View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20774_high_8 (Length: 254)

Name: NF20774_high_8
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20774_high_8
NF20774_high_8
[»] chr3 (2 HSPs)
chr3 (17-232)||(38214294-38214509)
chr3 (17-232)||(38218513-38218728)
[»] chr8 (2 HSPs)
chr8 (38-229)||(42991023-42991214)
chr8 (20-227)||(35017692-35017899)
[»] chr7 (1 HSPs)
chr7 (74-195)||(37188574-37188695)
[»] chr4 (5 HSPs)
chr4 (94-195)||(53494981-53495082)
chr4 (74-195)||(53498939-53499060)
chr4 (74-195)||(53492634-53492755)
chr4 (76-173)||(53502099-53502196)
chr4 (56-200)||(52590708-52590852)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 38214294 - 38214509
Alignment:
Q  17 attacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214294 attacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctt 38214393  T
Q  117 tgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatga 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214394 tgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatga 38214493  T
Q  217 caactgcaccatatat 232  Q
    ||||||||||||||||    
T  38214494 caactgcaccatatat 38214509  T

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Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 38218513 - 38218728
Alignment:
Q  17 attacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218513 attacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctt 38218612  T
Q  117 tgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatga 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218613 tgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatga 38218712  T
Q  217 caactgcaccatatat 232  Q
    ||||||||||||||||    
T  38218713 caactgcaccatatat 38218728  T

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Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 42991214 - 42991023
Alignment:
Q  38 ggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttg 137  Q
    |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42991214 ggcttccagatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttg 42991115  T
Q  138 tgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatgacaactgcaccata 229  Q
    ||||||||||||| ||||  || ||||||||||| |||||||||||||||||||| || ||||| || || |||||||||||||||||||||    
T  42991114 tgtggagaatgtaaggattaccgctaacatttcccaagaactcaaaatcaatttcgtcgtgagttggcccttgtgatgacaactgcaccata 42991023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 35017899 - 35017692
Alignment:
Q  20 acttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctttgc 119  Q
    |||||||| |||||||| || ||||| ||||| |||||||||||||||||  | || ||||| ||||| |||||||||||||||||||| || ||||| |    
T  35017899 acttacatgatgtgttggggtttccaaatgatggagtaagtgtggaagtttctagtggggtcaaaccataggtagaattgttgttctctattacctttac 35017800  T
Q  120 cttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatgacaa 219  Q
    ||||||  || | ||||||||| ||||| || || || |||||    ||||| ||||||||||||||||| |||||||| || ||||| || |||||||     
T  35017799 cttgagtgaagatgtttgtgtgaagaatataagggtcaccacttgtgtttcccaagaactcaaaatcaatctcatcatgggttggtccttgggatgacag 35017700  T
Q  220 ctgcacca 227  Q
    ||| ||||    
T  35017699 ctgtacca 35017692  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 37188695 - 37188574
Alignment:
Q  74 gttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttccta 173  Q
    |||||||| ||||| |||||||||||||| |||||||| ||||| |||||   |||||| || ||||| |||||||| || || ||||| |  ||||| |    
T  37188695 gttgggtcaaaccataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttccca 37188596  T
Q  174 agaactcaaaatcaatttcatc 195  Q
    |||| ||||| |||||||||||    
T  37188595 agaattcaaagtcaatttcatc 37188574  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 53495082 - 53494981
Alignment:
Q  94 gaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttcctaagaactcaaaatcaatttca 193  Q
    ||||||||||||||| |||||||| |||||| ||||||| || ||||| ||| |||| || || ||||| ||||| |||||||| ||||| ||||| |||    
T  53495082 gaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttctccactcacattccctaagaattcaaagtcaatctca 53494983  T
Q  194 tc 195  Q
    ||    
T  53494982 tc 53494981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 53499060 - 53498939
Alignment:
Q  74 gttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttccta 173  Q
    |||||||| ||||| ||||| |||||||| |||||||| |||||||||||   |||||| || ||||| || ||||| ||||| ||||| | |||||| |    
T  53499060 gttgggtcaaaccaaaggtaaaattgttgctctctgttacctttgccttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttccca 53498961  T
Q  174 agaactcaaaatcaatttcatc 195  Q
    |||| ||||| ||||| |||||    
T  53498960 agaattcaaagtcaatctcatc 53498939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 53492755 - 53492634
Alignment:
Q  74 gttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttccta 173  Q
    |||||||| ||||| ||||| | |||||| |||||||  |||||||||||   |||||| || || || || ||||| ||||| ||||| | |||||| |    
T  53492755 gttgggtcaaaccaaaggtaaatttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcaccactcaaatttccca 53492656  T
Q  174 agaactcaaaatcaatttcatc 195  Q
    |||| ||||| |||||||||||    
T  53492655 agaattcaaagtcaatttcatc 53492634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 53502196 - 53502099
Alignment:
Q  76 tgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggatcgccactaacatttccta 173  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||||||   || || || ||||| || ||||| || || ||||| ||||||||||    
T  53502196 tgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttccta 53502099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 52590852 - 52590708
Alignment:
Q  56 taagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtagggat 155  Q
    |||||||| |||| |||||| ||||||||||| |  ||||||||||||||| | |||||||| ||||| | | | | |||||| || | ||| || ||||    
T  52590852 taagtgtgaaagtccttggtggggtcgaaccacaaatagaattgttgttctttatttcctttcccttgtgcataaatgtttgtatgaacaatataaggat 52590753  T
Q  156 cgccactaacatttcctaagaactcaaaatcaatttcatcatgag 200  Q
    | ||||| |  || || || || |||||||| |||||||||||||    
T  52590752 caccacttaagttacccaaaaattcaaaatctatttcatcatgag 52590708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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