View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20774_low_11 (Length: 208)
Name: NF20774_low_11
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20774_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 98620 - 98442
Alignment:
| Q |
13 |
ataatacttggggtccaaaatatatattttaatatgtaagacactaaagcaacagttatatataattaaaattgaataatttacaaaatgacaacaatgc |
112 |
Q |
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| T |
98620 |
ataaaacttggggtccaaaatatatattttaatatgtaagacactaaagcaacagttatatataattaaaattgaataatttacaaaatgacaacaatgc |
98521 |
T |
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| Q |
113 |
ttcagtggtgtttcctaatgtgcttgatcttgttgtcatgggttccatttaataagtctcctttatgggtgcccctaat |
191 |
Q |
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| T |
98520 |
ttcagtggtgtttcctaatgtgcttgatcttgttgtcatgggttccatttaataagtcttctttatgggtgcccctaat |
98442 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 23980061 - 23980025
Alignment:
| Q |
20 |
ttggggtccaaaatatatattttaatatgtaagacac |
56 |
Q |
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|||||||||||||||||| |||| ||||||||||||| |
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| T |
23980061 |
ttggggtccaaaatatatttttttatatgtaagacac |
23980025 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 45906110 - 45906146
Alignment:
| Q |
20 |
ttggggtccaaaatatatattttaatatgtaagacac |
56 |
Q |
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|||||||||||||||| |||||| ||||||||||||| |
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| T |
45906110 |
ttggggtccaaaatatttatttttatatgtaagacac |
45906146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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