |
atcaaagtcttctgttagaaacgatgtgcgtaacacagaaaccagttcatgaatgctcatgtcttccaaatttctatggtcactcgaactcaacccaggt |
41687599 |
T |
|
| Q |
301 |
tcgattttgggttga |
315 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
41687598 |
tcagttttgggttga |
41687584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 41708823 - 41709093
Alignment:
| Q |
12 |
cttaacttccttcaacaatttttcgtaattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctc |
111 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41708823 |
cttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaacctc |
41708922 |
T |
|
| Q |
112 |
gttagtctctccaattcaaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctacacactaaaatttcttcaacatcatcaaagtctt |
211 |
Q |
| |
|
||| | |||||| ||||| |||||||||||||| || ||| ||| || ||| |||| ||||||| |||||||| ||||||| |||||| | || |
|
|
| T |
41708923 |
gtttttttctccatttcaaccttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaacctcttcaattctatcaaactgtt |
41709022 |
T |
|
| Q |
212 |
ctgtcaaaaacgtgattcgcaacttggaaacaagttgctgaatgctcatgtcttccaagtttctatggtca |
282 |
Q |
| |
|
|||||| ||| || |||||||| | || |||| ||||||| ||||| |||||||||| |||||||| |
|
|
| T |
41709023 |
ctgtcagaaatgttgttcgcaacaccaacaccagttcctgaatgttcatgccttccaagttcatatggtca |
41709093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 41717895 - 41718100
Alignment:
| Q |
12 |
cttaacttccttcaacaatttttcgtaattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctc |
111 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41717895 |
cttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaacctt |
41717994 |
T |
|
| Q |
112 |
gttagtctctccaattcaaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctacacactaaaatttcttcaacatcatcaaagtctt |
211 |
Q |
| |
|
||| | |||||| ||||| |||||||||||||| || ||| ||| || ||| |||| ||||||| ||||||||| |||||| |||||| |||| |
|
|
| T |
41717995 |
gtttttttctccatttcaaccttctcttgaagatctataatctcattttctagtctcttatatctactcactaaaatcccttcaattctatcaaattctt |
41718094 |
T |
|
| Q |
212 |
ctgtca |
217 |
Q |
| |
|
|||||| |
|
|
| T |
41718095 |
ctgtca |
41718100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 14690965 - 14690757
Alignment:
| Q |
7 |
ttttccttaacttccttcaacaatttttcgtaattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaa |
106 |
Q |
| |
|
|||| ||||| |||| ||||| ||||||| |||||||| ||||| || | |||| ||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
14690965 |
tttttcttaatttccatcaacgatttttcataattattctgtgccattttagctctctcacacagttcctcactcttcttcaaatcttcctcagcttgta |
14690866 |
T |
|
| Q |
107 |
acctcgttagtctctccaattcaaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctacacactaaaatttcttcaacatcatcaaa |
206 |
Q |
| |
|
|||| | | ||||||||| ||||||||||||| ||||| | |||| || | || |||||||||| ||| | |||||||||||||||||| |||||| |
|
|
| T |
14690865 |
acctagcttgtctctccatatcaaacttctcttaaagattttgaatctctgttttgagtttcttgtctctgctaactaaaatttcttcaacactatcaaa |
14690766 |
T |
|
| Q |
207 |
gtcttctgt |
215 |
Q |
| |
|
| |||||| |
|
|
| T |
14690765 |
ttgttctgt |
14690757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 14682512 - 14682416
Alignment:
| Q |
12 |
cttaacttccttcaacaatttttcgtaattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaac |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| || ||||||| ||||| | |||||| || || ||||| |||||||||| ||||||| |
|
|
| T |
14682512 |
cttaacttccttcaacaatttttcataattattctgtgcttttttccctctctcacacatttcctccctcttcctcaattcttcctcagattgaaac |
14682416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 14682419 - 14682325
Alignment:
| Q |
129 |
aaacttctcttgaagatgtagaatttcagcttgcagtttcttgtatctacacactaaaatttcttcaacatcatcaaagtcttctgtcaaaaacg |
223 |
Q |
| |
|
|||||||| |||||||||| || | || ||| | ||||||| ||||||| ||||||||||||||||||| |||||| | |||||||| ||||| |
|
|
| T |
14682419 |
aaacttctgttgaagatgttgattctctgctcggagtttctcatatctactcactaaaatttcttcaacactatcaaattgttctgtcagaaacg |
14682325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University