View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20774_low_2 (Length: 564)

Name: NF20774_low_2
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20774_low_2
NF20774_low_2
[»] chr7 (5 HSPs)
chr7 (19-554)||(34719461-34719993)
chr7 (26-401)||(18925453-18925825)
chr7 (19-422)||(34714830-34715230)
chr7 (24-298)||(34729615-34729889)
chr7 (24-298)||(34734179-34734453)
[»] chr4 (21 HSPs)
chr4 (19-298)||(6833289-6833568)
chr4 (42-304)||(6793361-6793623)
chr4 (19-306)||(6549218-6549505)
chr4 (36-304)||(6592057-6592325)
chr4 (26-298)||(6625694-6625966)
chr4 (36-304)||(6770430-6770698)
chr4 (87-304)||(6648110-6648327)
chr4 (26-304)||(6716406-6716684)
chr4 (79-304)||(6536895-6537120)
chr4 (36-304)||(6501182-6501450)
chr4 (26-306)||(6749849-6750129)
chr4 (98-305)||(6812793-6812998)
chr4 (127-305)||(6712743-6712921)
chr4 (101-210)||(10034814-10034923)
chr4 (30-304)||(7889514-7889788)
chr4 (35-167)||(21227143-21227275)
chr4 (513-557)||(28485788-28485832)
chr4 (26-124)||(6667133-6667231)
chr4 (513-546)||(23149866-23149899)
chr4 (406-446)||(6549081-6549121)
chr4 (406-446)||(6591918-6591958)
[»] scaffold0813 (1 HSPs)
scaffold0813 (108-304)||(1992-2188)
[»] scaffold0552 (1 HSPs)
scaffold0552 (98-305)||(265-470)
[»] scaffold0373 (2 HSPs)
scaffold0373 (79-166)||(12773-12860)
scaffold0373 (240-304)||(12681-12745)
[»] chr6 (5 HSPs)
chr6 (19-88)||(5092812-5092881)
chr6 (58-106)||(5264391-5264439)
chr6 (35-88)||(5149863-5149916)
chr6 (36-88)||(5429490-5429542)
chr6 (58-106)||(5444017-5444065)
[»] chr1 (3 HSPs)
chr1 (513-545)||(27446681-27446713)
chr1 (513-546)||(9922208-9922241)
chr1 (513-546)||(40905825-40905858)
[»] chr5 (1 HSPs)
chr5 (513-551)||(32997444-32997482)
[»] chr8 (1 HSPs)
chr8 (513-546)||(26413398-26413431)
[»] chr3 (1 HSPs)
chr3 (513-557)||(1707276-1707320)


Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 554
Target Start/End: Complemental strand, 34719993 - 34719461
Alignment:
Q  19 aagatactcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatca 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34719993 aagatactcgtgcaagattcatttcacatctctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatca 34719894  T
Q  119 gatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34719893 gatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttg 34719794  T
Q  219 tagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatcaaaccggcaaattcg 318  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34719793 gagcaaatcatggaatgtggaagaagcagggatctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatcaaaccggcaaattcg 34719694  T
Q  319 gagatggctttgaaaaactcgtctcaggaatctcagtggatgaagaagatgagaagatgaattggaaaacagcgctccttgaaatcagtggcatagcagg 418  Q
    ||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34719693 gagatggttttgaaaaactcgtctcaggaatctcagtggatg---aagatgagaagatgaattggaaaacagcgctccttgaaatcagtggcatagcagg 34719597  T
Q  419 gtttgtcctcataaattccaggtgatttttatttatttatttgttatactttagtaatgtcagatcatgatctttggcttcctgaccnnnnnnnaatgac 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||     
T  34719596 gtttgtcctcataaattccaggtgatttttatttatttatttgttatacattagtaatgtcagatcatgatctttggcttcctgacctttttttaatgat 34719497  T
Q  519 aaatgttagtatgttatttgttatgttaatattctt 554  Q
    ||||||||||||||||||||||||||||||||||||    
T  34719496 aaatgttagtatgttatttgttatgttaatattctt 34719461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 26 - 401
Target Start/End: Original strand, 18925453 - 18925825
Alignment:
Q  26 tcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcg 125  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||  | ||| ||||||| | |||| || |||||||||| ||||| |||||||||||     
T  18925453 tcgtgcaaaattcatttcacatctctatacttctcttcaaaatgccggtattcatgttttcaaagacaatgatgagattcaacgaggagatcagatctca 18925552  T
Q  126 gtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaa 225  Q
     ||||||| |||  ||||||||   ||| ||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||  ||||||| |  | |    
T  18925553 ttctcacttttgaaagcaattgaagagtgtagaatttctatagttgttttgtctagtaattatgctaattcaagatggtgtatgtcagagttggacaaca 18925652  T
Q  226 tcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatcaaaccggcaaattcggagatgg 325  Q
    ||||| ||  | | |||||   ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  || ||||| ||    
T  18925653 tcatgaaagttagcagaagggagggtcggatggttataccagtgttctatgaggtagatccctcagaagtacgacatcaaaccggcatgtttggagacgg 18925752  T
Q  326 ctttgaaaaactcgtctcaggaatctcagtggatgaagaagatgagaagatgaattggaaaacagcgctccttgaa 401  Q
     |||||||||||| ||||| ||||  | ||||||    || ||  |||||||||||||||||||||||||||||||    
T  18925753 ttttgaaaaactcatctcaagaattccggtggat---aaatatacgaagatgaattggaaaacagcgctccttgaa 18925825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 34715230 - 34714830
Alignment:
Q  19 aagatactcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatca 118  Q
    |||||||||| | |||||| | |||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||| ||  |    
T  34715230 aagatactcgcgaaagattgacttcacatctctatacctctcttcaaaatgctggaatttatgtttttagagacgataatgagattcaaccaggagaaaa 34715131  T
Q  119 gatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttg 218  Q
    |||||| ||||  || |||  ||||||| | |||| |||||||| |||| |||| |||| |||||||||||| | |||||  ||| ||||||||||||||    
T  34715130 gatctcagtctaccttttggaagcaattagacagtatagaatttgtattgttgttttgtatagtaattatgctagttcaaactggcgtatgcaagagttg 34715031  T
Q  219 tagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatcaaaccggcaaattcg 318  Q
     || |||||||| ||||| | ||| || ||||| ||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||    || |    
T  34715030 gaggaaatcatgaaatgtcgcagacgctggggtttggtggttataccagtgttttatgaggtagatccctcagaagtagaacatcaaaccggttggtttg 34714931  T
Q  319 gagatggctttgaaaaactcgtctcaggaatctcagtggatgaagaagatgagaagatgaattggaaaacagcgctccttgaaatcagtggcatagcagg 418  Q
    |||| || ||||||| |||| ||||| |||||||| ||  | ||  | ||||||||  ||||||||||  |  ||||||||||||| |||||||||||||    
T  34714930 gagacggttttgaaagactcatctcaagaatctcaatgcgt-aacgatatgagaag--gaattggaaagaaatgctccttgaaatcggtggcatagcagg 34714834  T
Q  419 gttt 422  Q
    ||||    
T  34714833 gttt 34714830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 34729889 - 34729615
Alignment:
Q  24 actcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatct 123  Q
    |||||||||| |||||||||||| ||||||||  ||||| |||||||| ||||| ||||||||||||| ||| |||||||||| ||||||||||||||||    
T  34729889 actcgtgcaaaattcatttcacatctctatacagctcttgaaaatgctggaatttatgtttttagagatgatgatgagattcaacgaggtgatcagatct 34729790  T
Q  124 cggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagca 223  Q
    | |  ||| |||||| |||||||| |||||||| |||||||||  |||| |||||||| |  |||||  |||||||||||||||||| |||| || || |    
T  34729789 cagcgtcattgttgcaagcaattgagcagtctaaaatttctatcgttgttttgtctagaagctatgctgattcaagatggtgtatgctagagctggagaa 34729690  T
Q  224 aatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacg 298  Q
     |||||||    | | |||| |  |||| |||||||| ||||||||||||||||  || |||||||||| |||||    
T  34729689 catcatgggcaatagcagaacccagggtatggtggttgtaccagtgttctatgaaatagatccctcagaggtacg 34729615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 34734453 - 34734179
Alignment:
Q  24 actcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatct 123  Q
    |||| ||||| |||||||||||| ||||||||  | ||| |||||||| ||||| |||||||||||| |||| |||||||||| |||||||||||| |||    
T  34734453 actcatgcaaaattcatttcacatctctatacggcccttgaaaatgctggaatttatgtttttagaggcgatgatgagattcaacgaggtgatcaggtct 34734354  T
Q  124 cggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagca 223  Q
    | || ||| |||||| ||| || || ||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||||||| |||| || || |    
T  34734353 cagtgtcattgttgcaagccataggacagtctagaatttctatcattgttttgtctagaaactatgctaattcaagatggtgtatgctagagctggagaa 34734254  T
Q  224 aatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacg 298  Q
     |||||||    | | |||| |  |||| |||||||| |||||||||||||| |  || ||||| ||||||||||    
T  34734253 tatcatgggcaatagcagaacccagggtatggtggttgtaccagtgttctataaaatagatcccacagaagtacg 34734179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 6833289 - 6833568
Alignment:
Q  19 aagatactcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatca 118  Q
    |||||| ||||||||  ||||| ||||| |||| | |||||||||||||||   | ||| ||| ||| | ||||||||| |||||||| ||||| |||||    
T  6833289 aagatagtcgtgcaaagttcatgtcacatctcttttcctctcttcaaaatgaagggattcatgctttcaaagacgataacgagattcaacgaggagatca 6833388  T
Q  119 gatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttg 218  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||| ||||| |||||||  |||||||| ||||||||||||||||||| |||||||    
T  6833389 gatctcaatctcactgttgcgagcaattgggcagtctagaatttctatcattgttttgtctacaaattatgccaattcaagatggtgtatgctagagttg 6833488  T
Q  219 tagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacg 298  Q
     || | || ||||||  |||||||| || ||||||  | ||| | ||||||||||||||||||  |||||||||||||||    
T  6833489 gagaagataatggaaattggaagaaccaagggtcttattgttgtgccagtgttctatgaggtagctccctcagaagtacg 6833568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 42 - 304
Target Start/End: Original strand, 6793361 - 6793623
Alignment:
Q  42 tcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcggtctcactgttgcgag 141  Q
    ||||| |||||| |||| |||||||||||  | ||| ||||||| | ||||||| |||||||||| ||||| ||||| |||||  |||||||||||||||    
T  6793361 tcacatctctattcctcccttcaaaatgcagggattcatgttttcaaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgag 6793460  T
Q  142 caattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaatcatggaatgtggaag 241  Q
    ||||||| |||||||||||||||||| |||| |||||||  ||||| || ||||||||||||||||||| ||||||| || | || ||||||  ||| ||    
T  6793461 caattggacagtctagaatttctattgttgtgttgtctacaaattacgccaattcaagatggtgtatgctagagttggagaagataatggaaattggcag 6793560  T
Q  242 aagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatca 304  Q
    || |||||||||||| ||| | ||||||||||| ||||||  ||||||||||||||| |||||    
T  6793561 aaacaggggtctggttgttgtgccagtgttctacgaggtagctccctcagaagtacgtcatca 6793623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 6549505 - 6549218
Alignment:
Q  19 aagatactcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatca 118  Q
    |||||| |||||| | |||||||||||| ||  || |||||||| |||||||  | ||| ||||||| | |||||||    ||||||| ||||| |||||    
T  6549505 aagatagtcgtgcgaaattcatttcacatctgcattcctctcttgaaaatgcagggattcatgttttcaaagacgatttcaagattcaacgaggagatca 6549406  T
Q  119 gatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttg 218  Q
    ||| ||  |||||||||| ||||||||||| ||||||||||||| |||  |||| |||||||  |||||||| ||||| |||||||||||||  ||||||    
T  6549405 gatatcaatctcactgtttcgagcaattggacagtctagaatttgtatcgttgttttgtctaaaaattatgctaattctagatggtgtatgcttgagttg 6549306  T
Q  219 tagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatcaaa 306  Q
     || | |||||||||  ||| |||| |||||||||||| ||| |||||||||||||||||||  |||||||||||||||| |||||||    
T  6549305 gagaacatcatggaaattggtagaaacaggggtctggtcgttgtaccagtgttctatgaggtggatccctcagaagtacgtcatcaaa 6549218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 36 - 304
Target Start/End: Complemental strand, 6592325 - 6592057
Alignment:
Q  36 ttcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcggtctcactgt 135  Q
    ||||| ||||| |||||| ||||||||||||||||  | ||| ||||||| ||||||||| | |||||||| ||||| ||||| |||||  |||||||||    
T  6592325 ttcatgtcacatctctattcctctcttcaaaatgcggggatttatgttttcagagacgatgacgagattcaacgaggagatcatatctcaatctcactgt 6592226  T
Q  136 tgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaatcatggaatg 235  Q
    ||||||||||||  |||||||||| || |||  |||| |||||||  |||||||| ||||||||||||||||||| ||||||| || | || ||||||      
T  6592225 tgcgagcaattgaacagtctagaacttgtatcgttgttttgtctacaaattatgctaattcaagatggtgtatgctagagttggagaagataatggaaat 6592126  T
Q  236 tggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatca 304  Q
    ||| |||| |||||||||||| ||| | ||||| || |||||||||  ||| ||||||||||| |||||    
T  6592125 tggcagaaacaggggtctggtcgttgtgccagtattttatgaggtagctccatcagaagtacgccatca 6592057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 26 - 298
Target Start/End: Complemental strand, 6625966 - 6625694
Alignment:
Q  26 tcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcg 125  Q
    ||||||||  ||||||||||| |||||| | ||||||||||||||  | ||| ||||||| | ||||||  |||| ||||| ||||| |||||||||||     
T  6625966 tcgtgcaaagttcatttcacatctctattcatctcttcaaaatgccgggatttatgttttcaaagacgacgatgaaattcaacgaggcgatcagatctca 6625867  T
Q  126 gtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaa 225  Q
     | ||||| ||||||||||| || || |||||||||| |||| | || || ||||  || ||||| ||||||||||||||||||| ||||||| || | |    
T  6625866 atttcactattgcgagcaatcggacactctagaatttttattgtggttttatctacaaactatgctaattcaagatggtgtatgctagagttggagaaga 6625767  T
Q  226 tcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacg 298  Q
    | ||||||  ||| |||| | |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  6625766 taatggaaattggcagaaccgggggtctggtggttgtaccagtgttctatgaggtagatccctcagaagtacg 6625694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 36 - 304
Target Start/End: Original strand, 6770430 - 6770698
Alignment:
Q  36 ttcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcggtctcactgt 135  Q
    ||||||||||| |||||| |||||||||||||| |    |||  || ||||||||||||| ||||| |||| ||||| || || || ||  || ||||||    
T  6770430 ttcatttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatcgcactgt 6770529  T
Q  136 tgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaatcatggaatg 235  Q
    ||||||||||||| |||||||||||||||||  |||| || ||||  |||||||| ||||| ||||||||||||| ||||||| || | |||||||||      
T  6770530 tgcgagcaattggacagtctagaatttctatagttgttttctctacaaattatgctaattctagatggtgtatgctagagttggagaagatcatggaaat 6770629  T
Q  236 tggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatca 304  Q
    ||| |||| ||||||| |||| ||| | |||||||||||||||||  |||| ||||||||||| |||||    
T  6770630 tggcagaaccaggggtttggttgttgtgccagtgttctatgaggtggatccttcagaagtacgtcatca 6770698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 87 - 304
Target Start/End: Original strand, 6648110 - 6648327
Alignment:
Q  87 agagacgataatgagattcagcgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaatt 186  Q
    ||||| ||| || ||||||||||||| ||||| ||||| |||||||||||||||||||| || || ||||||||||| || ||| | |||||||  ||||    
T  6648110 agagatgatgatcagattcagcgaggagatcaaatctcagtctcactgttgcgagcaatcggacaatctagaatttccatcattattttgtctacaaatt 6648209  T
Q  187 atgcaaattcaagatggtgtatgcaagagttgtagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatcc 286  Q
    |||| ||||| ||||||||||||| |||||||  | | || ||||||  ||| ||||  ||||||||||||||| | |||||||| ||||||||| ||||    
T  6648210 atgctaattccagatggtgtatgctagagttggtgaagataatggaaattggtagaactaggggtctggtggttttgccagtgttttatgaggtagatcc 6648309  T
Q  287 ctcagaagtacgacatca 304  Q
    |||||||||||| |||||    
T  6648310 ctcagaagtacgtcatca 6648327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 304
Target Start/End: Original strand, 6716406 - 6716684
Alignment:
Q  26 tcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcg 125  Q
    |||| |||| ||||| ||||| ||| || |||||||||| | |||  | ||| ||| ||| | ||||||  ||| |||||| ||||| ||||| ||||||    
T  6716406 tcgtccaaggttcatatcacatctccattcctctcttcacagtgcagggatttatgctttcaaagacgacgatgggattcaacgaggagatcaaatctcg 6716505  T
Q  126 gtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaa 225  Q
    |||||||||  |  ||||||||  |||||||||||||||||  |||| |||||||  |||||||| ||||||||||||||||||  ||||||| || | |    
T  6716506 gtctcactggggaaagcaattgaacagtctagaatttctatcgttgttttgtctacaaattatgctaattcaagatggtgtatgttagagttggagaaga 6716605  T
Q  226 tcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatca 304  Q
    ||||||||  ||| ||||  |  |||| ||||||| | ||||| |||||||| ||| ||||||||||||||||||||||    
T  6716606 tcatggaagttggcagaatgaacggtcgggtggttgtgccagtcttctatgatgtagatccctcagaagtacgacatca 6716684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 79 - 304
Target Start/End: Complemental strand, 6537120 - 6536895
Alignment:
Q  79 atgtttttagagacgataatgagattcagcgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtc 178  Q
    ||||||| | ||||||| | |||||  | ||||| |||||||||||  | |||||||||||||||||||| | |||||||||| |  |  |||| |||||    
T  6537120 atgttttcaaagacgatgacgagatcgaacgaggagatcagatctcaatatcactgttgcgagcaattggacggtctagaattgccctcgttgttttgtc 6537021  T
Q  179 tagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgag 278  Q
    ||  || ||||| ||||||||||||||||||| ||||||| || | |||||||||  ||| ||   |||||||||||||||| | |||||||||||||||    
T  6537020 taaaaaatatgctaattcaagatggtgtatgctagagttggagaagatcatggaaattggcagggccaggggtctggtggttgtgccagtgttctatgag 6536921  T
Q  279 gtaaatccctcagaagtacgacatca 304  Q
    ||  |||||||||||||||| |||||    
T  6536920 gtggatccctcagaagtacgtcatca 6536895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 36 - 304
Target Start/End: Complemental strand, 6501450 - 6501182
Alignment:
Q  36 ttcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcggtctcactgt 135  Q
    ||||| ||||| || ||||||||||||||||||||  ||||| ||  ||| ||||| ||| | ||||||||| |||| ||||  |||||  | ||||| |    
T  6501450 ttcatatcacatctttatacctctcttcaaaatgcaggaatttatactttcagagatgatgacgagattcagagaggagatcgaatctcaatgtcactat 6501351  T
Q  136 tgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaatcatggaatg 235  Q
    ||  |||||| |||| |||||||||||||||| |||| |||||||  | |||||| ||||| ||||||||||||| |||||||  | | || ||||||      
T  6501350 tgaaagcaatcgggcggtctagaatttctattgttgttttgtctacaacttatgccaattcgagatggtgtatgctagagttggtgaagataatggaaat 6501251  T
Q  236 tggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatca 304  Q
    ||| ||||  | || |||| | ||| | ||||||||||| |||||| ||||||| |||||||| |||||    
T  6501250 tggcagaactatggatctgatcgttgtgccagtgttctacgaggtagatccctctgaagtacgtcatca 6501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 26 - 306
Target Start/End: Original strand, 6749849 - 6750129
Alignment:
Q  26 tcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcg 125  Q
    |||||||| |||||||||||| ||  || | ||||||||||||||    ||| |||| ||   ||||||| | |||||||| ||||| ||||| || |||    
T  6749849 tcgtgcaaaattcatttcacatctgcattcttctcttcaaaatgcagcgattcatgtcttccaagacgatgacgagattcaacgaggagatcaaatatcg 6749948  T
Q  126 gtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaa 225  Q
     | || ||||| ||||||||||  |||||||||||||||||  |||| |||||||  |  ||||| ||||||||||||||||||| ||||||| || | |    
T  6749949 atatcgctgttccgagcaattgaacagtctagaatttctatcgttgttttgtctacaagctatgctaattcaagatggtgtatgctagagttggagaaga 6750048  T
Q  226 tcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatcaaa 306  Q
    ||||||||  | | |||| || |||||| || ||| | |||||||||||||| ||  | ||||||||||| || |||||||    
T  6750049 tcatggaaatttgtagaaacaagggtctagttgttgtgccagtgttctatgatgtggacccctcagaagtgcgtcatcaaa 6750129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 98 - 305
Target Start/End: Original strand, 6812793 - 6812998
Alignment:
Q  98 tgagattcagcgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattca 197  Q
    ||||||||| ||||| ||||| |||||  ||||  |||||  |||||||||   |||||||||||||||  |||| || || |  |||||||| ||||||    
T  6812793 tgagattcaacgaggagatcatatctcaatctc--tgttgaaagcaattggatggtctagaatttctatagttgttttatcgataaattatgctaattca 6812890  T
Q  198 agatggtgtatgcaagagttgtagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtac 297  Q
    ||||||||||||   |||||| || | |||||||||  |||||||| | | ||| |||||||| ||||||| |||||||||||| |||||||||||||||    
T  6812891 agatggtgtatgtttgagttggagaagatcatggaaattggaagaaccggtggtatggtggttgtaccagtcttctatgaggtagatccctcagaagtac 6812990  T
Q  298 gacatcaa 305  Q
    | ||||||    
T  6812991 gtcatcaa 6812998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 127 - 305
Target Start/End: Original strand, 6712743 - 6712921
Alignment:
Q  127 tctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaat 226  Q
    |||||||||| ||||||||| | || || |||||||||||  |||| ||||| |  |||||||| ||||||||||||||||||   |||||| || | ||    
T  6712743 tctcactgttacgagcaattcgacactcaagaatttctatagttgttttgtcgataaattatgctaattcaagatggtgtatgtttgagttggagaagat 6712842  T
Q  227 catggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatcaa 305  Q
    |||||||  |||||||| | | |||||||||||| |||||||  | ||||||||| |||| ||||||||||| ||||||    
T  6712843 catggaaattggaagaaccggtggtctggtggttgtaccagtcctttatgaggtagatccatcagaagtacgtcatcaa 6712921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 10034814 - 10034923
Alignment:
Q  101 gattcagcgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaaga 200  Q
    |||||| || || ||| ||||||| |||||| |||| | ||||||||| |||||||||||||||||| ||||||||||||| |||| ||| ||||||| |    
T  10034814 gattcaacgtggagataagatctcagtctcattgttacaagcaattggtcagtctagaatttctattgttgtattgtctagaaattttgctaattcaaaa 10034913  T
Q  201 tggtgtatgc 210  Q
    ||||||||||    
T  10034914 tggtgtatgc 10034923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 304
Target Start/End: Complemental strand, 7889788 - 7889514
Alignment:
Q  30 gcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcggtct 129  Q
    |||| |||||||||||| || |||| ||||||||||||| |  |  || ||||||| | ||||||| ||| |||||| ||||| ||||||||||| |||     
T  7889788 gcaaaattcatttcacatctatatatctctcttcaaaattccgggctttatgttttcaaagacgatgatgggattcaacgaggagatcagatctcagtcg 7889689  T
Q  130 cactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgtatgcaagagttgtagcaaatcat 229  Q
    ||||  | | |||  | || ||||||| |||||||||| ||||  ||||||  || | ||| ||||||| ||||||||||  ||||||| ||  |||  |    
T  7889688 cactaatccaagctgtcggacagtctaaaatttctattgttgttctgtctaaaaactttgctaattcaaaatggtgtatgacagagttggagagaattgt 7889589  T
Q  230 ggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatca 304  Q
    ||||    | |||| || |||| ||||| || | |||||||||||||||||| ||||||| |||||||| |||||    
T  7889588 ggaaatcagtagaaccaagggtatggtgcttgtgccagtgttctatgaggtagatccctcggaagtacgtcatca 7889514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 21227143 - 21227275
Alignment:
Q  35 attcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcggtctcactg 134  Q
    |||||||||||| ||| || ||||||||| ||||||| | ||| ||||||| | ||||||  ||| |||  | ||||| ||||||||||| | ||||||     
T  21227143 attcatttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggatagaacgaggagatcagatctcaggctcactc 21227242  T
Q  135 ttgcgagcaattgggcagtctagaatttctatt 167  Q
    |||| |||||| || ||||||||||||||||||    
T  21227243 ttgcaagcaatcggacagtctagaatttctatt 21227275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 557
Target Start/End: Complemental strand, 28485832 - 28485788
Alignment:
Q  513 aatgacaaatgttagtatgttatttgttatgttaatattcttctc 557  Q
    |||||||||||||||||||||| |||||||||||||||| |||||    
T  28485832 aatgacaaatgttagtatgttaattgttatgttaatatttttctc 28485788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 6667133 - 6667231
Alignment:
Q  26 tcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctc 124  Q
    ||||||||  ||||| ||||| |||||| | ||||||||||||||  | ||| ||  ||| ||||| ||| |||||||||| |||||||||||||||||    
T  6667133 tcgtgcaaagttcatgtcacacctctattcttctcttcaaaatgcgggtatttatactttcagagatgatgatgagattcaacgaggtgatcagatctc 6667231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Original strand, 23149866 - 23149899
Alignment:
Q  513 aatgacaaatgttagtatgttatttgttatgtta 546  Q
    |||||||||||||||||||||| |||||||||||    
T  23149866 aatgacaaatgttagtatgttaattgttatgtta 23149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 6549121 - 6549081
Alignment:
Q  406 gtggcatagcagggtttgtcctcataaattccaggtgattt 446  Q
    |||||||| |||||||||||||||||||||| |||| ||||    
T  6549121 gtggcatatcagggtttgtcctcataaattcaaggttattt 6549081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 6591958 - 6591918
Alignment:
Q  406 gtggcatagcagggtttgtcctcataaattccaggtgattt 446  Q
    |||| ||||||||||||||||||||| ||||||||| ||||    
T  6591958 gtggaatagcagggtttgtcctcatagattccaggttattt 6591918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 108 - 304
Target Start/End: Complemental strand, 2188 - 1992
Alignment:
Q  108 cgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattcaagatggtgta 207  Q
    ||||| ||||| |||||||||||||||  |  ||||||||  |||||||||||||||||  |||| |||||||  |||||||| ||||||||||||||||    
T  2188 cgaggagatcaaatctcggtctcactggggaaagcaattgaacagtctagaatttctatcgttgttttgtctacaaattatgctaattcaagatggtgta 2089  T
Q  208 tgcaagagttgtagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatca 304  Q
    ||  ||||||| || | |||||||||  ||| ||||  |  |||| ||||||| | ||||| |||||||| ||| ||||||||||||||||||||||    
T  2088 tgttagagttggagaagatcatggaagttggcagaatgaacggtcgggtggttgtgccagtcttctatgatgtagatccctcagaagtacgacatca 1992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 98 - 305
Target Start/End: Original strand, 265 - 470
Alignment:
Q  98 tgagattcagcgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctattattgtattgtctagtaattatgcaaattca 197  Q
    ||||||||| ||||| ||||| |||||  ||||  |||||  |||||||||   |||||||||||||||  |||| || || |  |||||||| ||||||    
T  265 tgagattcaacgaggagatcatatctcaatctc--tgttgaaagcaattggatggtctagaatttctatagttgttttatcgataaattatgctaattca 362  T
Q  198 agatggtgtatgcaagagttgtagcaaatcatggaatgtggaagaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtac 297  Q
    ||||||||||||   |||||| || | |||||||||  |||||||| | | ||| |||||||| ||||||| |||||||||||| |||||||||||||||    
T  363 agatggtgtatgtttgagttggagaagatcatggaaattggaagaaccggtggtatggtggttgtaccagtcttctatgaggtagatccctcagaagtac 462  T
Q  298 gacatcaa 305  Q
    | ||||||    
T  463 gtcatcaa 470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 12860 - 12773
Alignment:
Q  79 atgtttttagagacgataatgagattcagcgaggtgatcagatctcggtctcactgttgcgagcaattgggcagtctagaatttctat 166  Q
    ||||||| | ||||||| |||||||||| ||||| ||||| |||||  |||||||||  ||| ||||||| |||||||||||||||||    
T  12860 atgttttcaaagacgatgatgagattcaccgaggagatcatatctcaatctcactgtgccgaccaattggccagtctagaatttctat 12773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 12745 - 12681
Alignment:
Q  240 agaagcaggggtctggtggttataccagtgttctatgaggtaaatccctcagaagtacgacatca 304  Q
    |||| |||||||||||| ||| | |||||||| || ||||||  ||||||||||||||| |||||    
T  12745 agaaccaggggtctggttgttgtgccagtgttttacgaggtagctccctcagaagtacgtcatca 12681  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 5092812 - 5092881
Alignment:
Q  19 aagatactcgtgcaagattcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttag 88  Q
    ||||||||||||||  ||||| |||||| |||||| | || |||||||||||| ||||||||||||||||    
T  5092812 aagatactcgtgcatcattcacttcacatctctatgcttcacttcaaaatgctggaattaatgtttttag 5092881  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 5264439 - 5264391
Alignment:
Q  58 ctcttcaaaatgctagaattaatgtttttagagacgataatgagattca 106  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  5264439 ctcttcaaaatgctggaattaaagtttttagagacgataatgagcttca 5264391  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 5149916 - 5149863
Alignment:
Q  35 attcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttag 88  Q
    ||||| |||||| |||||| | ||||||||||||||| ||||||| ||||||||    
T  5149916 attcacttcacatctctatgcttctcttcaaaatgctggaattaaagtttttag 5149863  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 5429490 - 5429542
Alignment:
Q  36 ttcatttcacaactctatacctctcttcaaaatgctagaattaatgtttttag 88  Q
    |||| |||||| |||||| | ||||||||||||||| |||||| |||||||||    
T  5429490 ttcacttcacatctctatgcttctcttcaaaatgctggaattactgtttttag 5429542  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 5444017 - 5444065
Alignment:
Q  58 ctcttcaaaatgctagaattaatgtttttagagacgataatgagattca 106  Q
    |||||||||| ||| ||||||| ||||||| ||||||||||||| ||||    
T  5444017 ctcttcaaaaggctggaattaaggtttttatagacgataatgagcttca 5444065  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 545
Target Start/End: Complemental strand, 27446713 - 27446681
Alignment:
Q  513 aatgacaaatgttagtatgttatttgttatgtt 545  Q
    |||||||||||||||||||||||||||||||||    
T  27446713 aatgacaaatgttagtatgttatttgttatgtt 27446681  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 9922241 - 9922208
Alignment:
Q  513 aatgacaaatgttagtatgttatttgttatgtta 546  Q
    |||||||||||||||||||||| |||||||||||    
T  9922241 aatgacaaatgttagtatgttaattgttatgtta 9922208  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 40905858 - 40905825
Alignment:
Q  513 aatgacaaatgttagtatgttatttgttatgtta 546  Q
    |||||||||||||||||||||| |||||||||||    
T  40905858 aatgacaaatgttagtatgttaattgttatgtta 40905825  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 551
Target Start/End: Original strand, 32997444 - 32997482
Alignment:
Q  513 aatgacaaatgttagtatgttatttgttatgttaatatt 551  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  32997444 aatgacaaatgttagtatgttagttgttacgttaatatt 32997482  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Original strand, 26413398 - 26413431
Alignment:
Q  513 aatgacaaatgttagtatgttatttgttatgtta 546  Q
    |||||||||||||||||||||| |||||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgtta 26413431  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 557
Target Start/End: Original strand, 1707276 - 1707320
Alignment:
Q  513 aatgacaaatgttagtatgttatttgttatgttaatattcttctc 557  Q
    |||||||||||||| ||||||| ||||||||||| |||| |||||    
T  1707276 aatgacaaatgttattatgttaattgttatgttattatttttctc 1707320  T

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