View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20774_low_10 (Length: 242)

Name: NF20774_low_10
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20774_low_10
NF20774_low_10
[»] chr2 (40 HSPs)
chr2 (130-226)||(1174674-1174770)
chr2 (130-226)||(7005172-7005268)
chr2 (130-226)||(32149956-32150050)
chr2 (1-97)||(24451680-24451777)
chr2 (4-100)||(28572106-28572202)
chr2 (1-100)||(3100294-3100394)
chr2 (2-100)||(7213370-7213468)
chr2 (2-100)||(44534601-44534698)
chr2 (1-102)||(30757681-30757781)
chr2 (1-100)||(33751356-33751455)
chr2 (1-87)||(42881390-42881476)
chr2 (1-99)||(10818517-10818614)
chr2 (1-100)||(28108489-28108594)
chr2 (2-101)||(41435977-41436072)
chr2 (3-100)||(564992-565089)
chr2 (1-102)||(6685782-6685883)
chr2 (8-100)||(3123539-3123630)
chr2 (1-41)||(9724835-9724875)
chr2 (6-97)||(12872898-12872989)
chr2 (1-100)||(18181327-18181426)
chr2 (1-100)||(40964948-40965046)
chr2 (1-99)||(13221965-13222062)
chr2 (1-35)||(37529184-37529218)
chr2 (1-37)||(6972657-6972693)
chr2 (1-41)||(15859455-15859495)
chr2 (1-41)||(28925961-28926001)
chr2 (2-62)||(43077839-43077899)
chr2 (1-100)||(314330-314429)
chr2 (1-100)||(6075391-6075490)
chr2 (57-100)||(7649023-7649066)
chr2 (5-100)||(13375591-13375685)
chr2 (1-100)||(31348406-31348505)
chr2 (1-35)||(5212071-5212105)
chr2 (1-35)||(19009805-19009839)
chr2 (1-37)||(4794528-4794564)
chr2 (1-37)||(6723978-6724014)
chr2 (1-37)||(7931609-7931645)
chr2 (32-100)||(10394389-10394457)
chr2 (1-37)||(24356069-24356105)
chr2 (1-100)||(37247997-37248097)
[»] chr4 (41 HSPs)
chr4 (140-226)||(41727897-41727983)
chr4 (1-101)||(41710257-41710357)
chr4 (1-100)||(283590-283689)
chr4 (1-99)||(42024314-42024412)
chr4 (1-93)||(33047400-33047492)
chr4 (1-101)||(48740415-48740514)
chr4 (1-100)||(39976504-39976603)
chr4 (1-92)||(42185909-42186000)
chr4 (1-100)||(49812125-49812223)
chr4 (15-100)||(43420920-43421005)
chr4 (1-85)||(29644266-29644349)
chr4 (1-100)||(20964407-20964506)
chr4 (1-102)||(28330685-28330786)
chr4 (1-98)||(38861345-38861442)
chr4 (2-100)||(39053014-39053114)
chr4 (8-100)||(35998238-35998330)
chr4 (1-36)||(54729596-54729631)
chr4 (1-94)||(51527322-51527413)
chr4 (1-62)||(8294964-8295025)
chr4 (1-62)||(18849872-18849933)
chr4 (2-42)||(3685964-3686004)
chr4 (1-37)||(5291647-5291683)
chr4 (2-62)||(48400744-48400804)
chr4 (26-100)||(25390611-25390690)
chr4 (1-36)||(36047214-36047249)
chr4 (1-100)||(37316035-37316134)
chr4 (1-36)||(38319870-38319905)
chr4 (1-36)||(49218896-49218931)
chr4 (1-100)||(49306483-49306581)
chr4 (1-36)||(55360463-55360498)
chr4 (1-35)||(18873065-18873099)
chr4 (1-87)||(34020943-34021029)
chr4 (1-102)||(53848226-53848326)
chr4 (2-35)||(388534-388567)
chr4 (2-35)||(39979740-39979773)
chr4 (1-42)||(41203689-41203730)
chr4 (2-35)||(43335137-43335170)
chr4 (1-42)||(49448792-49448833)
chr4 (1-100)||(29656460-29656562)
chr4 (45-100)||(41371335-41371391)
chr4 (1-97)||(42544108-42544203)
[»] chr3 (30 HSPs)
chr3 (2-100)||(21585524-21585622)
chr3 (2-100)||(39365131-39365229)
chr3 (1-101)||(26134816-26134916)
chr3 (1-100)||(5245307-5245406)
chr3 (1-100)||(36317711-36317812)
chr3 (6-100)||(38600923-38601017)
chr3 (8-100)||(12744708-12744800)
chr3 (9-100)||(36097777-36097868)
chr3 (2-62)||(39866667-39866727)
chr3 (1-100)||(32023214-32023312)
chr3 (1-95)||(41031471-41031566)
chr3 (1-100)||(43640678-43640783)
chr3 (1-100)||(46194319-46194418)
chr3 (2-100)||(30261616-30261714)
chr3 (1-42)||(21296616-21296657)
chr3 (1-62)||(46786094-46786155)
chr3 (1-94)||(48744126-48744219)
chr3 (2-102)||(51164842-51164945)
chr3 (1-102)||(54122337-54122436)
chr3 (20-100)||(1334907-1334987)
chr3 (1-101)||(39329863-39329963)
chr3 (1-36)||(36790986-36791021)
chr3 (1-111)||(33994542-33994651)
chr3 (1-51)||(54493853-54493902)
chr3 (1-42)||(1772225-1772266)
chr3 (1-42)||(2868527-2868568)
chr3 (1-34)||(9017760-9017793)
chr3 (1-62)||(54458423-54458484)
chr3 (1-37)||(26479943-26479979)
chr3 (1-41)||(49003224-49003264)
[»] chr1 (40 HSPs)
chr1 (1-101)||(4466268-4466368)
chr1 (1-97)||(16039975-16040071)
chr1 (1-100)||(11425983-11426082)
chr1 (1-100)||(27698707-27698806)
chr1 (2-84)||(36467310-36467391)
chr1 (1-92)||(8773141-8773232)
chr1 (1-101)||(32347838-32347938)
chr1 (1-100)||(52830527-52830625)
chr1 (1-71)||(8327641-8327711)
chr1 (2-87)||(28839247-28839333)
chr1 (1-100)||(2886066-2886165)
chr1 (4-97)||(26583626-26583719)
chr1 (1-93)||(19533033-19533125)
chr1 (1-100)||(45889362-45889464)
chr1 (8-86)||(17724835-17724913)
chr1 (1-87)||(29225661-29225747)
chr1 (1-55)||(36784254-36784308)
chr1 (1-98)||(46536236-46536334)
chr1 (2-100)||(7787568-7787670)
chr1 (1-42)||(10370301-10370342)
chr1 (1-102)||(17342721-17342822)
chr1 (1-86)||(46495927-46496012)
chr1 (1-94)||(48242704-48242796)
chr1 (1-102)||(50333828-50333929)
chr1 (1-70)||(51848810-51848879)
chr1 (1-37)||(29225521-29225557)
chr1 (1-37)||(29756258-29756294)
chr1 (2-37)||(2219562-2219597)
chr1 (1-36)||(6784962-6784997)
chr1 (57-100)||(11324140-11324183)
chr1 (57-100)||(11482161-11482204)
chr1 (2-41)||(43895801-43895840)
chr1 (1-95)||(3555669-3555762)
chr1 (1-35)||(15290450-15290484)
chr1 (2-60)||(34877204-34877262)
chr1 (2-35)||(14358121-14358154)
chr1 (2-42)||(7785388-7785428)
chr1 (1-37)||(16451589-16451625)
chr1 (1-37)||(16460742-16460778)
chr1 (1-41)||(51049463-51049503)
[»] chr7 (32 HSPs)
chr7 (1-100)||(2846789-2846888)
chr7 (2-100)||(33774155-33774253)
chr7 (1-100)||(7425992-7426089)
chr7 (1-101)||(29257441-29257541)
chr7 (1-100)||(5724820-5724921)
chr7 (1-100)||(33584457-33584557)
chr7 (1-100)||(11616450-11616555)
chr7 (1-98)||(46288544-46288640)
chr7 (1-100)||(32775877-32775977)
chr7 (5-101)||(48981273-48981369)
chr7 (1-102)||(31581556-31581663)
chr7 (1-100)||(12308275-12308373)
chr7 (1-100)||(30462911-30463010)
chr7 (1-100)||(37496510-37496609)
chr7 (2-97)||(45890950-45891045)
chr7 (1-100)||(39693682-39693785)
chr7 (8-86)||(44604597-44604675)
chr7 (1-62)||(34963924-34963985)
chr7 (1-37)||(10355848-10355884)
chr7 (1-100)||(21387719-21387816)
chr7 (2-62)||(29434694-29434754)
chr7 (1-85)||(40038223-40038307)
chr7 (1-100)||(46095561-46095658)
chr7 (2-37)||(37264271-37264306)
chr7 (1-36)||(40023839-40023874)
chr7 (6-36)||(32972388-32972418)
chr7 (1-51)||(40590938-40590988)
chr7 (1-93)||(23703817-23703910)
chr7 (1-42)||(37157124-37157165)
chr7 (1-37)||(2849213-2849249)
chr7 (1-37)||(30659593-30659629)
chr7 (1-41)||(47453958-47453998)
[»] chr8 (35 HSPs)
chr8 (1-100)||(21587171-21587270)
chr8 (1-100)||(38252551-38252650)
chr8 (8-100)||(2119611-2119703)
chr8 (1-100)||(5391943-5392042)
chr8 (1-100)||(14689855-14689954)
chr8 (1-100)||(28802662-28802761)
chr8 (1-100)||(32967390-32967489)
chr8 (1-100)||(44790536-44790634)
chr8 (2-102)||(31410722-31410822)
chr8 (3-100)||(44615480-44615578)
chr8 (2-102)||(12653578-12653681)
chr8 (1-101)||(14748820-14748920)
chr8 (1-100)||(29615690-29615792)
chr8 (1-101)||(34287192-34287292)
chr8 (1-85)||(42558694-42558778)
chr8 (1-60)||(31132664-31132723)
chr8 (2-100)||(138929-139026)
chr8 (1-51)||(33191022-33191072)
chr8 (1-102)||(45421053-45421154)
chr8 (1-91)||(39171450-39171537)
chr8 (1-36)||(886561-886596)
chr8 (1-100)||(2195363-2195462)
chr8 (1-100)||(2796934-2797033)
chr8 (1-36)||(32231833-32231868)
chr8 (5-100)||(34132976-34133071)
chr8 (1-36)||(41726480-41726515)
chr8 (1-35)||(32241537-32241571)
chr8 (3-37)||(45197569-45197603)
chr8 (2-62)||(5962587-5962648)
chr8 (1-37)||(8566519-8566555)
chr8 (3-35)||(8618088-8618120)
chr8 (1-37)||(9734471-9734507)
chr8 (1-41)||(22325068-22325108)
chr8 (2-42)||(29730982-29731022)
chr8 (1-37)||(37459308-37459344)
[»] chr6 (14 HSPs)
chr6 (1-100)||(33109268-33109367)
chr6 (1-94)||(15081324-15081417)
chr6 (1-100)||(30064062-30064160)
chr6 (10-100)||(7359138-7359228)
chr6 (1-100)||(33921582-33921681)
chr6 (1-101)||(3604713-3604813)
chr6 (1-37)||(9755259-9755295)
chr6 (1-36)||(4552861-4552896)
chr6 (1-35)||(2310401-2310435)
chr6 (1-35)||(20027554-20027588)
chr6 (1-35)||(31723454-31723488)
chr6 (57-102)||(34915980-34916025)
chr6 (1-37)||(8232423-8232459)
chr6 (1-37)||(34441850-34441886)
[»] chr5 (41 HSPs)
chr5 (1-100)||(5357931-5358030)
chr5 (1-100)||(6610730-6610829)
chr5 (9-100)||(3725082-3725173)
chr5 (2-100)||(11099592-11099691)
chr5 (3-100)||(39060528-39060628)
chr5 (1-102)||(42575752-42575853)
chr5 (1-100)||(33012249-33012348)
chr5 (1-100)||(35334640-35334741)
chr5 (1-102)||(39008023-39008123)
chr5 (1-100)||(4044590-4044690)
chr5 (1-89)||(30437855-30437942)
chr5 (1-100)||(8369811-8369910)
chr5 (1-100)||(35646203-35646303)
chr5 (1-100)||(25814255-25814358)
chr5 (1-85)||(7613617-7613701)
chr5 (5-100)||(33988094-33988190)
chr5 (7-100)||(4475140-4475233)
chr5 (1-62)||(8692932-8692993)
chr5 (1-97)||(15814560-15814657)
chr5 (1-62)||(41184050-41184111)
chr5 (1-37)||(4194598-4194634)
chr5 (1-37)||(16926203-16926239)
chr5 (1-36)||(4412342-4412377)
chr5 (1-36)||(9426667-9426702)
chr5 (1-36)||(13016478-13016513)
chr5 (1-36)||(13087856-13087891)
chr5 (1-36)||(13597988-13598023)
chr5 (1-36)||(14184163-14184198)
chr5 (1-36)||(20369234-20369269)
chr5 (1-36)||(31090263-31090298)
chr5 (10-97)||(41686614-41686701)
chr5 (1-35)||(15898152-15898186)
chr5 (5-35)||(19889877-19889907)
chr5 (1-35)||(24534562-24534596)
chr5 (1-62)||(858268-858329)
chr5 (2-91)||(5072856-5072945)
chr5 (1-101)||(22582985-22583086)
chr5 (1-34)||(35585731-35585764)
chr5 (1-97)||(7276282-7276377)
chr5 (1-37)||(7871271-7871307)
chr5 (1-65)||(39212671-39212735)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-100)||(394672-394772)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-100)||(26218-26316)
[»] scaffold0034 (1 HSPs)
scaffold0034 (11-92)||(97962-98043)
[»] scaffold0028 (1 HSPs)
scaffold0028 (18-87)||(26517-26585)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-42)||(230210-230251)
scaffold0007 (1-37)||(157985-158021)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 1174770 - 1174674
Alignment:
Q  130 gccttctagggtgagcgaccttgataggtctctcacggtgagagagtattattaactgttagattgtaagctttcaagattgttatgatgcactacc 226  Q
    |||||||  |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1174770 gccttctgaggtgagcgaccttgataggtctctcacgatgagagaatattattaactgttagattgtaagctttcaagattgttatgatgcactacc 1174674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 7005268 - 7005172
Alignment:
Q  130 gccttctagggtgagcgaccttgataggtctctcacggtgagagagtattattaactgttagattgtaagctttcaagattgttatgatgcactacc 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||||||||||||||||    
T  7005268 gccttctagggtgagcgactttgataggtctctcacggtgagagagtattattaaccgttagagagtaagctttcaaaattgttatgatgcactacc 7005172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 32150050 - 32149956
Alignment:
Q  130 gccttctagggtgagcgaccttgataggtctctcacggtgagagagtattattaactgttagattgtaagctttcaagattgttatgatgcactacc 226  Q
    ||||| |||||||||||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  32150050 gccttttagggtgagcgaccttgataagtctctcacggtgagag--tattattaaccgttagattgtaagcttttaagattgttatgatgcactacc 32149956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24451777 - 24451680
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac-ttttttattgaaaataactcagttattatggaacggaggga 97  Q
    |||||| ||||||||||||||||||||||||||||| || ||  ||||||| | || |||||||||||||||  |||||||||||||| |||||||||    
T  24451777 aaaaaaataattaatattgtattggaaagtgaaatgacttagttattttgggatactttttttattgaaaatggctcagttattatgggacggaggga 24451680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 28572202 - 28572106
Alignment:
Q  4 aaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||  ||| ||||  |||||||||| ||| ||||||||||||    
T  28572202 aaagtaattaatattgtattgaaaagtgaaatgactcagttattttgggacactttttatttgcaaatgtctcagttattgtgggacggagggagta 28572106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 3100394 - 3100294
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac-ttttttattgaaaataactcagttattatggaacggagggagt 99  Q
    |||||||||||||||||||||||| ||||||||||| |||||  ||||||  |||| |||||| ||| ||||  |||||||||| ||| |||||||||||    
T  3100394 aaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgagacacttttttttttgcaaatggctcagttattgtgggacggagggagt 3100295  T
Q  100 a 100  Q
    |    
T  3100294 a 3100294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 7213468 - 7213370
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||||||| |||||||||||  | |   ||||||| |||||| ||| ||| |||| ||||| ||||||||| ||||||||||||    
T  7213468 aaaaagtaattaatattgtattgaaaagtgaaatgatttaattattttgggacacttattttttgcaaatgactcacttattatgggacggagggagta 7213370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 44534601 - 44534698
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||  ||||||  ||| |||||| ||| |||| ||||||||||| ||| ||||| ||||||    
T  44534601 aaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgagaca-tttttttttgtaaatgactcagttattgtgggacggatggagta 44534698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 30757681 - 30757781
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||||||  ||||||||   ||||| | |||||||| | ||| ||||  |||||||||||||| ||||||||||||    
T  30757681 aaaaaagtaattaatattgtattgaaaagtg-tatggctcattaatttttggacacttttcttttgcaaatggctcagttattatgggacggagggagta 30757779  T
Q  101 at 102  Q
    ||    
T  30757780 at 30757781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33751455 - 33751356
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||  ||||||| ||||||||||| ||||   ||||| | |||||||||||||||||||   ||||||| ||||  ||||||||||||    
T  33751455 aaaaaagtaattaatgatgtattgaaaagtgaaatgactcatttatttttggacacttttttattgaaaatggttcagttagtatgagacggagggagta 33751356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 42881390 - 42881476
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac-ttttttattgaaaataactcagttattatgg 87  Q
    |||||||||||||||||||||||| |||||||||||  ||||  ||||| |||||| |||||||||||||||  ||||||| ||||||    
T  42881390 aaaaaagtaattaatattgtattgaaaagtgaaatgattcagttatttt-gaacactttttttattgaaaatggctcagttgttatgg 42881476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10818614 - 10818517
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagt 99  Q
    |||||||||||||||||| ||||  ||| ||||||| |||||  ||||||  ||||||||| ||||||||| |||||| |||||||| || ||||||||    
T  10818614 aaaaaagtaattaatattatattaaaaaatgaaatgactcagttattttgagacacttttt-attgaaaatgactcagatattatgggacagagggagt 10818517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28108489 - 28108594
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac------ttttttattgaaaataactcagttattatggaacggag 94  Q
    ||||||||||||||| |||||||| |||||| ||||||||||  |||||||| |||      |||||| ||| ||||  |||||||||||||| ||||||    
T  28108489 aaaaaagtaattaatgttgtattgaaaagtggaatggctcagttattttggaccactttttttttttttttgcaaatggctcagttattatgggacggag 28108588  T
Q  95 ggagta 100  Q
    ||||||    
T  28108589 ggagta 28108594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 41436072 - 41435977
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagtaa 101  Q
    ||||||||||||||||||||||| ||||||||||| |||||  |||||| |||| ||||||     || |  |||||||||||||||||||| |||||||    
T  41436072 aaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgaaacattttttt----taattggctcagttattatggaacggaaggagtaa 41435977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 565089 - 564992
Alignment:
Q  3 aaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||| ||||| |||||  | ||  ||||||| |||||||||| ||| || | ||| || |||||||| ||||||||||||    
T  565089 aaaagtaattaatattgtattgaaaagtaaaatgatttagttattttgggacacttttttcttgcaagtgactgagctattatgggacggagggagta 564992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 6685782 - 6685883
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||||||| ||| ||||||||| |||    | |||| ||| | |||| ||| |||| |||| |||||||||| ||||||||||||    
T  6685782 aaaaaagtaattaatattgtattagaatgtgaaatgggtcaagattcttgggacaatatttttttgcaaatcactccgttattatgggacggagggagta 6685881  T
Q  101 at 102  Q
    ||    
T  6685882 at 6685883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 3123630 - 3123539
Alignment:
Q  8 taattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||||||||||||| |||||  ||||| ||    |||||| ||| || | ||||||||||||||| ||||||||||||    
T  3123630 taattaatattgtattggaaagtgaaatgactcagttatttt-gagatttttttttttgcaattgactcagttattatgggacggagggagta 3123539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9724875 - 9724835
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctca 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  9724875 aaaaaagtaattaatattgtattgaaaagtgaaatggctca 9724835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 12872989 - 12872898
Alignment:
Q  6 agtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggaggga 97  Q
    |||||||||||||| |||| ||||||||||   ||||  ||||||| ||| | |||||||| ||| |||||||||||| ||| |||||||||    
T  12872989 agtaattaatattgaattgaaaagtgaaatatgtcagttattttggtacaatattttattgcaaaaaactcagttattttgggacggaggga 12872898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 18181327 - 18181426
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||| |||||||||||| ||||  ||||| | ||| | ||||  |  ||| | |||||||||||||| ||||||||||||    
T  18181327 aaaaaaataattaatattgtattgaaaagtgaaatgggtcagttattttaggacaatatttttctacaaaaagctcagttattatgggacggagggagta 18181426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 40965046 - 40964948
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||| | ||||  |||||  ||||||| ||| || ||| ||| |||| ||||||||||||||| || |||||||||    
T  40965046 aaaaaagtaattaatattgtattgaaaaat-aaataactcagttattttgggacatttcttttttgcaaatgactcagttattatgggactgagggagta 40964948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13222062 - 13221965
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagt 99  Q
    |||||| ||||||||||||||||| |||||||||||| |||    || ||| ||| | |||| ||| |||| ||||||||||||||| |||||||||||    
T  13222062 aaaaaaataattaatattgtattgaaaagtgaaatgg-tcaatttttatgggacaatatttttttgcaaatgactcagttattatgggacggagggagt 13221965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37529184 - 37529218
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  37529184 aaaaaagtaattaatattgtattggaaagtgaaat 37529218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6972657 - 6972693
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6972657 aaaaaagtaattaatattgtattgaaaagtgaaatgg 6972693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15859455 - 15859495
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctca 41  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  15859455 aaaaaagtaattaatattgtattgaaaagtgaaatgactca 15859495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28925961 - 28926001
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctca 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  28925961 aaaaaagtaattaatattgtattgaaaaatgaaatggctca 28926001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 43077839 - 43077899
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    ||||| ||||||||||||||||| ||||||||||| ||| |  ||||||| ||||||||||    
T  43077839 aaaaaataattaatattgtattgaaaagtgaaatgactccgttattttgggacactttttt 43077899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 314429 - 314330
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||| |||||||||||| |||    || | | ||| | |||| ||| |||| ||||||||||||||| |||| |||||||    
T  314429 aaaaaaataattaatattgtattgaaaagtgaaatggatcaatttttctaggacaatatttttttgcaaatgactcagttattatgggacggggggagta 314330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6075490 - 6075391
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| |||||| ||||||| || |||||||||| | |||    |||| | ||| | |||| ||| ||||| |||||||||||||||||||||||||||    
T  6075490 aaaaaaataattattattgtagtgaaaagtgaaatagatcaattttttttggacaatatttttttgcaaatagctcagttattatggaacggagggagta 6075391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 7649023 - 7649066
Alignment:
Q  57 ttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||    
T  7649023 tttttttttgcaaatgactcagttattatggaacggagggagta 7649066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 13375591 - 13375685
Alignment:
Q  5 aagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||| ||||||||||| |||||  ||||||  ||| |||||| ||| |||| ||||  |||||||   ||||||||||||    
T  13375591 aagtaattaatattgtattgaaaagtgaaatgactcagttattttgagaca-tttttttttgcaaatgactccattattataagacggagggagta 13375685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 31348505 - 31348406
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||| |||||||| |||    || | | ||| | |||| ||| ||||  |||||||||||||| ||||||||||||    
T  31348505 aaaaaagtaattaatattgtattgaaaattgaaatgggtcaatttttctaggacaatatttttttgcaaatggctcagttattatgggacggagggagta 31348406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5212071 - 5212105
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  5212071 aaaaaagtaattaatattgtattgaaaagtgaaat 5212105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19009839 - 19009805
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  19009839 aaaaaagtaattaatattgtattgaaaagtgaaat 19009805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4794564 - 4794528
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  4794564 aaaaaattaattaatattgtattgaaaagtgaaatgg 4794528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6723978 - 6724014
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  6723978 aaaaaagaaattaatattgtattgaaaagtgaaatgg 6724014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7931609 - 7931645
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  7931609 aaaaaagtaattaatgttgtattgaaaagtgaaatgg 7931645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 10394389 - 10394457
Alignment:
Q  32 aaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||| |||||  ||||||| ||||||| || | ||||||  |||||||||||||| ||||||||||||    
T  10394389 aaatgactcagttattttgggacactttattttggaaaatggctcagttattatgggacggagggagta 10394457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24356105 - 24356069
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  24356105 aaaaaagtaattaatgttgtattgaaaagtgaaatgg 24356069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 37247997 - 37248097
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttt-ttattgaaaataactcagttattatggaacggagggagt 99  Q
    |||||| |||||||   ||||||| ||||||||| | ||||   ||||||| | |||||| ||||||||||| ||||| ||||||| | |||||||||||    
T  37247997 aaaaaattaattaaatatgtattgaaaagtgaaacgactcacttattttgggatactttttttattgaaaatgactcaattattattggacggagggagt 37248096  T
Q  100 a 100  Q
    |    
T  37248097 a 37248097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 41727983 - 41727897
Alignment:
Q  140 gtgagcgaccttgataggtctctcacggtgagagagtattattaactgttagattgtaagctttcaagattgttatgatgcactacc 226  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  41727983 gtgagtgaccttgataggtctctcacggtgagagagtattattaactattagattgtaagcttttaagattgttatgatgcactacc 41727897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41710257 - 41710357
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||  ||||||| |||||||||| |||||   ||||||| ||||||||||||||||||| ||||||||||||||  ||||| ||||||    
T  41710257 aaaaaagtaattaatgatgtattgaaaagtgaaatagctcacttattttgggacacttttttattgaaaatgactcagttattatgagacggatggagta 41710356  T
Q  101 a 101  Q
    |    
T  41710357 a 41710357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 283590 - 283689
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||| |||| |||||||||||||| ||  ||||||| ||||||| || ||| |||| ||| ||||||||||| |||||| |||||    
T  283590 aaaaaagtaattaatattgcattgaaaagtgaaatggcttagatattttgggacactttgtttttgcaaatgacttagttattatgggacggagtgagta 283689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 42024314 - 42024412
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagt 99  Q
    |||||| ||||||||  ||||||| ||||||||||| ||||   || || | ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  42024314 aaaaaaataattaatgatgtattgaaaagtgaaatgactcatttatcttaggacacttttttattgaaaatgactcagttattatgggacggagggagt 42024412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 33047492 - 33047400
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacgga 93  Q
    ||||| |||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||| ||| ||||  |||| ||||||||| |||||    
T  33047492 aaaaatgtaattaatattgtattgaaaagtgaaatgactcagttattttgggacactttttttttgcaaatggctcaattattatgggacgga 33047400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 48740514 - 48740415
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||| ||| ||||||||||| |||||  ||||||  ||| |||||| ||| |||| ||||||||||||||  ||||||||||||    
T  48740514 aaaaaagtaattaatattgttttgaaaagtgaaatgactcagttattttgagaca-tttttttttgcaaatgactcagttattatgagacggagggagta 48740416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 39976504 - 39976603
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||| |||| ||| ||||||| |||||  ||||||| ||||||| || ||| |||| ||||||||||||||  |||||| |||||    
T  39976504 aaaaaagtaattaatattgcattgaaaaatgaaatgactcagatattttgggacactttgtttttgcaaatgactcagttattatgagacggagtgagta 39976603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 42185909 - 42186000
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacgg 92  Q
    |||||||||||||||  ||||||| ||||| ||||| ||||   ||||||| ||| ||||||||||||||| ||||||||||||||| ||||    
T  42185909 aaaaaagtaattaatgatgtattgaaaagtaaaatgactcacttattttgggacatttttttattgaaaatgactcagttattatgggacgg 42186000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 49812223 - 49812125
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||| ||||||||||| |||||  ||||||| ||| |||||| ||| |||||||||  ||||||||| ||| ||||||||    
T  49812223 aaaaaaataattaatattgtattgaaaagtgaaatgactcagttattttgggaca-tttttttttgcaaataactctattattatgggacgaagggagta 49812125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 43421005 - 43420920
Alignment:
Q  15 tattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||| |||||||||||||||||  ||||||||||| |||||| ||| |||  | ||||||||| ||| ||||||||||||    
T  43421005 tattgtattgaaaagtgaaatggctcagttattttggaacattttttttttgcaaaagaatcagttattgtgggacggagggagta 43420920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29644349 - 29644266
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattat 85  Q
    |||||||| ||||||||||||||| ||||||||||| |||||  ||||||| ||| |||||| ||| |||| |||||||||||||    
T  29644349 aaaaaagttattaatattgtattgaaaagtgaaatgtctcagttattttgggacaatttttt-ttgcaaatgactcagttattat 29644266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 20964407 - 20964506
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| |||||||||| | |||    || ||| ||| | |||| ||| |||| ||||||||||||||| ||||||||||||    
T  20964407 aaaaaagtaattaatattgtattgaaaagtgaaataggtcaatttttctgggacaatatttttttgcaaatgactcagttattatgggacggagggagta 20964506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 28330786 - 28330685
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| |||||||||||| |||    || ||| ||| | |||| ||| ||||   ||||||||||||| ||||||||||||    
T  28330786 aaaaaagtaattaatattgtattgaaaagtgaaatgggtcaatttttatgggacagtatttttttgcaaatgggtcagttattatgggacggagggagta 28330687  T
Q  101 at 102  Q
    ||    
T  28330686 at 28330685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 38861345 - 38861442
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggag 98  Q
    |||||| ||||||||  |||||||  |||||||||| ||||   ||||||||||||||||||||| ||||| |||| ||||||| |||| ||| ||||    
T  38861345 aaaaaaataattaatgatgtattgagaagtgaaatgactcatttattttggaacacttttttattaaaaatgactcggttattaaggaagggatggag 38861442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 39053014 - 39053114
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaaca--cttttttattgaaaataactcagttattatggaacggagggagt 99  Q
    ||||| || |||||||| ||||| ||||||||||||||||   ||||||  |||   |||||| ||| |||| |||||||||||||||||||||||||||    
T  39053014 aaaaaatagttaatattatattgaaaagtgaaatggctcaattattttgtgacattttttttttttgtaaatgactcagttattatggaacggagggagt 39053113  T
Q  100 a 100  Q
    |    
T  39053114 a 39053114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 35998238 - 35998330
Alignment:
Q  8 taattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||| | ||||||||||| ||||   ||||||||    |||||| |||||||| |||| |||||||||| ||||||||||||    
T  35998238 taattaatattgtatcgaaaagtgaaatgactcaattattttggattttttttttgttgaaaatgactccgttattatgggacggagggagta 35998330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 54729596 - 54729631
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  54729596 aaaaaagtaattaatattgtattggaaagtgaaatg 54729631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 51527413 - 51527322
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggag 94  Q
    |||||||||||||||||||||||  ||||||||||| |||||  | |||||||| ||||||| |   ||||  |||||||| ||||||||||||    
T  51527413 aaaaaagtaattaatattgtattaaaaagtgaaatgactcagttactttggaacccttttttgt--caaatggctcagttagtatggaacggag 51527322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8295025 - 8294964
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    ||||| |||||||||||||||||| ||||||||||| ||| |  ||||||| ||||||||||    
T  8295025 aaaaaggtaattaatattgtattgaaaagtgaaatgactcggttattttgggacactttttt 8294964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18849872 - 18849933
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    |||||||||||||||||| ||||| ||||||||||| |||||  ||||||| ||| ||||||    
T  18849872 aaaaaagtaattaatattttattgaaaagtgaaatgactcagttattttgggacattttttt 18849933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 3686004 - 3685964
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  3686004 aaaaaataattaatattgtattggaaagtgaaatgactcag 3685964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5291683 - 5291647
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5291683 aaaaaagtaattaatattgtattgaaaagtgaaatgg 5291647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 48400744 - 48400804
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    ||||||||||||||||||||||| ||||||||||| ||||   ||||| ||||| ||||||    
T  48400744 aaaaagtaattaatattgtattgaaaagtgaaatgactcaattatttttgaacattttttt 48400804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 25390690 - 25390611
Alignment:
Q  26 aaagtgaaatggctcagccattttggaacacttttttatt-----gaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||  ||||||| |||||||||| ||     | |||| ||||||||||||||| ||||||||||||    
T  25390690 aaagtgaaatggctcagttattttgggacactttttttttttgttgcaaatgactcagttattatgggacggagggagta 25390611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36047214 - 36047249
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  36047214 aaaaaagtaattaatattgtattgaaaagtgaaatg 36047249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 37316035 - 37316134
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||| |||||||||||||||||| |||||||||||| |||    || || |||| | |||| |||||||| ||||| |||||||   ||||||||||||    
T  37316035 aaaaatgtaattaatattgtattgaaaagtgaaatggatcaatttttctgaaacaatatttttttgaaaatgactcaattattataagacggagggagta 37316134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38319905 - 38319870
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  38319905 aaaaaagtaattaatattgtattgaaaagtgaaatg 38319870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 49218896 - 49218931
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  49218896 aaaaaagtaattaatattgtattgaaaagtgaaatg 49218931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 49306581 - 49306483
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttt---tttattgaaaataactcagttattatggaacggaggga 97  Q
    |||||| ||||||||  ||||||| ||||||||||||||||   ||||||| |||||||   |||||||||||| ||    ||||||||| |||||||||    
T  49306581 aaaaaaataattaatgatgtattgaaaagtgaaatggctcacttattttgggacactttttatttattgaaaatgac----ttattatgggacggaggga 49306486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 55360463 - 55360498
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  55360463 aaaaaagtaattaatattgtattgaaaagtgaaatg 55360498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18873065 - 18873099
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  18873065 aaaaaagtaattaatattgtattgaaaagtgaaat 18873099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 34021029 - 34020943
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatgg 87  Q
    |||||| ||||| ||||||||||| ||||||||||| ||||   ||||||  ||| |||||| ||| |||| |||| ||||||||||    
T  34021029 aaaaaaataatttatattgtattgaaaagtgaaatgactcacttattttgagacattttttttttgcaaatgactcggttattatgg 34020943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 53848326 - 53848226
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattt--tggaacacttttttattgaaaataactcagttattatggaacggagggag 98  Q
    |||||| ||||||||||||||||| |||||||||||| |||   ||||  ||  ||| | |||| ||| |||| ||||||||||||||| | ||||||||    
T  53848326 aaaaaaataattaatattgtattgaaaagtgaaatgggtca---attttctgagacaatatttttttgcaaatgactcagttattatgggatggagggag 53848230  T
Q  99 taat 102  Q
    ||||    
T  53848229 taat 53848226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 388534 - 388567
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaat 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  388534 aaaaagtaattaatattgtattgaaaagtgaaat 388567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 39979773 - 39979740
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaat 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  39979773 aaaaagtaattaatattgtattgaaaagtgaaat 39979740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41203730 - 41203689
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  41203730 aaaaaagtaattaatattgtattgataagtgaaatgactcag 41203689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 43335137 - 43335170
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaat 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  43335137 aaaaagtaattaatattgtattgaaaagtgaaat 43335170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49448833 - 49448792
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    |||||||||||||||||| ||||| |||||||||||| ||||    
T  49448833 aaaaaagtaattaatattatattgaaaagtgaaatggatcag 49448792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29656562 - 29656460
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac---ttttttattgaaaataactcagttattatggaacggaggga 97  Q
    |||||| ||||||||  ||||||| |||||||||||| |||   ||||||| ||||   ||||||||| |||||  |||||||||||||| ||| ||| |    
T  29656562 aaaaaaataattaatgatgtattgaaaagtgaaatggttcacttattttgggacactttttttttattaaaaatggctcagttattatgggacgaaggaa 29656463  T
Q  98 gta 100  Q
    |||    
T  29656462 gta 29656460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 41371335 - 41371391
Alignment:
Q  45 attttggaacactttttt-attgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||| |||||||||| ||| ||||| ||| | ||||||||||||||||||||||    
T  41371335 attttgggacactttttttattaaaaatgacttaattattatggaacggagggagta 41371391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 42544203 - 42544108
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggaggga 97  Q
    ||||||||| |||||  ||||||| ||||||||||| ||||   |||||   |||||||||| ||||||||  |||||||||||||  |||||||||    
T  42544203 aaaaaagtagttaatgatgtattgaaaagtgaaatgactcatttattttatgacactttttt-ttgaaaatggctcagttattatgagacggaggga 42544108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 21585524 - 21585622
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||| ||||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  21585524 aaaaaataattaatattgtattggaaagtgaaatgactcagttattttgggacacttttttattgaaaatgactcagttattatggaacggagagagta 21585622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 39365131 - 39365229
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||||||| ||| |||||||||||||  ||||||| |||||||||| | | ||||  |||||||||||||| ||||||||||||    
T  39365131 aaaaagtaattaatattgtattgaaaattgaaatggctcagttattttgggacacttttttttggtaaatggctcagttattatgggacggagggagta 39365229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 26134816 - 26134916
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||| |||||  ||||||| ||||||||||| ||||   ||||| ||||||||||||||||||||| | ||||||||||||| ||||| ||||||    
T  26134816 aaaaaagtagttaatgatgtattgaaaagtgaaatgactcacttattttagaacacttttttattgaaaatgagtcagttattatgggacggaaggagta 26134915  T
Q  101 a 101  Q
    |    
T  26134916 a 26134916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5245406 - 5245307
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||| |||||||||  ||||||| ||||||||||||||||   |||||||||||||||||||||||||||    ||||||||||| |||| ||||||||    
T  5245406 aaaaatgtaattaatcatgtattgaaaagtgaaatggctcacttattttggaacacttttttattgaaaatggtgcagttattatgaaacgaagggagta 5245307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 36317711 - 36317812
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaaca--cttttttattgaaaataactcagttattatggaacggagggag 98  Q
    ||||||||||||||||||||||||||||||||||||| ||| |  |||||| |||   |||||| |||||||| | ||| |||||||||||||||| |||    
T  36317711 aaaaaagtaattaatattgtattggaaagtgaaatgggtcaacttttttgggacaacatttttttttgaaaatgattcaattattatggaacggagagag 36317810  T
Q  99 ta 100  Q
    ||    
T  36317811 ta 36317812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 38600923 - 38601017
Alignment:
Q  6 agtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||| || |||||||| ||||   ||||| ||||| |||||| ||| |||| ||||||||||||||| ||||||||||||    
T  38600923 agtaattaatattgtattgaaaggtgaaatgactcaattattttagaacaatttttttttgcaaatgactcagttattatgggacggagggagta 38601017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 12744800 - 12744708
Alignment:
Q  8 taattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||| |||| ||||||||||||||||   ||||||| ||||||| || | ||||||  |||||||||||||| ||||||||||||    
T  12744800 taattaatattgcattgaaaagtgaaatggctcaaatattttgggacactttgttttagaaaatggctcagttattatgggacggagggagta 12744708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 36097777 - 36097868
Alignment:
Q  9 aattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||| |||| |||||||||||||||||  ||||||| ||||||| || ||| |||| ||||||||||||||  |||||| |||||    
T  36097777 aattaatattgcattgaaaagtgaaatggctcagatattttgggacactttgtttttgcaaatgactcagttattatgagacggagtgagta 36097868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 39866667 - 39866727
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    ||||||||||||||||||||| ||||||| ||||||||||   ||||||||||||||||||    
T  39866667 aaaaagtaattaatattgtataggaaagtaaaatggctcaattattttggaacactttttt 39866727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 32023214 - 32023312
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||||||||||||||| |||||  ||||| | ||  |||||| ||| || | ||||||||||||||| ||| ||||||||    
T  32023214 aaaaaaataattaatattgtattggaaagtgaaatgactcagttattttaggac-ttttttttttgcaattgactcagttattatgggacgaagggagta 32023312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41031566 - 41031471
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttatt-gaaaataactcagttattatggaacggagg 95  Q
    |||||||||||||||||||||||| ||||||||||| ||||   ||||||  |||||||||| || | |||| ||||||||||||| | |||||||    
T  41031566 aaaaaagtaattaatattgtattgaaaagtgaaatgactcaattattttgcgacactttttttttggtaaatgactcagttattataggacggagg 41031471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 43640678 - 43640783
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaac------acttttttattgaaaataactcagttattatggaacggag 94  Q
    |||||||||||||||||||||||| ||||||||||| |||||  ||||||| ||        |||||| ||| |||||||||||||||||||| || |||    
T  43640678 aaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgggaccttttttttttttttttgcaaataactcagttattatgggacagag 43640777  T
Q  95 ggagta 100  Q
    ||||||    
T  43640778 ggagta 43640783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 46194319 - 46194418
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| |||||||||||| |||    || ||| ||| | ||||  |||||||  ||||||| |||||| ||||||||||||    
T  46194319 aaaaaagtaattaatattgtattgaaaagtgaaatgggtcaatttttctgggacaatatttttctgaaaatggctcagttgttatgggacggagggagta 46194418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 30261616 - 30261714
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||| |||||||||| |||||||||||| |||    |||||| ||| | |||| ||| ||||  |||||||||||||| || |||||||||    
T  30261616 aaaaagtaattattattgtattgaaaagtgaaatgggtcaatttttttgggacaatatttttttgcaaatggctcagttattatgggacagagggagta 30261714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21296616 - 21296657
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  21296616 aaaaaagtaattaatattgtattgaaaagtgaaatgactcag 21296657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 46786094 - 46786155
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    |||||||||||||||||| ||||  |||||||||| ||||||  |||||| |||||||||||    
T  46786094 aaaaaagtaattaatattatattaaaaagtgaaatagctcagttattttgaaacactttttt 46786155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 48744219 - 48744126
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggag 94  Q
    |||||||||||||||||||||||  ||||| ||||| || ||  ||||||| ||  |||||| ||| ||||  |||||||||||||| ||||||    
T  48744219 aaaaaagtaattaatattgtattaaaaagtaaaatgacttagttattttgggactttttttttttgcaaatggctcagttattatgggacggag 48744126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 51164945 - 51164842
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac---ttttttattgaaaataactcagttattatggaacggagggag 98  Q
    ||||||||||||||||||||||| ||||||||||| |||    |||||  |||||   |||||| ||| ||||  || ||||||||||| ||||||||||    
T  51164945 aaaaagtaattaatattgtattgaaaagtgaaatgactcgattattttataacacttttttttttttgcaaatggctgagttattatgggacggagggag 51164846  T
Q  99 taat 102  Q
    ||||    
T  51164845 taat 51164842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 54122337 - 54122436
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||| || ||||| ||||||||||| || ||  ||||||| |||||||||| || ||||| ||| ||||||  ||| ||||||||||||    
T  54122337 aaaaaagtaattaat-ttatattgaaaagtgaaatgactaagttattttgggacactttttt-tttaaaatgacttagttatcgtgggacggagggagta 54122434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 1334907 - 1334987
Alignment:
Q  20 tattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||| ||||||||||| ||||   ||||| |||||  ||||| ||| |||| ||||||||||||||| ||||||||||||    
T  1334907 tattgaaaagtgaaatgactcaattattttagaacaacttttttttgcaaatgactcagttattatgggacggagggagta 1334987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 39329863 - 39329963
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||| | |||||||| |||||||||||  ||| |  |||| | ||| | |||| ||| |||| ||||| ||||||||| ||||||||||||    
T  39329863 aaaaaagtaattattgttgtattgaaaagtgaaatgagtcaacttttttaggacaatatttttttgcaaatgactcatttattatgggacggagggagta 39329962  T
Q  101 a 101  Q
    |    
T  39329963 a 39329963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36790986 - 36791021
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  36790986 aaaaaagtaattaatattgtattgaaaagtgaaatg 36791021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33994651 - 33994542
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| || |||||||||||||| ||||||||||| |||||  ||||| | ||| ||||||  || ||||  ||||||||||||   ||||||||||||    
T  33994651 aaaaaaatatttaatattgtattgaaaagtgaaatgactcagttatttttggaca-tttttttgtgcaaatggctcagttattatttgacggagggagta 33994553  T
Q  101 atgtctatcac 111  Q
    ||  |||||||    
T  33994552 ataactatcac 33994542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 54493902 - 54493853
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttgg 51  Q
    ||||||||||||||||||||| || |||||||||||||||||  |||||||    
T  54493902 aaaaaagtaattaatattgta-tgaaaagtgaaatggctcagttattttgg 54493853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1772225 - 1772266
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  1772225 aaaaaagtaattaatattgtattgaaaaatgaaatggttcag 1772266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2868568 - 2868527
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  2868568 aaaaaaataattaatattgtattgaaaagtgaaatggatcag 2868527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9017793 - 9017760
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9017793 aaaaaagtaattaatattgtattgaaaagtgaaa 9017760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54458423 - 54458484
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    |||||||||||||||||||||||| ||||| ||||  |||||  ||||||| ||| ||||||    
T  54458423 aaaaaagtaattaatattgtattgaaaagtaaaattactcagttattttgggacaatttttt 54458484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26479943 - 26479979
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  26479943 aaaaaagtaattaatattgtattgaaaagtaaaatgg 26479979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49003264 - 49003224
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctca 41  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  49003264 aaaaaagtaattaatattgtattgaaaagtaaaatgactca 49003224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4466268 - 4466368
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||   ||||||  ||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  4466268 aaaaaaataattaatattgtattggaaagtgaaatgactcaattattttgagacacttttttattgaaaatgacttagttattatggaacagagggagta 4466367  T
Q  101 a 101  Q
    |    
T  4466368 a 4466368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16040071 - 16039975
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggaggga 97  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||||  |||| ||||||||||||||| ||||||||||||||| | |||||||    
T  16040071 aaaaaagtaattaatattgtattggaaagtgaaatgactcagttattttaaaacatttttttattgaaaatgactcagttattatgggatggaggga 16039975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 11425983 - 11426082
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||| | |||||||||||||||||||  ||| | |||||||| ||||| ||||||    
T  11425983 aaaaaagtaattaatattgtattggaaagtgaaatgactcagttattttaggacacttttttattgaaaatggctccggtattatgggacggaaggagta 11426082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27698806 - 27698707
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||   ||||| | |||||||||| ||| |||| ||||| |||||||||||||||| |||||    
T  27698806 aaaaaagtaattaatattgtattgaaaagtgaaatgactcaattattttaggacactttttttttgtaaatgactcaattattatggaacggagtgagta 27698707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 36467310 - 36467391
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttatta 84  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||| ||| |||| ||||||||||||    
T  36467310 aaaaagtaattaatattgtattgaaaagtgaaatgactcagtcattttgaaacactttttt-ttgcaaatgactcagttatta 36467391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 8773232 - 8773141
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacgg 92  Q
    |||||||||||||||||| ||||| ||| |||||| ||||||  ||||||| |||||||||| ||| |||| ||||||||||||||| ||||    
T  8773232 aaaaaagtaattaatattctattgaaaaatgaaatagctcagttattttgggacactttttttttgcaaatgactcagttattatgggacgg 8773141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32347938 - 32347838
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||  ||||||| |||||||||| |||||   || |||| ||| |||||||||||||||  || ||||||||||| ||||||||||||    
T  32347938 aaaaaagtaattaatgatgtattgaaaagtgaaatagctcacttatattgggacaattttttattgaaaatggcttagttattatgggacggagggagta 32347839  T
Q  101 a 101  Q
    |    
T  32347838 a 32347838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 52830527 - 52830625
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||  |||||  |||| |||||| ||  ||||||||||||||||||  || ||||||||||    
T  52830527 aaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttaaaaca-tttttttttacaaataactcagttattataaaatggagggagta 52830625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8327711 - 8327641
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaat 71  Q
    |||||||||||||||  ||||||| ||||||||||||||||   ||||||| |||||||||||||||||||    
T  8327711 aaaaaagtaattaatgatgtattgaaaagtgaaatggctcatttattttgggacacttttttattgaaaat 8327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 28839333 - 28839247
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactt-ttttattgaaaataactcagttattatgg 87  Q
    |||||||||||||   ||||||| ||||||||||| ||||   |||||||||||||| ||||||||||||| |||||||||||||||    
T  28839333 aaaaagtaattaaatatgtattgaaaagtgaaatgactcacttattttggaacactttttttattgaaaatgactcagttattatgg 28839247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 2886165 - 2886066
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| |||||||||| | |||    || ||| ||| | |||| ||| |||| ||||||||||||||| ||||||||||||    
T  2886165 aaaaaagtaattaatattgtattgaaaagtgaaattgatcaatttttctgggacaatatttttttgcaaatgactcagttattatgggacggagggagta 2886066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 26583719 - 26583626
Alignment:
Q  4 aaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggaggga 97  Q
    ||||||||||||||||||||| |||||||||||| |||    |||||  ||| | |||| ||| ||||| |||||||||||||| |||||||||    
T  26583719 aaagtaattaatattgtattgaaaagtgaaatgggtcaatttttttgagacaatatttttttgcaaatagctcagttattatgggacggaggga 26583626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 19533033 - 19533125
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacgga 93  Q
    |||||||||||||||||||||||| ||||| ||||| |||||  ||||||| |   |||||| ||| |||| |||||||||||| || |||||    
T  19533033 aaaaaagtaattaatattgtattgaaaagtaaaatgactcagttattttgggattttttttttttgcaaatgactcagttattacgggacgga 19533125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 45889362 - 45889464
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt---attgaaaataactcagttattatggaacggaggga 97  Q
    |||||||||||||||   |||||| ||||||||||| ||||   ||||||| ||||||||||   ||| ||||| ||||||||||||||| || ||||||    
T  45889362 aaaaaagtaattaatgacgtattgaaaagtgaaatgactcacttattttgggacactttttttttattaaaaatgactcagttattatgggaccgaggga 45889461  T
Q  98 gta 100  Q
    |||    
T  45889462 gta 45889464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 17724835 - 17724913
Alignment:
Q  8 taattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatg 86  Q
    ||||||||||||||||| ||| ||||||| ||||   ||||||  |||||||||||||  |||| ||||||||||||||    
T  17724835 taattaatattgtattgaaaaatgaaatgactcaattattttgagacacttttttattagaaatgactcagttattatg 17724913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 29225747 - 29225661
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatgg 87  Q
    ||||||||||||| |||||||||| |||||||||||| |||  | |||||| ||| | |||| ||  |||| |||||||||||||||    
T  29225747 aaaaaagtaattattattgtattgaaaagtgaaatgggtcaatctttttgggacaatatttttttacaaatgactcagttattatgg 29225661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36784308 - 36784254
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaaca 55  Q
    |||||||||||||||||||||||| ||||||||||| |||||  |||||| ||||    
T  36784308 aaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgaaaca 36784254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 46536334 - 46536236
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttat-tgaaaataactcagttattatggaacggagggag 98  Q
    ||||| |||||||||||||||||| ||||||||||| |||||  ||||||  |||||||||| | || |||| | ||||||||||| | ||| ||||||    
T  46536334 aaaaatgtaattaatattgtattgaaaagtgaaatgactcagttattttgagacacttttttgtgtgcaaatgaatcagttattataggacgaagggag 46536236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 7787670 - 7787568
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttat----tgaaaataactcagttattatggaacggaggga 97  Q
    ||||||||||||||||||||| | ||| |||||||||||||  |||||   ||| |||||| |    || |||| ||||||||||||||| |||||||||    
T  7787670 aaaaagtaattaatattgtatcgaaaaatgaaatggctcagttatttttagacattttttttttgtgtgcaaatgactcagttattatgggacggaggga 7787571  T
Q  98 gta 100  Q
    |||    
T  7787570 gta 7787568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10370301 - 10370342
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  10370301 aaaaaaataattaatattgtattggaaagtgaaatagctcag 10370342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17342822 - 17342721
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||| ||||||||||||||||||| ||||||||||  |||||  ||||||  ||||||| || ||| |||| || ||||||||||   ||||||| ||||    
T  17342822 aaaatagtaattaatattgtattgaaaagtgaaataactcagttattttgagacactttatttttgcaaattacgcagttattataagacggaggaagta 17342723  T
Q  101 at 102  Q
    ||    
T  17342722 at 17342721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 46496012 - 46495927
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatg 86  Q
    |||||| ||||||||  ||||||| ||| ||||||| ||||   ||||||  ||||||||||||||||||| | ||||||||||||    
T  46496012 aaaaaaataattaatgatgtattgaaaaatgaaatgactcacttattttgagacacttttttattgaaaatgattcagttattatg 46495927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 48242704 - 48242796
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggag 94  Q
    |||||||||||||||||||||||| ||||||||||| || ||  ||||  || || |||||| ||| ||||  ||| |||||||||||||||||    
T  48242704 aaaaaagtaattaatattgtattgaaaagtgaaatgactaagttatttcagagcaatttttt-ttgcaaatggctcggttattatggaacggag 48242796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 50333929 - 50333828
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||| || |||||||||||||||||| |||    | |||  ||| | |||| ||| |||| |||||||||||||||  |||||||||||    
T  50333929 aaaaaagtaattaatgttatattggaaagtgaaatggatcaagattcttgcgacaatatttttttgcaaatgactcagttattatgggtcggagggagta 50333830  T
Q  101 at 102  Q
    ||    
T  50333829 at 50333828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 51848810 - 51848879
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaa 70  Q
    |||||||||||||||  ||||||| ||||||||||| ||||   ||||||| |||| |||||||||||||    
T  51848810 aaaaaagtaattaatgatgtattgaaaagtgaaatgtctcacttattttgggacacatttttattgaaaa 51848879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29225521 - 29225557
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  29225521 aaaaaagtaattaatattgtattggaaaatgaaatgg 29225557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29756258 - 29756294
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29756258 aaaaaagtaattaatattgtattgaaaagtgaaatgg 29756294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 2219562 - 2219597
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2219562 aaaaagtaattaatattgtattgaaaagtgaaatgg 2219597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6784997 - 6784962
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6784997 aaaaaagtaattaatattgtattgaaaagtgaaatg 6784962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 11324183 - 11324140
Alignment:
Q  57 ttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||| |||| |||||||| |||||||||||||    
T  11324183 ttttttattgaaaatagctcaattattatgaaacggagggagta 11324140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 11482204 - 11482161
Alignment:
Q  57 ttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||| |||| |||||||| |||||||||||||    
T  11482204 ttttttattgaaaatagctcaattattatgaaacggagggagta 11482161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 43895840 - 43895801
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctca 41  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  43895840 aaaaagtaattaatattgtattgaaaagtgaaatgactca 43895801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3555669 - 3555762
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagg 95  Q
    |||||||||||||||  |||| || ||| ||||||  ||||   ||||||| ||||||||| ||| ||||| ||||||||||||||| |||||||    
T  3555669 aaaaaagtaattaatgatgtaatgaaaaatgaaataactcacttattttgggacacttttt-attaaaaatgactcagttattatgggacggagg 3555762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15290484 - 15290450
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  15290484 aaaaaagtaattaatattgtattgaaaagtgaaat 15290450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 34877204 - 34877262
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttt 60  Q
    ||||||||||||||||||||||| ||||| |||||  ||||  ||||| ||||||||||    
T  34877204 aaaaagtaattaatattgtattgaaaagtaaaatgattcagttattttagaacactttt 34877262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 14358121 - 14358154
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaat 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  14358121 aaaaagtaattaatattgtattgaaaagtgaaat 14358154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 7785388 - 7785428
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  7785388 aaaaaataattaatattgtattgaaaagtgaaatgactcag 7785428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16451625 - 16451589
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  16451625 aaaaaagtaattaatgttgtattgaaaagtgaaatgg 16451589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16460778 - 16460742
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  16460778 aaaaaagtaattaatgttgtattgaaaagtgaaatgg 16460742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 51049503 - 51049463
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctca 41  Q
    |||||||||||||||||||||||  |||||||||| |||||    
T  51049503 aaaaaagtaattaatattgtattaaaaagtgaaatagctca 51049463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 2846789 - 2846888
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||  ||||||| ||||||||||| ||||   ||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  2846789 aaaaaagtaattaatgatgtattgaaaagtgaaatgactcacttattttgggacacttttttattgaaaatgactcagttattatgggacggagggagta 2846888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 33774155 - 33774253
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||| ||||||||||||||||| ||||||||||| |||||  |||||||||||||||||| ||| |||| ||||||||||| ||  ||||||||||||    
T  33774155 aaaaaataattaatattgtattgaaaagtgaaatgactcagttattttggaacactttttttttgtaaatgactcagttattgtgagacggagggagta 33774253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7425992 - 7426089
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||||  ||| ||||  |||||||||| ||| ||||||||||||    
T  7425992 aaaaaagtaattaatattgtattgaaaagtgaaatggctcagttattttgggacacttttt--ttgcaaatggctcagttattgtgggacggagggagta 7426089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29257541 - 29257441
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||  ||||||| |||||||||| |||||   ||||||| ||||||||||||||||||| ||||||||||||||  ||||| ||||||    
T  29257541 aaaaaagtaattaatgatgtattgaaaagtgaaatagctcacttattttgggacacttttttattgaaaatgactcagttattatgagacggatggagta 29257442  T
Q  101 a 101  Q
    |    
T  29257441 a 29257441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5724820 - 5724921
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttt--ttattgaaaataactcagttattatggaacggagggag 98  Q
    |||||||| ||||||||||||||| ||||||||||||||||   ||||||| ||| ||||  || ||| |||| ||||||||||||||||||||||||||    
T  5724820 aaaaaagtgattaatattgtattgaaaagtgaaatggctcacttattttgggacattttttgtttttgtaaatgactcagttattatggaacggagggag 5724919  T
Q  99 ta 100  Q
    ||    
T  5724920 ta 5724921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33584557 - 33584457
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt-attgaaaataactcagttattatggaacggagggagt 99  Q
    |||||||||||||||  ||||||  |||||||||||||||||  ||||||  |||||||||| |||||||||  |||||||||||||| |||||||||||    
T  33584557 aaaaaagtaattaatgatgtattcaaaagtgaaatggctcagttattttgagacactttttttattgaaaatgcctcagttattatgggacggagggagt 33584458  T
Q  100 a 100  Q
    |    
T  33584457 a 33584457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11616555 - 11616450
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac------ttttttattgaaaataactcagttattatggaacggag 94  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||||| ||||      |||||| ||| ||||  |||||||||||||| | ||||    
T  11616555 aaaaaagtaattaatattgtattgaaaagtgaaatggctcagttattttgggacacttgttttttttttttgcaaatggctcagttattatgggatggag 11616456  T
Q  95 ggagta 100  Q
    ||||||    
T  11616455 ggagta 11616450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 46288544 - 46288640
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggag 98  Q
    |||||| ||||||||||| ||||| |||||||||||||||||  ||||||| ||| |||||| ||  |||| |||| |||||| ||||||||||||||    
T  46288544 aaaaaattaattaatattatattgaaaagtgaaatggctcagttattttgggaca-tttttttttacaaatgactcggttattgtggaacggagggag 46288640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32775977 - 32775877
Alignment:
Q  1 aaaaaagtaattaatatt-gtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagt 99  Q
    |||||||||||||||||| ||||||||||||||||||| |||    |||||| ||| | |||| ||| ||||  |||||||||||||| |||||||||||    
T  32775977 aaaaaagtaattaatatttgtattggaaagtgaaatgggtcaatttttttgggacaatatttttttgcaaatgcctcagttattatgggacggagggagt 32775878  T
Q  100 a 100  Q
    |    
T  32775877 a 32775877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 48981369 - 48981273
Alignment:
Q  5 aagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagtaa 101  Q
    |||||||||||||||||||| ||||||||||| |||||  ||||||| ||||||| || ||| |||   |||  ||||||||| |||||||||||||    
T  48981369 aagtaattaatattgtattgaaaagtgaaatgactcagttattttgggacactttatttttgcaaacggctcgattattatgggacggagggagtaa 48981273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 31581556 - 31581663
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac------ttttttattgaaaataactcagttattatggaacggag 94  Q
    |||||||||||||||||||||||| ||||||||||| |||||  ||||| | | ||      |||||| ||| |||| ||||||||||||||| ||||||    
T  31581556 aaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttaggatactttttttttttttttgcaaatgactcagttattatgggacggag 31581655  T
Q  95 ggagtaat 102  Q
     |||||||    
T  31581656 agagtaat 31581663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 12308373 - 12308275
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||| ||||||| |||||  ||||||  ||| |||||| ||  |||| |||| |||||| ||| ||||||||||||    
T  12308373 aaaaaagtaattaatattgtattgaaaattgaaatgactcagttattttgagaca-ttttttttttcaaatgactcggttattgtgggacggagggagta 12308275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 30463010 - 30462911
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||| ||||||||||||| | ||||||||||| ||||   |||||   ||| |||||| ||| |||| ||||| ||||||||| ||||||||||||    
T  30463010 aaaaaagtcattaatattgtatggaaaagtgaaatgactcaattattttatgacattttttttttgcaaatgactcaattattatgggacggagggagta 30462911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 37496510 - 37496609
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||| |||| ||| |||||||||||| |||    |||||| | | | |||| ||| |||| ||||||||||||||| ||||||||||||    
T  37496510 aaaaaagtaattaatgttgtgttgaaaagtgaaatgggtcaatttttttgggataatatttttttgcaaatgactcagttattatgggacggagggagta 37496609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 45890950 - 45891045
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggaggga 97  Q
    ||||| |||||| |||||||||| |||||||||| ||||||  ||||||  ||||||| || |  ||||| ||||||||||||| | |||||||||    
T  45890950 aaaaaataattattattgtattgaaaagtgaaattgctcagttattttgtgacactttattttaaaaaatgactcagttattataggacggaggga 45891045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 39693785 - 39693682
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac----ttttttattgaaaataactcagttattatggaacggaggg 96  Q
    |||||||||||||||  ||||||| ||||||||||| ||||   ||||||| ||||    ||||||||| ||||| ||||||||| ||||| || |||||    
T  39693785 aaaaaagtaattaatgatgtattgaaaagtgaaatgactcacttattttgggacacttttttttttattaaaaatgactcagttactatgggacagaggg 39693686  T
Q  97 agta 100  Q
    ||||    
T  39693685 agta 39693682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 44604597 - 44604675
Alignment:
Q  8 taattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatg 86  Q
    ||||||||  ||||||| ||||||||||||||||   ||||||| |||||||| ||||||||||   ||||||||||||    
T  44604597 taattaatgatgtattgaaaagtgaaatggctcacttattttgggacacttttatattgaaaatggttcagttattatg 44604675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34963924 - 34963985
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    |||||||||||||||| ||||||| ||||||||||| |||||  ||||||| ||| ||||||    
T  34963924 aaaaaagtaattaatactgtattgaaaagtgaaatgactcagttattttgggacattttttt 34963985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10355848 - 10355884
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  10355848 aaaaaagtaattaatattgtattggaaagtaaaatgg 10355884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 21387719 - 21387816
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||| ||||| ||||||||||| || ||| |||||  || |||||||| ||  ||||  |||||||||||||| ||| | ||||||    
T  21387719 aaaaaagtaattaatattatattgaaaagtgaaatgacttagctatttt--aaaactttttttttacaaatgcctcagttattatgggacgaaaggagta 21387816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 29434694 - 29434754
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    ||||| |||||||||||||||||||||| |||||| |||||  ||||||  ||||||||||    
T  29434694 aaaaaataattaatattgtattggaaagcgaaatgactcagttattttgagacactttttt 29434754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 40038223 - 40038307
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattat 85  Q
    |||||| ||||||||  | ||||| ||||||||||| ||||   |||| |||||| ||||||| ||||||| |||||||||||||    
T  40038223 aaaaaaataattaatgatatattgaaaagtgaaatgactcacttatttcggaacatttttttaatgaaaatgactcagttattat 40038307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 46095561 - 46095658
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||| ||||||||||| ||| |  ||||||||  | |||||| ||| |||  ||| ||||||||||| |||||| |||||    
T  46095561 aaaaaattaattaatattgtattgaaaagtgaaatgactcggttattttgga--attttttttttgcaaacgacttagttattatgggacggagagagta 46095658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 37264306 - 37264271
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37264306 aaaaagtaattaatattgtattgaaaagtgaaatgg 37264271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40023839 - 40023874
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  40023839 aaaaaagtaattaatattgtattgaaaagtgaaatg 40023874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 32972388 - 32972418
Alignment:
Q  6 agtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||||||||||    
T  32972388 agtaattaatattgtattggaaagtgaaatg 32972418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40590938 - 40590988
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttgg 51  Q
    |||||||||||||||||||||||  ||||||||||| |||||  |||||||    
T  40590938 aaaaaagtaattaatattgtatttaaaagtgaaatgactcagttattttgg 40590988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 23703910 - 23703817
Alignment:
Q  1 aaaaaagtaattaata-ttgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacgga 93  Q
    |||||||||||||||| |||||||||||||| |||||  ||||  |||||   | |||||||| ||  |||| |||||||||||||| ||||||    
T  23703910 aaaaaagtaattaataattgtattggaaagtaaaatgattcagttattttatgatactttttttttacaaatgactcagttattatgaaacgga 23703817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37157165 - 37157124
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    |||||| ||||||||||||||||| |||||||||| ||||||    
T  37157165 aaaaaaataattaatattgtattgaaaagtgaaatagctcag 37157124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2849249 - 2849213
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  2849249 aaaaaagtaattaatgttgtattgaaaagtgaaatgg 2849213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30659593 - 30659629
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  30659593 aaaaaagtaattaatgttgtattgaaaagtgaaatgg 30659629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47453998 - 47453958
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctca 41  Q
    |||||| | ||||||||||||||| ||||||||||||||||    
T  47453998 aaaaaaatgattaatattgtattgaaaagtgaaatggctca 47453958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 21587270 - 21587171
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||| |||| |||||||||||||||||  ||||||| ||||||| || |||||||| ||||||||||||||  |||||| |||||    
T  21587270 aaaaaagtaattaatattgcattgaaaagtgaaatggctcagatattttgggacactttgtttttgaaaatgactcagttattatgagacggagtgagta 21587171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 38252551 - 38252650
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||||||   |||||||||||| ||||  ||||||| |||||||||| ||| |||| ||||||||||||||| ||||||||||||    
T  38252551 aaaaaagtaattaatattgtatcaaaaagtgaaatggttcagttattttgggacactttttttttgcaaatgactcagttattatgggacggagggagta 38252650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 2119703 - 2119611
Alignment:
Q  8 taattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||| || ||||||| ||||||  ||||||| ||||||||| |||  |||| ||||||||||||||||||||||||||||    
T  2119703 taattaatattgtattgaaatgtgaaatagctcagttattttgggacactttttaattacaaatgactcagttattatggaacggagggagta 2119611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5392042 - 5391943
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||  ||||||  |||||||||| ||| ||||  ||||  |||||||||||||||||||||    
T  5392042 aaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgagacactttttttttgcaaatggctcaaatattatggaacggagggagta 5391943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14689954 - 14689855
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| |||||||||||| |||    || ||| ||| | |||| ||| |||| ||||||||||||||| ||||||||||||    
T  14689954 aaaaaagtaattaatattgtattgaaaagtgaaatgggtcaatttttctgggacaatatttttttgcaaatgactcagttattatgggacggagggagta 14689855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28802761 - 28802662
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||| |||||  ||||||| |||||||||||||| |   ||||||  ||||||||||||||||||| ||||||||||||||| ||| ||| ||||    
T  28802761 aaaaaagtagttaatgatgtattgaaaagtgaaatggctgacttattttgtgacacttttttattgaaaatgactcagttattatgggacgaaggaagta 28802662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 32967390 - 32967489
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||| ||||| ||||||| ||||||||||| ||  |  |||||| ||||||||||| ||| |||| ||||||||||||||| ||||| ||||||    
T  32967390 aaaaaagtaactaatactgtattgaaaagtgaaatgactaggttattttgaaacactttttttttgcaaatgactcagttattatgggacggatggagta 32967489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 44790536 - 44790634
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||| ||||||||||  ||||||| |||||||||||||| |   ||||||| |||||||||| ||| ||||| |||||||||||||| ||||||||||||    
T  44790536 aaaatagtaattaatgatgtattgaaaagtgaaatggcttaattattttgggacactttttt-ttgcaaatagctcagttattatgggacggagggagta 44790634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 31410722 - 31410822
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagtaa 101  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||| | ||| |||| | || ||| ||  ||||||||||||| | ||| |||||||    
T  31410722 aaaaagtaattaatattgtattggaaagtgaaatgactcagttattttagtacatttttatttttaaattagttcagttattatgggatggatggagtaa 31410821  T
Q  102 t 102  Q
    |    
T  31410822 t 31410822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 44615480 - 44615578
Alignment:
Q  3 aaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaac-acttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||| ||||   |||||| ||| || | |||| |||||||||  ||||||||||||    
T  44615480 aaaagtaattaatattgtattggaaagtgaaatgactcagttattttagaacttttttttttttgcaattgactcggttattatgagacggagggagta 44615578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 12653681 - 12653578
Alignment:
Q  2 aaaaagtaattaa-tattgtattggaaagtgaaatggctcagccattttggaacacttttttattga--aaataactcagttattatggaacggagggag 98  Q
    ||||||||||||| |||||||||| ||||||||||| || ||  |||||| |||||||||||  ||   |||| ||||||||||||||| |||||| |||    
T  12653681 aaaaagtaattaaatattgtattgaaaagtgaaatgacttagttattttgaaacactttttttgtgtgcaaatgactcagttattatgggacggagagag 12653582  T
Q  99 taat 102  Q
    ||||    
T  12653581 taat 12653578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 14748820 - 14748920
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||||| |||||| |||    || ||||||| | |||| ||| ||||  ||| ||||||| |||||||||||||||    
T  14748820 aaaaaagtaattaatattgtattgaaaagtaaaatggatcaatttttctggaacaatatttttttgcaaatggctcggttattacggaacggagggagta 14748919  T
Q  101 a 101  Q
    |    
T  14748920 a 14748920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29615792 - 29615690
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactt---ttttattgaaaataactcagttattatggaacggaggga 97  Q
    |||||| ||||||||||||||||| ||||| |||||  ||||  ||||||||||||||   |||| ||| |||| ||||| ||||||||| ||||||| |    
T  29615792 aaaaaaataattaatattgtattgaaaagtaaaatgattcagttattttggaacacttttttttttttgcaaatgactcatttattatgggacggaggaa 29615693  T
Q  98 gta 100  Q
    |||    
T  29615692 gta 29615690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34287192 - 34287292
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||| |||||| |||||||| ||||||||||| |||||  |||||||||||| ||||| | | ||||   ||| ||||||||| |||||||| |||    
T  34287192 aaaaaagtgattaatgttgtattgaaaagtgaaatgactcagttattttggaacacatttttttcgtaaatggttcaattattatgggacggagggtgta 34287291  T
Q  101 a 101  Q
    |    
T  34287292 a 34287292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 42558694 - 42558778
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattat 85  Q
    |||||| ||||||||  ||||||| ||||||||||| ||||   ||||||||  ||||||||||||||||| ||||| |||||||    
T  42558694 aaaaaaataattaatgatgtattgaaaagtgaaatgactcacttattttggagaacttttttattgaaaatgactcaattattat 42558778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31132723 - 31132664
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttt 60  Q
    |||||||||||||||||||||||| ||| ||||||| ||| |  ||||||||||||||||    
T  31132723 aaaaaagtaattaatattgtattgaaaaatgaaatgactccgttattttggaacactttt 31132664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 139026 - 138929
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||| ||||||||||||||||| ||||||||||| ||| |  ||||||| ||| |||||| | | ||||  |||||||||||||| ||||| ||||||    
T  139026 aaaaaataattaatattgtattgaaaagtgaaatgactcggttattttgggaca-ttttttttcgcaaatggctcagttattatgggacggatggagta 138929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33191022 - 33191072
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttgg 51  Q
    |||||||||||||||||||||||| ||||||||||| |||||  |||||||    
T  33191022 aaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgg 33191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45421053 - 45421154
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| |||||||||||| | |     | ||| ||| | |||| ||| ||||  ||||||| |||||||||||||||||||    
T  45421053 aaaaaagtaattaatattgtattgaaaagtgaaatgggttaatttatctgggacaatatttttttgtaaatggctcagttgttatggaacggagggagta 45421152  T
Q  101 at 102  Q
    ||    
T  45421153 at 45421154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 39171537 - 39171450
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacg 91  Q
    |||||||||||||||||| ||||| ||||| ||||| |||||  ||||||| ||| |||||| |   |||| ||||| |||||||||||||    
T  39171537 aaaaaagtaattaatattatattgaaaagttaaatgactcagttattttgggacattttttttt---aaatgactcaattattatggaacg 39171450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 886561 - 886596
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  886561 aaaaaagtaattaatattgtattgaaaagtgaaatg 886596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 2195462 - 2195363
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||| | |||||||| |||||||||||| |||    |||||| |||   |||| ||| |||| ||||||||||||||| |||||| |||||    
T  2195462 aaaaaagtaattattgttgtattgaaaagtgaaatgggtcaatttttttgggacaacatttttttgcaaatgactcagttattatgggacggagagagta 2195363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 2797033 - 2796934
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||| |||||||||||  |||    |||| ||||| | |||| ||| ||||  |||| ||||||||| ||||||||||||    
T  2797033 aaaaaaataattaatattgtattgaaaagtgaaatgagtcaagtttttttgaacaatatttttttgcaaatggctcacttattatgggacggagggagta 2796934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32231833 - 32231868
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  32231833 aaaaaagtaattaatattgtattgaaaagtgaaatg 32231868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 34133071 - 34132976
Alignment:
Q  5 aagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||  |||||| |||| |||||  ||||||| |||| ||||| ||| ||||   ||||||||| | | ||||||||||||    
T  34133071 aagtaattaatattgtattaaaaagtgtaatgactcagttattttgggacacattttttttgtaaatggttcagttattttaggacggagggagta 34132976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41726515 - 41726480
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  41726515 aaaaaagtaattaatattgtattgaaaagtgaaatg 41726480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32241537 - 32241571
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  32241537 aaaaaagtaattaatattgtattgaaaagtgaaat 32241571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 45197603 - 45197569
Alignment:
Q  3 aaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  45197603 aaaagtaattaatattgtattgaaaagtgaaatgg 45197569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 5962587 - 5962648
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtg-aaatggctcagccattttggaacactttttt 62  Q
    ||||||||||||||| |||||||||||||| ||||| |||||  ||||| | ||||||||||    
T  5962587 aaaaagtaattaataatgtattggaaagtgaaaatgactcagttattttaggacactttttt 5962648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8566519 - 8566555
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  8566519 aaaaaaataattaatattgtattgaaaagtgaaatgg 8566555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 8618120 - 8618088
Alignment:
Q  3 aaaagtaattaatattgtattggaaagtgaaat 35  Q
    ||||||||||||||| |||||||||||||||||    
T  8618120 aaaagtaattaatatagtattggaaagtgaaat 8618088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9734471 - 9734507
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  9734471 aaaaaagtaattaatattgtattaaaaagtgaaatgg 9734507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22325068 - 22325108
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctca 41  Q
    |||||| ||||||||||||||||| ||||||||||| ||||    
T  22325068 aaaaaaataattaatattgtattgaaaagtgaaatgactca 22325108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 29730982 - 29731022
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  29730982 aaaaaataattaatattgtattgaaaagtgaaatgactcag 29731022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37459344 - 37459308
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  37459344 aaaaaagtaattaatattgtattaaaaagtgaaatgg 37459308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33109367 - 33109268
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| |||||| |||||||||| ||||| |||||||||||   ||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||    
T  33109367 aaaaaaataattagtattgtattgaaaagtaaaatggctcagttgttttggaacactttttttttgcaaatagctcagttattatgggacggagggagta 33109268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 15081417 - 15081324
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggag 94  Q
    |||||||||||||||||||||||| |||||||||| | ||||  ||||||| |||||||||| | | | || ||||||||||||||| ||||||    
T  15081417 aaaaaagtaattaatattgtattgaaaagtgaaattgttcagttattttgggacacttttttttcgcagatgactcagttattatgggacggag 15081324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 30064062 - 30064160
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||| | ||| |||||| ||| || | ||||| ||||||||| ||||| ||||||    
T  30064062 aaaaaagtaattaatattgtattggaaagtgaaatgactcagttattttaggaca-tttttttttgcaattgactcaattattatgggacggaaggagta 30064160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 7359228 - 7359138
Alignment:
Q  10 attaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||| |||||||||||| ||||  ||||||| ||| |||||| ||| ||||  |||| ||||| ||||||||||| ||||    
T  7359228 attaatattgtattgaaaagtgaaatggttcagttattttgggacattttttttttgcaaatggctcatttattgtggaacggaggaagta 7359138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 33921582 - 33921681
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||| |||||||||||||||| |||    || ||| ||| | |||| || |||||  ||||||||||| || ||||||||||||    
T  33921582 aaaaaagtaattaatattgttttggaaagtgaaatgggtcaatttttctgggacaatatttttttaaaaatggctcagttattacgggacggagggagta 33921681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3604713 - 3604813
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattga-aaataactcagttattatggaacggagggagt 99  Q
    |||||| ||||||||||||||||| ||||||||||| |||||  ||||| | ||| ||||||||| | ||||  ||| |||||| ||| |||||||||||    
T  3604713 aaaaaaataattaatattgtattgaaaagtgaaatgactcagttattttaggaca-ttttttatttacaaatggctctgttattgtgggacggagggagt 3604811  T
Q  100 aa 101  Q
    ||    
T  3604812 aa 3604813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9755259 - 9755295
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  9755259 aaaaaagtaattaatattgtattgaaaagtgaaatgg 9755295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4552896 - 4552861
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4552896 aaaaaagtaattaatattgtattgaaaagtgaaatg 4552861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2310401 - 2310435
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  2310401 aaaaaagtaattaatattgtattgaaaagtgaaat 2310435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20027588 - 20027554
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  20027588 aaaaaagtaattaatattgtatttgaaagtgaaat 20027554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31723488 - 31723454
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  31723488 aaaaaagtaattaatattgtattgaaaagtgaaat 31723454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 34915980 - 34916025
Alignment:
Q  57 ttttttattgaaaataactcagttattatggaacggagggagtaat 102  Q
    |||||| ||| |||| ||||||||||||||| ||||||||||||||    
T  34915980 tttttttttgcaaatgactcagttattatgggacggagggagtaat 34916025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8232423 - 8232459
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  8232423 aaaaaagtaattaatgttgtattgaaaagtgaaatgg 8232459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34441886 - 34441850
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  34441886 aaaaaagtaattaatgttgtattgaaaagtgaaatgg 34441850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5357931 - 5358030
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||| ||||||||||||||||||| | |||  ||||||| ||||||||||||| |||||  |||||||||||||| ||||| ||||||    
T  5357931 aaaaaagtaattaatactgtattggaaagtgaaatgacacagttattttgggacacttttttattaaaaatgtctcagttattatgggacggacggagta 5358030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6610829 - 6610730
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||  ||||||||||| |||||  ||||||| ||  |||||| |||||||| ||||||||||||||| ||||||||||||    
T  6610829 aaaaaagtaattaatattgtatttaaaagtgaaatgactcagttattttgggactttttttttttgaaaatgactcagttattatgggacggagggagta 6610730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 3725173 - 3725082
Alignment:
Q  9 aattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||| ||||||||||| |||||  ||||| | |||||||||||||| |||| | ||||||||||||| ||||||||||||    
T  3725173 aattaatattgtattgaaaagtgaaatgactcagttattttaggacacttttttattgcaaatgattcagttattatgggacggagggagta 3725082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 11099592 - 11099691
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaaca-cttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||| |||  |||||| ||| || | ||||||||||||| ||||||||||||||    
T  11099592 aaaaagtaattaatattgtattggaaagtgaaatgactcagttattttgggacatttttttttttgcaattgactcagttattatagaacggagggagta 11099691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 39060528 - 39060628
Alignment:
Q  3 aaaagtaattaatattgtattggaaa-gtgaaatggctcagccattttggaacactttt--ttattgaaaataactcagttattatggaacggagggagt 99  Q
    ||||||||||||||||||||| |||| ||||||| ||||||  |||||| |||||||||  ||||||||||| ||||| ||||||||| |||||||||||    
T  39060528 aaaagtaattaatattgtatttgaaaagtgaaatagctcagttattttgaaacacttttttttattgaaaatgactcaattattatgggacggagggagt 39060627  T
Q  100 a 100  Q
    |    
T  39060628 a 39060628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 42575752 - 42575853
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |  ||||||| |||||||| | ||  ||||  |||||||||| ||| ||||||||||||    
T  42575752 aaaaaagtaattaatattgtattgaaaagtgaaatggctcggttattttgggacacttttcttttacaaatggctcagttattgtgggacggagggagta 42575851  T
Q  101 at 102  Q
    ||    
T  42575852 at 42575853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33012348 - 33012249
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||| |||| |||||||||||||||||  ||||||| | ||||| || ||| |||| |||| |||||||||| |||||| |||||    
T  33012348 aaaaaagtaattaatattgcattgaaaagtgaaatggctcagatattttgggatactttgtttttgcaaatgactcggttattatgggacggagtgagta 33012249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 35334640 - 35334741
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttt--ttattgaaaataactcagttattatggaacggagggag 98  Q
    |||||| ||||||||  ||||||| ||||||||||||||||   ||||||| ||||||||  ||||||||||| ||||||||||||||| |||||| |||    
T  35334640 aaaaaaataattaatgatgtattgaaaagtgaaatggctcacttattttgggacacttttttttattgaaaatgactcagttattatgggacggagagag 35334739  T
Q  99 ta 100  Q
    ||    
T  35334740 ta 35334741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 39008123 - 39008023
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||| ||||||||||| || ||  ||||| | ||| |||||| ||| |||||||||||||||| ||| ||||||||||||    
T  39008123 aaaaaaataattaatattgtattgaaaagtgaaatgacttagttattttaggacattttttt-ttgcaaataactcagttattgtgggacggagggagta 39008025  T
Q  101 at 102  Q
    ||    
T  39008024 at 39008023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4044590 - 4044690
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttt-tattgaaaataactcagttattatggaacggagggagt 99  Q
    |||||||||||||||||||||||| |||||||||||  |||   ||||||| ||| ||||| | ||| |||| ||||||||||||||| |||||||||||    
T  4044590 aaaaaagtaattaatattgtattgaaaagtgaaatgattcaattattttgggacattttttattttgcaaatgactcagttattatgggacggagggagt 4044689  T
Q  100 a 100  Q
    |    
T  4044690 a 4044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30437855 - 30437942
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaa 89  Q
    |||||||||||||||||||||||  ||||||||||| |||||   |||||  | || ||||||||||||||||||||||||||||||||    
T  30437855 aaaaaagtaattaatattgtatttaaaagtgaaatgactcagttgttttgagatac-tttttattgaaaataactcagttattatggaa 30437942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8369811 - 8369910
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||| ||||||||||||||||| ||| |||||||||||||  ||||||| |||||||||  ||| ||||  ||||| |||| ||| ||||||||||||    
T  8369811 aaaaaaataattaatattgtattgaaaaatgaaatggctcagttattttgggacactttttatttgcaaatggctcagctattgtgggacggagggagta 8369910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 35646203 - 35646303
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac-ttttttattgaaaataactcagttattatggaacggagggagt 99  Q
    ||||||||||||||||| |||||| ||||||||||| |||||  || |||  |||| |||||| ||| ||||| |||||||||||||| | |||||||||    
T  35646203 aaaaaagtaattaatatcgtattgaaaagtgaaatgactcagttatattgagacacttttttttttgcaaatagctcagttattatgggatggagggagt 35646302  T
Q  100 a 100  Q
    |    
T  35646303 a 35646303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 25814358 - 25814255
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttatt----gaaaataactcagttattatggaacggaggg 96  Q
    |||||||||||||||||||||||| |||||||||||  ||||  ||||| |||||||||||| ||    | ||||  |||||||||||||| ||||| ||    
T  25814358 aaaaaagtaattaatattgtattgaaaagtgaaatgattcagttattttagaacactttttttttttttgcaaatgtctcagttattatgggacggatgg 25814259  T
Q  97 agta 100  Q
    ||||    
T  25814258 agta 25814255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7613701 - 7613617
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattat 85  Q
    |||||||||||||||||||||||  |||||||||||| | ||  ||||||||||| |||||| ||| ||||  |||| |||||||    
T  7613701 aaaaaagtaattaatattgtattaaaaagtgaaatggtttagttattttggaacattttttttttgcaaatggctcatttattat 7613617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 33988190 - 33988094
Alignment:
Q  5 aagtaattaatattgtattggaaagtgaaatgg-ctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    |||||||||||  ||||||| ||||||||||   ||||   ||||||| |||||||||||||||||||| | | |||||||||||| ||||||||||    
T  33988190 aagtaattaatgatgtattgaaaagtgaaataaactcacttattttgggacacttttttattgaaaatagcccggttattatggaatggagggagta 33988094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 4475233 - 4475140
Alignment:
Q  7 gtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||| |||| |||||||| ||| ||||  ||||||| ||| | |||||| | |||| ||||||||||| ||| ||||||| ||||    
T  4475233 gtaattaatattgcattgaaaagtgaattgggtcagttattttgggacaatattttatagcaaatgactcagttattttgggacggaggtagta 4475140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8692932 - 8692993
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    |||||||||||||||||||||||| ||| ||||||| ||| |  ||||||||||| ||||||    
T  8692932 aaaaaagtaattaatattgtattgaaaaatgaaatgactcggttattttggaacattttttt 8692993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 15814657 - 15814560
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt-attgaaaataactcagttattatggaacggaggga 97  Q
    |||||| ||||||||||||||||| ||||||||||| |||||  ||||||  ||| ||||||   || ||||| |||||||||||||| ||| |||||    
T  15814657 aaaaaaataattaatattgtattgaaaagtgaaatgactcagttattttgagacatttttttgggtgcaaatagctcagttattatgggacgaaggga 15814560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41184111 - 41184050
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    ||||| |||||||||||||||||| ||||| ||||  |||||  ||||||||||||||||||    
T  41184111 aaaaatgtaattaatattgtattgaaaagtaaaatcactcagttattttggaacactttttt 41184050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4194634 - 4194598
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4194634 aaaaaagtaattaatattgtattgaaaagtgaaatgg 4194598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16926203 - 16926239
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  16926203 aaaaaagtaattaatattgtattggaaaatgaaatgg 16926239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4412377 - 4412342
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4412377 aaaaaagtaattaatattgtattgaaaagtgaaatg 4412342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9426667 - 9426702
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9426667 aaaaaagtaattaatattgtattgaaaagtgaaatg 9426702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13016478 - 13016513
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  13016478 aaaaaagtaattaatattgtattgaaaagtgaaatg 13016513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13087856 - 13087891
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  13087856 aaaaaagtaattaatattgtattgaaaagtgaaatg 13087891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13598023 - 13597988
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  13598023 aaaaaagtaattaatattgtattgaaaagtgaaatg 13597988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14184163 - 14184198
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  14184163 aaaaaagtaattaatattgtattgaaaagtgaaatg 14184198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 20369269 - 20369234
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  20369269 aaaaaagtaattaatattgtattgaaaagtgaaatg 20369234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31090298 - 31090263
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatg 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  31090298 aaaaaagtaattaatattgtattgaaaagtgaaatg 31090263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 41686614 - 41686701
Alignment:
Q  10 attaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggaggga 97  Q
    ||||| ||||||||| ||||||||||| |||||  ||||||| ||||||| || ||  ||||  |||||||||||||| | |||||||    
T  41686614 attaaaattgtattgaaaagtgaaatgactcagttattttgggacactttatttttacaaatggctcagttattatgggatggaggga 41686701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15898186 - 15898152
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  15898186 aaaaaagtaattaatattgtattgaaaagtgaaat 15898152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 19889877 - 19889907
Alignment:
Q  5 aagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||||||||||    
T  19889877 aagtaattaatattgtattggaaagtgaaat 19889907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24534596 - 24534562
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  24534596 aaaaaagtaattaatattgtattgaaaagtgaaat 24534562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 858329 - 858268
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacactttttt 62  Q
    |||||||||||||||||||||||| || |||||||| ||| |  ||||| ||||| ||||||    
T  858329 aaaaaagtaattaatattgtattgaaatgtgaaatgactcggttattttagaacattttttt 858268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 5072945 - 5072856
Alignment:
Q  2 aaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacg 91  Q
    ||||| |||||| | |||||||| |||||||||||| |||    |||||||||| | |||| | | |||| |||||||||||||||||||    
T  5072945 aaaaaataattattgttgtattgaaaagtgaaatggatcaatttttttggaacaatattttttagcaaatgactcagttattatggaacg 5072856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22582985 - 22583086
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacac-ttttttattgaaaataactcagttattatggaacggagggagt 99  Q
    |||||| ||||||||||||||||| ||| ||||||  |||||  ||||  | |||| |||||| ||| |||| ||| ||||||| ||| |||||||||||    
T  22582985 aaaaaaataattaatattgtattgaaaattgaaataactcagttatttaaggacacatttttttttgcaaatgacttagttattgtgggacggagggagt 22583084  T
Q  100 aa 101  Q
    ||    
T  22583085 aa 22583086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35585731 - 35585764
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35585731 aaaaaagtaattaatattgtattgaaaagtgaaa 35585764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7276377 - 7276282
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggaggga 97  Q
    |||||||||||||||||||||||| ||||| ||||  |||||  ||||| | ||  |||||| ||| ||||  |||||||||| ||| |||||||||    
T  7276377 aaaaaagtaattaatattgtattgaaaagtaaaataactcagttattttaggac-ttttttttttgcaaatggctcagttattttgggacggaggga 7276282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7871307 - 7871271
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  7871307 aaaaaagtaattaatattgtattgaaaaatgaaatgg 7871271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39212671 - 39212735
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttatt 65  Q
    ||||||||||||||||||| |||| |||||| ||||| |||   ||||||| ||| |||||||||    
T  39212671 aaaaaagtaattaatattgcattgaaaagtggaatgggtcaattattttgggacatttttttatt 39212735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 394772 - 394672
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttat--tgaaaataactcagttattatggaacggagggag 98  Q
    |||||||||||||||  ||||||| | |||||| || ||||   ||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||    
T  394772 aaaaaagtaattaatgatgtattgaagagtgaa-tgactcacttattttggaacacttttttatattgaaaatgactcagttattatgggacggagggag 394674  T
Q  99 ta 100  Q
    ||    
T  394673 ta 394672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26316 - 26218
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacggagggagta 100  Q
    ||||||||||||||||||  |||  |||||||||||| | ||  |||||| ||||||||||| ||| ||||   ||||||||||||| ||||||||||||    
T  26316 aaaaaagtaattaatatttaattaaaaagtgaaatggtttagttattttgaaacactttttt-ttgcaaattgttcagttattatgggacggagggagta 26218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 98043 - 97962
Alignment:
Q  11 ttaatattgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatggaacgg 92  Q
    |||||||| ||||| ||||||||||| ||| |  ||||||  |||||| ||| ||| |||| ||||||||||||||| ||||    
T  98043 ttaatattatattgaaaagtgaaatgactcggttattttgagacacttattttttgcaaatgactcagttattatgggacgg 97962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 26585 - 26517
Alignment:
Q  18 tgtattggaaagtgaaatggctcagccattttggaacacttttttattgaaaataactcagttattatgg 87  Q
    ||||||| ||||||||||| ||||   ||||||| | | ||||||||||||||| |||||||||||||||    
T  26585 tgtattgaaaagtgaaatgactcatttattttgggata-ttttttattgaaaatgactcagttattatgg 26517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 230251 - 230210
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatggctcag 42  Q
    |||||| ||||||||||||||||| ||||||||||| |||||    
T  230251 aaaaaaataattaatattgtattgaaaagtgaaatgactcag 230210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 158021 - 157985
Alignment:
Q  1 aaaaaagtaattaatattgtattggaaagtgaaatgg 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  158021 aaaaaaataattaatattgtattgaaaagtgaaatgg 157985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University