View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20774_low_3 (Length: 497)

Name: NF20774_low_3
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20774_low_3
NF20774_low_3
[»] chr7 (12 HSPs)
chr7 (33-383)||(35450885-35451235)
chr7 (382-485)||(35450735-35450838)
chr7 (175-235)||(25635870-25635930)
chr7 (47-150)||(37829939-37830042)
chr7 (84-139)||(7879050-7879105)
chr7 (99-148)||(3294509-3294557)
chr7 (81-138)||(23355916-23355973)
chr7 (65-136)||(33872793-33872864)
chr7 (153-196)||(24118411-24118454)
chr7 (99-136)||(7913833-7913870)
chr7 (101-154)||(32522280-32522333)
chr7 (103-135)||(3140460-3140492)
[»] chr3 (18 HSPs)
chr3 (81-139)||(10428023-10428081)
chr3 (65-135)||(42529470-42529540)
chr3 (65-148)||(15328079-15328162)
chr3 (102-150)||(48308082-48308129)
chr3 (92-134)||(38996840-38996882)
chr3 (95-137)||(41737945-41737987)
chr3 (104-153)||(32775748-32775797)
chr3 (152-268)||(32104130-32104245)
chr3 (96-148)||(49972727-49972779)
chr3 (96-139)||(7255197-7255240)
chr3 (108-150)||(40111767-40111808)
chr3 (78-135)||(19164327-19164384)
chr3 (65-126)||(21498406-21498466)
chr3 (78-135)||(46515489-46515546)
chr3 (65-133)||(51569845-51569914)
chr3 (102-134)||(5805175-5805207)
chr3 (92-128)||(25335104-25335140)
chr3 (116-148)||(48871368-48871400)
[»] chr8 (20 HSPs)
chr8 (176-268)||(13402226-13402318)
chr8 (65-148)||(14770886-14770969)
chr8 (65-135)||(26055485-26055555)
chr8 (65-148)||(14768183-14768266)
chr8 (109-148)||(16622586-16622625)
chr8 (80-135)||(33300497-33300552)
chr8 (99-148)||(5368287-5368335)
chr8 (99-148)||(13380481-13380530)
chr8 (62-123)||(20472419-20472480)
chr8 (65-117)||(12020094-12020146)
chr8 (172-204)||(23489967-23489999)
chr8 (100-139)||(18069349-18069388)
chr8 (85-135)||(19349536-19349586)
chr8 (101-139)||(30756198-30756236)
chr8 (107-136)||(23689578-23689607)
chr8 (102-135)||(38580483-38580516)
chr8 (47-123)||(9834641-9834717)
chr8 (107-135)||(12165705-12165733)
chr8 (107-135)||(12410133-12410161)
chr8 (100-148)||(35753108-35753155)
[»] chr2 (14 HSPs)
chr2 (66-139)||(41508142-41508215)
chr2 (65-148)||(25726928-25727010)
chr2 (81-147)||(10156316-10156384)
chr2 (103-139)||(25728076-25728112)
chr2 (62-122)||(31827306-31827366)
chr2 (147-199)||(42237563-42237615)
chr2 (97-148)||(15608341-15608391)
chr2 (100-150)||(20242429-20242479)
chr2 (93-139)||(33859213-33859258)
chr2 (103-148)||(1882440-1882485)
chr2 (107-136)||(5251418-5251447)
chr2 (72-129)||(41342256-41342313)
chr2 (86-135)||(41714261-41714310)
chr2 (99-135)||(20961623-20961659)
[»] chr1 (18 HSPs)
chr1 (67-136)||(46610957-46611027)
chr1 (62-151)||(15275936-15276025)
chr1 (99-135)||(10799268-10799304)
chr1 (57-136)||(10280412-10280491)
chr1 (91-137)||(2783560-2783606)
chr1 (175-216)||(9457757-9457798)
chr1 (175-216)||(9461854-9461895)
chr1 (152-205)||(26828587-26828640)
chr1 (66-139)||(29561257-29561330)
chr1 (92-148)||(6871259-6871315)
chr1 (66-149)||(31283760-31283843)
chr1 (93-136)||(45443435-45443479)
chr1 (65-119)||(11391330-11391382)
chr1 (99-150)||(47404872-47404922)
chr1 (82-135)||(9454516-9454569)
chr1 (107-136)||(15535650-15535679)
chr1 (67-123)||(44751947-44752003)
chr1 (103-135)||(49416314-49416346)
[»] chr5 (12 HSPs)
chr5 (47-116)||(9860748-9860817)
chr5 (51-123)||(7367609-7367681)
chr5 (66-125)||(528831-528890)
chr5 (91-150)||(18358840-18358899)
chr5 (65-136)||(6296888-6296958)
chr5 (88-119)||(15024799-15024830)
chr5 (82-148)||(39735391-39735458)
chr5 (109-139)||(9003001-9003031)
chr5 (61-119)||(16609664-16609722)
chr5 (93-135)||(33674801-33674843)
chr5 (107-136)||(29859289-29859318)
chr5 (78-149)||(38701141-38701213)
[»] scaffold0071 (1 HSPs)
scaffold0071 (102-150)||(63447-63495)
[»] chr6 (10 HSPs)
chr6 (100-148)||(2477278-2477325)
chr6 (95-135)||(3004848-3004888)
chr6 (147-199)||(14289828-14289880)
chr6 (102-137)||(5556084-5556119)
chr6 (107-148)||(3535265-3535306)
chr6 (107-136)||(23402908-23402937)
chr6 (114-150)||(3416249-3416285)
chr6 (104-148)||(7448971-7449014)
chr6 (155-195)||(9771913-9771953)
chr6 (83-119)||(28022119-28022155)
[»] chr4 (11 HSPs)
chr4 (100-148)||(27112397-27112444)
chr4 (95-149)||(3678311-3678365)
chr4 (93-135)||(38020436-38020478)
chr4 (96-137)||(17079997-17080038)
chr4 (103-134)||(10170629-10170660)
chr4 (102-137)||(33021211-33021246)
chr4 (95-126)||(33257203-33257234)
chr4 (93-136)||(38569437-38569480)
chr4 (175-216)||(25968142-25968183)
chr4 (66-123)||(38752224-38752280)
chr4 (100-148)||(44307199-44307246)
[»] scaffold0472 (1 HSPs)
scaffold0472 (152-197)||(11808-11853)


Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 33 - 383
Target Start/End: Complemental strand, 35451235 - 35450885
Alignment:
Q  33 aatcacaaactcaattgagctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaaca 132  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35451235 aatcacaaactcaattgatttatgggttaaaagagttggaggttttgggttcaaactcaaacgaatgagtaaatattaatctaacaactaattattaaca 35451136  T
Q  133 tttgtcacttaaaaaatacaaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35451135 tttgtcacttaaaaaatacaaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaa 35451036  T
Q  233 aattcttaacgcgacctcgagcgttatttaaaacctatttcattaaggtgtactgatttatttagtattttgataaaaatgaaaaatttgtatggattta 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35451035 aattcttaacgcgacctcgagcgttatttaaaacctatttcattaaggtgtactgatttatttagtattttgataaaaatgaaaaatttgtatggattta 35450936  T
Q  333 gcaattggtatgatgattaggctataagtcgttagctttaactgtttggga 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35450935 gcaattggtatgatgattaggctataagtcgttagctttaactgtttggga 35450885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 382 - 485
Target Start/End: Complemental strand, 35450838 - 35450735
Alignment:
Q  382 gaaactagttgcatcattattcattacctaaggattgctattagtgttgagttctctcttttccctccttcccctcttccaaattcttgcagtattccat 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35450838 gaaactagttgcatcattattcattacctaaggattgctattagtgttgagttctctcttttccctccttcccctcttccaagttcttgcagtattccat 35450739  T
Q  482 cttc 485  Q
    ||||    
T  35450738 cttc 35450735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 25635930 - 25635870
Alignment:
Q  175 caatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaat 235  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||    
T  25635930 caatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaatcgcaaaat 25635870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 37829939 - 37830042
Alignment:
Q  47 ttgagctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaa 146  Q
    |||| ||| |||||||| |||||||| ||  ||  ||||||| |  ||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||    
T  37829939 ttgatctaagggttaaaggagttggaagtcctggcttcaaacccggacgaaggagtagatattaatctaacaactaattactaacatttgtcattcaaaa 37830038  T
Q  147 aata 150  Q
    ||||    
T  37830039 aata 37830042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 7879105 - 7879050
Alignment:
Q  84 caaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttgtca 139  Q
    ||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7879105 caaacccagacgaaggagtaaatattaatctaacaactaattgctaacatttgtca 7879050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 3294557 - 3294509
Alignment:
Q  99 gagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  3294557 gagtaaatattaatctaacaattaattactaatatttgtca-ttaaaaaa 3294509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 23355916 - 23355973
Alignment:
Q  81 gttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttgtc 138  Q
    ||||||||||| || || |||||||||||||||||| |||||| ||||||||| ||||    
T  23355916 gttcaaactcagacaaaggagtaaatattaatctaaaaactaaatactaacatatgtc 23355973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 33872864 - 33872793
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac-aactaattactaacatttg 136  Q
    ||||||||||||||| |||||||| | ||| || || |||||||||||||||| |||||| ||||||||||||    
T  33872864 gagttggaggttttgggttcaaac-cgaacaaaggactaaatattaatctaacaaactaactactaacatttg 33872793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 24118411 - 24118454
Alignment:
Q  153 aataattttaataaaattcgtacaatgttgtgattaattcacac 196  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||    
T  24118411 aataattttaataagatttgtacaatgttgtgatgaattcacac 24118454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 7913870 - 7913833
Alignment:
Q  99 gagtaaatattaatctaacaactaattactaacatttg 136  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  7913870 gagtaaatattaatataacaactaactactaacatttg 7913833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 32522333 - 32522280
Alignment:
Q  101 gtaaatattaatctaacaactaattactaacatttgtcacttaaaaaatacaaa 154  Q
    ||||||||||||||||||| ||| |||||||| |||||| ||  ||||||||||    
T  32522333 gtaaatattaatctaacaattaactactaacaattgtcatttctaaaatacaaa 32522280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 3140460 - 3140492
Alignment:
Q  103 aaatattaatctaacaactaattactaacattt 135  Q
    |||||||||||||||||||||||||||| ||||    
T  3140460 aaatattaatctaacaactaattactaagattt 3140492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 10428081 - 10428023
Alignment:
Q  81 gttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttgtca 139  Q
    ||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||    
T  10428081 gttcaaactcatacaaatgagtaaatgttaatctaacaactaattacgaacatttgtca 10428023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 42529470 - 42529540
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    |||||||||||  |||||||||||| ||||||| ||||||||||||||||||||| | | |||||||||||    
T  42529470 gagttggaggtcatgagttcaaacttaaacgaaagagtaaatattaatctaacaattgactactaacattt 42529540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 15328162 - 15328079
Alignment:
Q  65 gagttggaggttttgagttcaaact-caaacgaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||| ||| | ||||| | ||||||||||||||||||||||| ||| || |||||||||||| |||||| ||||||||    
T  15328162 gagttggaggtattggggtcaaaattcaaacgaatgagtaaatattaatgtaaaaattaattactaacacttgtca-ttaaaaaa 15328079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 48308129 - 48308082
Alignment:
Q  102 taaatattaatctaacaactaattactaacatttgtcacttaaaaaata 150  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  48308129 taaatattaatctaacaactaactactaacatttgtca-ttaaaaaata 48308082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 38996840 - 38996882
Alignment:
Q  92 aacgaatgagtaaatattaatctaacaactaattactaacatt 134  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  38996840 aacgaatgagtaaatattaatctaacaacttgttactaacatt 38996882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 41737987 - 41737945
Alignment:
Q  95 gaatgagtaaatattaatctaacaactaattactaacatttgt 137  Q
    |||||| ||||||||||||||||||||||||||||| ||||||    
T  41737987 gaatgattaaatattaatctaacaactaattactaatatttgt 41737945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 32775748 - 32775797
Alignment:
Q  104 aatattaatctaacaactaattactaacatttgtcacttaaaaaatacaa 153  Q
    |||||||||||||||||||| || |||||||||||| | |||||||||||    
T  32775748 aatattaatctaacaactaactaataacatttgtcattaaaaaaatacaa 32775797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 32104245 - 32104130
Alignment:
Q  152 aaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaattcttaacgcgacctcg 251  Q
    |||||||||||||||  || || | ||||||||||||||| ||||||| || |   |||||||||| | | ||||||||||||| ||| || | ||||||    
T  32104245 aaataattttaataacgtttgtgccatgttgtgattaatttacaccgcgactacaacaatccgtaatagctgaaatcacaaaatcctt-acacaacctcg 32104147  T
Q  252 agcgttatttaaaacct 268  Q
    |||  ||||||||||||    
T  32104146 agcactatttaaaacct 32104130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 49972727 - 49972779
Alignment:
Q  96 aatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    |||||||||| |||||| |||||||||||||||||||||| ||| | ||||||    
T  49972727 aatgagtaaagattaatataacaactaattactaacatttttcattcaaaaaa 49972779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 7255240 - 7255197
Alignment:
Q  96 aatgagtaaatattaatctaacaactaattactaacatttgtca 139  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||    
T  7255240 aatgagtaaatattaatttaacaacgaattactaatatttgtca 7255197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 40111767 - 40111808
Alignment:
Q  108 ttaatctaacaactaattactaacatttgtcacttaaaaaata 150  Q
    |||||||||||||||||||||||||||||| | ||||||||||    
T  40111767 ttaatctaacaactaattactaacatttgtta-ttaaaaaata 40111808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 19164327 - 19164384
Alignment:
Q  78 tgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    |||| |||||||||||| || ||| | |||||||| ||| ||||||||||||||||||    
T  19164327 tgaggtcaaactcaaactaaggagcatatattaatataaaaactaattactaacattt 19164384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 21498466 - 21498406
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaatta 126  Q
    ||||||||||| | |||||||||  || |||||||||||||||||| ||||| |||||||||    
T  21498466 gagttggaggtct-gagttcaaatccagacgaatgagtaaatattagtctaaaaactaatta 21498406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 46515546 - 46515489
Alignment:
Q  78 tgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    ||||||||||   |||||||| | ||||||||||| ||||||||||||||||| ||||    
T  46515546 tgagttcaaatcaaaacgaattaataaatattaatttaacaactaattactaatattt 46515489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 51569845 - 51569914
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac-aactaattactaacat 133  Q
    |||||||||||| || ||||||||||  ||||| ||| | ||||||||||||| |||||| |||||||||    
T  51569845 gagttggaggttctgggttcaaactcggacgaaggagaagatattaatctaacaaactaactactaacat 51569914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 5805175 - 5805207
Alignment:
Q  102 taaatattaatctaacaactaattactaacatt 134  Q
    |||||||||||||||||||| ||||||||||||    
T  5805175 taaatattaatctaacaacttattactaacatt 5805207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 25335104 - 25335140
Alignment:
Q  92 aacgaatgagtaaatattaatctaacaactaattact 128  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  25335104 aacgaatgaataaatattaatccaacaactaattact 25335140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 48871400 - 48871368
Alignment:
Q  116 acaactaattactaacatttgtcacttaaaaaa 148  Q
    |||||||||||||||||||||||| ||||||||    
T  48871400 acaactaattactaacatttgtcaattaaaaaa 48871368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 13402226 - 13402318
Alignment:
Q  176 aatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaattctta-acgcgacctcgagcgttatttaaaacct 268  Q
    |||||||||||||||||||||||| ||||  ||||||||||||| | |||||||| ||| ||||| |||||||| ||| |||||||| ||||||    
T  13402226 aatgttgtgattaattcacaccgcgacaaccgcaatccgtaacagctgaaatcacgaaa-tcttatacgcgaccacgaccgttatttgaaacct 13402318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 14770886 - 14770969
Alignment:
Q  65 gagttggaggttttgagttcaaact-caaacgaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||| ||| | ||||| | ||||||||||||||||||||||| ||| ||||||||||||||| |||||| ||||||||    
T  14770886 gagttggaggtattggggtcaaaattcaaacgaatgagtaaatattaatgtaaaaactaattactaacacttgtca-ttaaaaaa 14770969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 26055485 - 26055555
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    |||||||||||  || |||||||||  || ||| |||||||||||||||||| ||||||||||||||||||    
T  26055485 gagttggaggtcatgggttcaaacttgaatgaaagagtaaatattaatctaataactaattactaacattt 26055555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 14768183 - 14768266
Alignment:
Q  65 gagttggaggttttgagttcaaact-caaacgaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||| ||| | ||||| | ||||||||||||||||||||||| ||| || |||||||||||| |||||| ||||||||    
T  14768183 gagttggaggtattggggtcaaaattcaaacgaatgagtaaatattaatgtaaaaattaattactaacacttgtca-ttaaaaaa 14768266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 16622625 - 16622586
Alignment:
Q  109 taatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  16622625 taatctaacaactaattactaacatttgtcatttaaaaaa 16622586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 33300552 - 33300497
Alignment:
Q  80 agttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||| ||| ||||    
T  33300552 agttcaaactcaaacgaaatagtaaatattaatttaacaactaattattaatattt 33300497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 5368287 - 5368335
Alignment:
Q  99 gagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  5368287 gagtaaatattaatcgaacaagtaattactaacatttgtca-ttaaaaaa 5368335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 13380481 - 13380530
Alignment:
Q  99 gagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||||||||||||||||| ||||| ||||||||| | ||||||    
T  13380481 gagtaaatattaatctaacaactaactactagcatttgtcattcaaaaaa 13380530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 20472419 - 20472480
Alignment:
Q  62 aaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaa 123  Q
    ||||||||||||  | || ||||||||||| ||| | |||||||||||||||||||||||||    
T  20472419 aaagagttggagactctgggttcaaactcagacggaagagtaaatattaatctaacaactaa 20472480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 12020094 - 12020146
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac 117  Q
    |||||||||||  || |||||||| |||| |||||||||||||||||||||||    
T  12020094 gagttggaggtcctgggttcaaacccaaatgaatgagtaaatattaatctaac 12020146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 23489999 - 23489967
Alignment:
Q  172 gtacaatgttgtgattaattcacaccgcaacaa 204  Q
    |||||||||||||||||||||||||||||||||    
T  23489999 gtacaatgttgtgattaattcacaccgcaacaa 23489967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 18069349 - 18069388
Alignment:
Q  100 agtaaatattaatctaacaactaattactaacatttgtca 139  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  18069349 agtaaatattattccaacaactaattactaacatttgtca 18069388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 19349536 - 19349586
Alignment:
Q  85 aaactcaaacgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    |||||| |||||| ||||||||||| |||||||||| ||||||||| ||||    
T  19349536 aaactcgaacgaaagagtaaatattgatctaacaacaaattactaatattt 19349586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 30756236 - 30756198
Alignment:
Q  101 gtaaatattaatctaacaactaattactaacatttgtca 139  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  30756236 gtaaatattaatctaacaactaattaccaatatttgtca 30756198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 23689607 - 23689578
Alignment:
Q  107 attaatctaacaactaattactaacatttg 136  Q
    ||||||||||||||||||||||||||||||    
T  23689607 attaatctaacaactaattactaacatttg 23689578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 38580516 - 38580483
Alignment:
Q  102 taaatattaatctaacaactaattactaacattt 135  Q
    |||||||||||||||||| |||||||||||||||    
T  38580516 taaatattaatctaacaattaattactaacattt 38580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 9834717 - 9834641
Alignment:
Q  47 ttgagctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaa 123  Q
    |||||||| | |||||| |||| ||||||  |  ||| ||||||| ||||| ||||||||||||| |||||||||||    
T  9834717 ttgagctaagcgttaaaggagtcggaggtcctaggtttaaactcacacgaaagagtaaatattaacctaacaactaa 9834641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 12165733 - 12165705
Alignment:
Q  107 attaatctaacaactaattactaacattt 135  Q
    |||||||||||||||||||||||||||||    
T  12165733 attaatctaacaactaattactaacattt 12165705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 12410161 - 12410133
Alignment:
Q  107 attaatctaacaactaattactaacattt 135  Q
    |||||||||||||||||||||||||||||    
T  12410161 attaatctaacaactaattactaacattt 12410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 35753108 - 35753155
Alignment:
Q  100 agtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    |||||||||||||||||||| |||||| |||||||| ||| ||||||||    
T  35753108 agtaaatattaatctaacaaataattaataacatttatca-ttaaaaaa 35753155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 41508215 - 41508142
Alignment:
Q  66 agttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttgtca 139  Q
    |||| |||||| ||||||||||| |  ||||| |||||||||||||| |||||||||||| |||||||||||||    
T  41508215 agttagaggttctgagttcaaacccggacgaaggagtaaatattaatataacaactaattgctaacatttgtca 41508142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 25727010 - 25726928
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    |||| ||||||| ||  |||||||| |||| |||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||    
T  25727010 gagtcggaggttatggattcaaactaaaacaaatgagtaaatattaatctaacaattaactactaacatttttca-ttaaaaaa 25726928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 10156316 - 10156384
Alignment:
Q  81 gttcaaactcaaacgaatgagt--aaatattaatctaacaactaattactaacatttgtcacttaaaaa 147  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||| || ||| |||||||| |||||||    
T  10156316 gttcaaactcaaacgaatgagtaaaaatattaatctaacaattaactattaatatttgtcatttaaaaa 10156384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 25728076 - 25728112
Alignment:
Q  103 aaatattaatctaacaactaattactaacatttgtca 139  Q
    |||||||||||||||||||||| ||||||||||||||    
T  25728076 aaatattaatctaacaactaatcactaacatttgtca 25728112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 31827366 - 31827306
Alignment:
Q  62 aaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaacta 122  Q
    ||||||||||||||  || |||||||| | ||| ||||||||||||||||||||| |||||    
T  31827366 aaagagttggaggtcatgtgttcaaacacgaacaaatgagtaaatattaatctaagaacta 31827306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 42237615 - 42237563
Alignment:
Q  147 aatacaaataattttaataaaattcgtacaatgttgtgattaattcacaccgc 199  Q
    |||| ||||||||||||||| ||| || |||||||||| ||||||||||||||    
T  42237615 aatataaataattttaataagatttgtgcaatgttgtggttaattcacaccgc 42237563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 15608341 - 15608391
Alignment:
Q  97 atgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||    
T  15608341 atgagtaaatattaatctaacaattaactaccaacatttgtca-ttaaaaaa 15608391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 20242429 - 20242479
Alignment:
Q  100 agtaaatattaatctaacaactaattactaacatttgtcacttaaaaaata 150  Q
    ||||||||||||||||||  ||||| |||||||||||||| | ||||||||    
T  20242429 agtaaatattaatctaacccctaataactaacatttgtcattcaaaaaata 20242479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 33859258 - 33859213
Alignment:
Q  93 acgaatgagtaaatattaatctaacaactaattactaacatttgtca 139  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  33859258 acgaatgagtaaatattaatctaacaattaatta-taaaatttgtca 33859213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 1882440 - 1882485
Alignment:
Q  103 aaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    |||||||||||| |||| ||||||||||||||  ||||||||||||    
T  1882440 aaatattaatcttacaattaattactaacattgatcacttaaaaaa 1882485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 5251447 - 5251418
Alignment:
Q  107 attaatctaacaactaattactaacatttg 136  Q
    ||||||||||||||||||||||||||||||    
T  5251447 attaatctaacaactaattactaacatttg 5251418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 41342256 - 41342313
Alignment:
Q  72 aggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattacta 129  Q
    |||| ||||||||||| || ||| || || |||||||||||||||||||||| |||||    
T  41342256 aggtcttgagttcaaaatcgaacaaaagaataaatattaatctaacaactaactacta 41342313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 41714261 - 41714310
Alignment:
Q  86 aactcaaacgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    ||||||||||||  ||||||||||||| ||| || |||||||||||||||    
T  41714261 aactcaaacgaaaaagtaaatattaatttaataattaattactaacattt 41714310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 20961659 - 20961623
Alignment:
Q  99 gagtaaatattaatctaacaactaattactaacattt 135  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  20961659 gagtacatattaatctatcaactaattactaacattt 20961623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 46611027 - 46610957
Alignment:
Q  67 gttggaggttttgagttcaaactcaaacgaatgagtaaata-ttaatctaacaactaattactaacatttg 136  Q
    |||||||||  |||||||||||||| || ||||| |||||| |||||||||||||||| ||||||||||||    
T  46611027 gttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacatttg 46610957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 15276025 - 15275936
Alignment:
Q  62 aaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaatac 151  Q
    |||||||| |||||| ||||||||||  ||||| || ||||||||||||||| |||||||||   ||||||||||||  | |||||||||    
T  15276025 aaagagtttgaggttatgagttcaaatccaaacaaaagagtaaatattaatcaaacaactaaacgctaacatttgtctttaaaaaaatac 15275936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 10799268 - 10799304
Alignment:
Q  99 gagtaaatattaatctaacaactaattactaacattt 135  Q
    |||||||||||||||||||||||||||||||||||||    
T  10799268 gagtaaatattaatctaacaactaattactaacattt 10799304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 10280412 - 10280491
Alignment:
Q  57 ggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttg 136  Q
    ||||||| |||  ||||||| || ||| ||||| | ||||| ||||||||||||||||||||||||||||  ||||||||    
T  10280412 ggttaaaggagggggaggttatgtgtttaaacttagacgaaggagtaaatattaatctaacaactaattaagaacatttg 10280491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 2783560 - 2783606
Alignment:
Q  91 aaacgaatgagtaaatattaatctaacaactaattactaacatttgt 137  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||||    
T  2783560 aaacaaatgagtaaatattaatctaacaaataactactaacatttgt 2783606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 9457757 - 9457798
Alignment:
Q  175 caatgttgtgattaattcacaccgcaacaatggcaatccgta 216  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  9457757 caatgttgtgattaattcacaccgcaacaaccgcaatccgta 9457798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 9461854 - 9461895
Alignment:
Q  175 caatgttgtgattaattcacaccgcaacaatggcaatccgta 216  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  9461854 caatgttgtgattaattcacaccgcaacaaccgcaatccgta 9461895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 26828587 - 26828640
Alignment:
Q  152 aaataattttaataaaattcgtacaatgttgtgattaattcacaccgcaacaat 205  Q
    |||||| |||||||||||| || ||||||||||||||||| ||||||| |||||    
T  26828587 aaataagtttaataaaatttgtgcaatgttgtgattaatttacaccgcgacaat 26828640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 29561257 - 29561330
Alignment:
Q  66 agttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttgtca 139  Q
    ||||| || |||||||||||||| || || ||||||||||||||||||||| || ||| || ||| ||||||||    
T  29561257 agttgaagattttgagttcaaacccatacaaatgagtaaatattaatctaataattaactaataatatttgtca 29561330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 6871259 - 6871315
Alignment:
Q  92 aacgaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||| |||| ||| |||||||| |||||| ||||||||||||||| ||||||||    
T  6871259 aacgaataagtatatactaatctaataactaactactaacatttgtcatttaaaaaa 6871315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 31283760 - 31283843
Alignment:
Q  66 agttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaac-aactaattactaacatttgtcacttaaaaaat 149  Q
    |||||||||| ||| |||||||| |  |||| |||||||||||||||||||| |||||| |||||| |||||||| | |||||||    
T  31283760 agttggaggtcttgggttcaaac-ctgacgattgagtaaatattaatctaacaaactaactactaatatttgtcattaaaaaaat 31283843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 45443479 - 45443435
Alignment:
Q  93 acgaatgagtaaatattaatctaac-aactaattactaacatttg 136  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  45443479 acgaaggagtaaatattaatctaacaaactaattactaacatttg 45443435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 11391382 - 11391330
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaa 119  Q
    |||||||| ||| |||||||||||||||||||||||||  |||| ||||||||||    
T  11391382 gagttggaagttctgagttcaaactcaaacgaatgagt--atatcaatctaacaa 11391330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 47404922 - 47404872
Alignment:
Q  99 gagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaata 150  Q
    |||||||||||||||||||| ||||||||||||| ||| || ||||||||||    
T  47404922 gagtaaatattaatctaacatctaattactaacaattgcca-ttaaaaaata 47404872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 9454516 - 9454569
Alignment:
Q  82 ttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    |||||||||| | | | ||||||||||||||||||||||||| |||||| ||||    
T  9454516 ttcaaactcagagggaagagtaaatattaatctaacaactaaatactaatattt 9454569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 15535679 - 15535650
Alignment:
Q  107 attaatctaacaactaattactaacatttg 136  Q
    ||||||||||||||||||||||||||||||    
T  15535679 attaatctaacaactaattactaacatttg 15535650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 44752003 - 44751947
Alignment:
Q  67 gttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaa 123  Q
    |||||||||| || |||||||| |  || |||||||||||||||||||||| |||||    
T  44752003 gttggaggttctgggttcaaacccggacaaatgagtaaatattaatctaaccactaa 44751947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 49416314 - 49416346
Alignment:
Q  103 aaatattaatctaacaactaattactaacattt 135  Q
    |||||||||| ||||||||||||||||||||||    
T  49416314 aaatattaatttaacaactaattactaacattt 49416346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 9860817 - 9860748
Alignment:
Q  47 ttgagctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaa 116  Q
    |||||||| |||||||| |||||||||||  |||||||||||||| || || ||||||||| ||||||||    
T  9860817 ttgagctaagggttaaaggagttggaggtcctgagttcaaactcagacaaaggagtaaatactaatctaa 9860748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 7367609 - 7367681
Alignment:
Q  51 gctatgggttaaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaa 123  Q
    |||| |||||||| ||||||||||| ||| |||||||| |  ||||| ||||||||||||||||||| |||||    
T  7367609 gctaagggttaaaggagttggaggtcttgggttcaaacaccgacgaaggagtaaatattaatctaactactaa 7367681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 528890 - 528831
Alignment:
Q  66 agttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaatt 125  Q
    ||||||||||| || ||| |||| |||||||| || ||||||||||||||||||||||||    
T  528890 agttggaggttatgggttaaaacccaaacgaaagaataaatattaatctaacaactaatt 528831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 18358899 - 18358840
Alignment:
Q  91 aaacgaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaata 150  Q
    ||||||||||||||||||||| ||  ||||||||||||| ||||||||| | ||||||||    
T  18358899 aaacgaatgagtaaatattaaactgtcaactaattactatcatttgtcattaaaaaaata 18358840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 6296888 - 6296958
Alignment:
Q  65 gagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaattactaacatttg 136  Q
    |||||||||||| || |||||||| || || || ||| ||| | ||||||||||||||||||||||||||||    
T  6296888 gagttggaggttctgggttcaaacccagacaaaggagaaaa-actaatctaacaactaattactaacatttg 6296958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 15024830 - 15024799
Alignment:
Q  88 ctcaaacgaatgagtaaatattaatctaacaa 119  Q
    ||||||||||||||||||||||||||||||||    
T  15024830 ctcaaacgaatgagtaaatattaatctaacaa 15024799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 39735458 - 39735391
Alignment:
Q  82 ttcaaactcaaacgaatgagtaaatattaatctaac-aactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||| | ||| ||||||||||||||||| |||| |||||| ||||||||||||||| | ||||||    
T  39735458 ttcaaacccgaacaaatgagtaaatattaatataacaaactaactactaacatttgtcattcaaaaaa 39735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 9003001 - 9003031
Alignment:
Q  109 taatctaacaactaattactaacatttgtca 139  Q
    |||||||||||||||||||||||||||||||    
T  9003001 taatctaacaactaattactaacatttgtca 9003031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 16609722 - 16609664
Alignment:
Q  61 aaaagagttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaa 119  Q
    |||| |||| ||||||||| ||||||||||| | ||| || ||||||||||||||||||    
T  16609722 aaaaaagtttgaggttttgggttcaaactcagatgaaggaataaatattaatctaacaa 16609664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 33674801 - 33674843
Alignment:
Q  93 acgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    |||||| || ||| |||||||||||||||||||||||||||||    
T  33674801 acgaataagaaaaaattaatctaacaactaattactaacattt 33674843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 29859289 - 29859318
Alignment:
Q  107 attaatctaacaactaattactaacatttg 136  Q
    ||||||||||||||||||||||||||||||    
T  29859289 attaatctaacaactaattactaacatttg 29859318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 38701213 - 38701141
Alignment:
Q  78 tgagttcaaactcaaacgaatgagt-aaatattaatctaac-aactaattactaacatttgtcacttaaaaaat 149  Q
    |||||||||||||| |||||| ||| ||||||||||||||| |||||  |||||||||||| || |||||||||    
T  38701213 tgagttcaaactcagacgaataagtaaaatattaatctaacaaactatctactaacatttgaca-ttaaaaaat 38701141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 63447 - 63495
Alignment:
Q  102 taaatattaatctaacaactaattactaacatttgtcacttaaaaaata 150  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||||    
T  63447 taaatattaatctaacaactaattaataacatttgtcattcaaaaaata 63495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 2477278 - 2477325
Alignment:
Q  100 agtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  2477278 agtaaatattaatctaacaattaattactaacatttgtca-ttaaaaaa 2477325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 3004888 - 3004848
Alignment:
Q  95 gaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  3004888 gaatgagcaaatattaatctaacaactaattactaacattt 3004848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 14289880 - 14289828
Alignment:
Q  147 aatacaaataattttaataaaattcgtacaatgttgtgattaattcacaccgc 199  Q
    |||| ||||||||||||||| |||  ||||||||| |||||||||||||||||    
T  14289880 aatataaataattttaataacatttatacaatgttttgattaattcacaccgc 14289828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 5556084 - 5556119
Alignment:
Q  102 taaatattaatctaacaactaattactaacatttgt 137  Q
    |||||||||||||||||| |||||||||||||||||    
T  5556084 taaatattaatctaacaattaattactaacatttgt 5556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 3535265 - 3535306
Alignment:
Q  107 attaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    |||||||||||||||||||||||| |||||||| | ||||||    
T  3535265 attaatctaacaactaattactaatatttgtcattgaaaaaa 3535306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 23402908 - 23402937
Alignment:
Q  107 attaatctaacaactaattactaacatttg 136  Q
    ||||||||||||||||||||||||||||||    
T  23402908 attaatctaacaactaattactaacatttg 23402937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 3416249 - 3416285
Alignment:
Q  114 taacaactaattactaacatttgtcacttaaaaaata 150  Q
    |||||||||||||||||||||||||| | ||||||||    
T  3416249 taacaactaattactaacatttgtcattcaaaaaata 3416285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 7448971 - 7449014
Alignment:
Q  104 aatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  7448971 aatattaatctaacaacaaattactaaaatttgtca-ttaaaaaa 7449014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 9771913 - 9771953
Alignment:
Q  155 taattttaataaaattcgtacaatgttgtgattaattcaca 195  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  9771913 taattttaataacatttgtgcaatgttgtgattaattcaca 9771953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 28022119 - 28022155
Alignment:
Q  83 tcaaactcaaacgaatgagtaaatattaatctaacaa 119  Q
    |||||||  ||||||||||||||||||||||||||||    
T  28022119 tcaaactagaacgaatgagtaaatattaatctaacaa 28022155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 27112444 - 27112397
Alignment:
Q  100 agtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  27112444 agtaaatattaatctaacaattaattactaacatttgtca-ttaaaaaa 27112397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 3678365 - 3678311
Alignment:
Q  95 gaatgagtaaatattaatctaacaactaattactaacatttgtcacttaaaaaat 149  Q
    |||| ||||||||||||| |||||||||||| ||||||||| ||| |||||||||    
T  3678365 gaataagtaaatattaatttaacaactaattgctaacatttatcatttaaaaaat 3678311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 38020436 - 38020478
Alignment:
Q  93 acgaatgagtaaatattaatctaacaactaattactaacattt 135  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  38020436 acgaaggagtaaatattaatctaacaactgattactaacattt 38020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 17079997 - 17080038
Alignment:
Q  96 aatgagtaaatattaatctaacaactaattactaacatttgt 137  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  17079997 aatgagtaaatattaatgtaacaactaactactaacatttgt 17080038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 134
Target Start/End: Complemental strand, 10170660 - 10170629
Alignment:
Q  103 aaatattaatctaacaactaattactaacatt 134  Q
    ||||||||||||||||||||||||||||||||    
T  10170660 aaatattaatctaacaactaattactaacatt 10170629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 33021211 - 33021246
Alignment:
Q  102 taaatattaatctaacaactaattactaacatttgt 137  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33021211 taaatattaatctaacaactaattactaacaattgt 33021246  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 33257234 - 33257203
Alignment:
Q  95 gaatgagtaaatattaatctaacaactaatta 126  Q
    ||||||||||||||||||||||||||||||||    
T  33257234 gaatgagtaaatattaatctaacaactaatta 33257203  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 38569437 - 38569480
Alignment:
Q  93 acgaatgagtaaatattaatctaacaactaattactaacatttg 136  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||    
T  38569437 acgaaggagtaaatattaatctaacaactaacttctaacatttg 38569480  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 25968142 - 25968183
Alignment:
Q  175 caatgttgtgattaattcacaccgcaacaatggcaatccgta 216  Q
    ||||||||||||||||||||||||| ||||  ||||||||||    
T  25968142 caatgttgtgattaattcacaccgcgacaaccgcaatccgta 25968183  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 38752224 - 38752280
Alignment:
Q  66 agttggaggttttgagttcaaactcaaacgaatgagtaaatattaatctaacaactaa 123  Q
    |||||||||||| | ||||||||||| || ||||| ||||||||||||||| ||||||    
T  38752224 agttggaggtttgg-gttcaaactcagacaaatgaataaatattaatctaataactaa 38752280  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 44307199 - 44307246
Alignment:
Q  100 agtaaatattaatctaacaactaattactaacatttgtcacttaaaaaa 148  Q
    |||||||||||||||||||| |||||||||| || ||||| ||||||||    
T  44307199 agtaaatattaatctaacaattaattactaaaatctgtca-ttaaaaaa 44307246  T

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Target: scaffold0472 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 11853 - 11808
Alignment:
Q  152 aaataattttaataaaattcgtacaatgttgtgattaattcacacc 197  Q
    ||||||||||||||| ||| || |||||||||| ||||||||||||    
T  11853 aaataattttaataagatttgtgcaatgttgtggttaattcacacc 11808  T

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