View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20774_low_1 (Length: 572)
Name: NF20774_low_1
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20774_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 2040985 - 2041529
Alignment:
| Q |
18 |
gcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcat |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2040985 |
gcttcattctcagtctgagccactcttttgaccttagcctcatacagctgcaaccaagtgaatgaaactcttttttctttcatcttcttaactacttcat |
2041084 |
T |
|
| Q |
118 |
tagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041085 |
tagtgcaatttataccaaactgcttctcaaagaactttctccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcat |
2041184 |
T |
|
| Q |
218 |
caactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctca |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
2041185 |
caactggtcaagtgtgcagtgaggcaagattctctcaagcatatcatgatcaacatgactaacatctccaaggtattttacattatcaatacctttctca |
2041284 |
T |
|
| Q |
318 |
acacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttctttctcgcagata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2041285 |
acacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgatgatgatggcttctttctcgcagata |
2041384 |
T |
|
| Q |
418 |
cttcatcccttctcatcgtaatagcaagtttccttcgaaacaaaagcagtggatcgaaaacaaaggaacaaaaactcaatgagtaaaagtattagatatg |
517 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041385 |
cttcgtcccttctcatcgtaatagctagattccttcgaaacaaaagcagtggatcgaaaacaaaggaacaaaaactcaatgagtaaaagtattagatatg |
2041484 |
T |
|
| Q |
518 |
tttttcactgcaaccctaatggattttaacctatatatagtataa |
562 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2041485 |
tttttcactgcaaccctaatggcttttaacctatatatagtataa |
2041529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 1357793 - 1357444
Alignment:
| Q |
18 |
gcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1357793 |
gcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaatgaaactcttttttctttcatcttcttaactacttcat |
1357694 |
T |
|
| Q |
118 |
tagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcat |
217 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357693 |
tagtgcaatttataccaaattgcttttcaaagaactttttccacaatttatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcat |
1357594 |
T |
|
| Q |
218 |
caactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctca |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357593 |
caactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctca |
1357494 |
T |
|
| Q |
318 |
acacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacagg |
367 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
1357493 |
acacaaagatcaaccaaacatgtttgatcctttctcttcatcataacagg |
1357444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 1352659 - 1352250
Alignment:
| Q |
18 |
gcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcat |
117 |
Q |
| |
|
||||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
1352659 |
gcttcattctcagcccgagccatttttttgactttagcctcatacaactgcaaccaagtg-------------tttctttcatcttcttaactacttcat |
1352573 |
T |
|
| Q |
118 |
tagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcat |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||| |
|
|
| T |
1352572 |
tagtgcaatttataccaaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatccctttatttgtcttctcaatatgcat |
1352473 |
T |
|
| Q |
218 |
caactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctca |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1352472 |
caactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctca |
1352373 |
T |
|
| Q |
318 |
acacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttctttctcgcagata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
1352372 |
acacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgatgatgatggcttccttctcgcagata |
1352273 |
T |
|
| Q |
418 |
cttcatcccttctcatcgtaata |
440 |
Q |
| |
|
|||||| ||||||||| ||||| |
|
|
| T |
1352272 |
tttcatctcttctcatcataata |
1352250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 1364610 - 1364328
Alignment:
| Q |
18 |
gcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcat |
117 |
Q |
| |
|
||||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
1364610 |
gcttcattctcagcccgagccatttttttgactttagcctcatacaactgcaaccaagtg-------------tttctttcatcttcttaactacttcat |
1364524 |
T |
|
| Q |
118 |
tagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcat |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1364523 |
tagtgcaatttataccaaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcat |
1364424 |
T |
|
| Q |
218 |
caactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagcttt |
313 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1364423 |
caactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagcttt |
1364328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 36717705 - 36717295
Alignment:
| Q |
18 |
gcttcattctcagtctgagccacttttttgaccttagcctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcat |
117 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36717705 |
gcttcattctcagcctgagccattttttttaccttagcctcatacagctgcaaccaagtgaatgaaactcttttttctttcatcttcttaactacttcat |
36717606 |
T |
|
| Q |
118 |
tagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcat |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||| | | | ||||||||||||||| |
|
|
| T |
36717605 |
tagtgcaatttataccaaactgcttttcaaagaattttttccacaatttatcagttatagggctcaaatccatcccttcacttgccttctcaatatgcat |
36717506 |
T |
|
| Q |
218 |
caactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717505 |
caactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctca |
36717406 |
T |
|
| Q |
318 |
acacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttctttctcgcagata |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
36717405 |
acacaaagatcaaccaaagatgtttgatcctttctcttcatcataacaggattcctttgaaaca------------acgatggcttctttcttgcagata |
36717318 |
T |
|
| Q |
418 |
cttcatcccttctcatcgtaata |
440 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
36717317 |
tttcatcccttctcatcataata |
36717295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 67 - 361
Target Start/End: Original strand, 24620337 - 24620630
Alignment:
| Q |
67 |
gcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattg |
166 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||||| | |||||| |||||||| |||||| |||||||||||||||| |||| ||| ||||||||| || |
|
|
| T |
24620337 |
gcaaccatgtgaatgaaactattttttctttcatatccttaactacttcatttgtgcaaattataccaaactgcttttcaataaactttttccacagttt |
24620436 |
T |
|
| Q |
167 |
atctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatga |
266 |
Q |
| |
|
|| | |||| ||||||||||||||| || | ||| ||||||||||||||| | | |||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
24620437 |
attcgatatatggctcaaatccatcc-ttcattggccttctcaatatgcatgttccggtcaagtgtgcagtgaggcaagattcactcaagcatatgatga |
24620535 |
T |
|
| Q |
267 |
tcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcat |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
24620536 |
tcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaatatgtttgatcctttctcttcatcat |
24620630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 18179888 - 18180026
Alignment:
| Q |
55 |
cctcatacagctgcaaccaagtgaacgaaactcttttttctttcatcttcttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacat |
154 |
Q |
| |
|
||||||||| ||||||||| |||| || |||||||||||| ||||| || ||| | |||||| |||||| |||||||||||||||| ||||||||| | |
|
|
| T |
18179888 |
cctcatacaactgcaaccatctgaatgacactcttttttctgtcatcctcctaattatttcatttgtgcaacttataccaaactgcttttcaaagaactt |
18179987 |
T |
|
| Q |
155 |
tttccacaattgatctgttatagggctcaaatccatccc |
193 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
18179988 |
tttccacaatttatctgttaccgggctcaaatccatccc |
18180026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 203 - 333
Target Start/End: Original strand, 18180119 - 18180249
Alignment:
| Q |
203 |
cttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacatta |
302 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| ||||| |||||||||| ||| |||| |
|
|
| T |
18180119 |
cttctcgatatgcgtcaactggtcaagtgtgcagtgtggcaagattcgttcaagcagatgatgatcaacaggaccaacatttccaaggtatcttaaatta |
18180218 |
T |
|
| Q |
303 |
tcaatagctttctcaacacaaagatcaacca |
333 |
Q |
| |
|
|| |||||| | | ||||||||||||||||| |
|
|
| T |
18180219 |
tctatagctgtttgaacacaaagatcaacca |
18180249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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