View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20774_low_4 (Length: 450)
Name: NF20774_low_4
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20774_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 292 - 436
Target Start/End: Original strand, 53611985 - 53612130
Alignment:
| Q |
292 |
gataaaagttgaaatagtttttattttgcttgttaataatttatattatatttataaaatattacnnnnnnnn-tcatataaataagtaaaaatattaat |
390 |
Q |
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| T |
53611985 |
gataaaagttgaaatagtttttattttgcttgttaataatttatattatatttataaaatattacaaaaaaaaatcatataaataagtaaaaatattaat |
53612084 |
T |
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| Q |
391 |
ttagtttatatcacacttgctagagaagcttttgaataagtgatct |
436 |
Q |
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| T |
53612085 |
ttagtttatatcacacttgctagagaagcttttgaataagtgatct |
53612130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 53611825 - 53611883
Alignment:
| Q |
160 |
aattggcattttggtatcattaat---agtacacgtatagtattaaacaattaagtttg |
215 |
Q |
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| T |
53611825 |
aattggcattttggtatcattaataatagtacacgtatagtattaaacaattaagtttg |
53611883 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 26182630 - 26182697
Alignment:
| Q |
16 |
aggtggaaagatagtcatacgtattgttgggagaataagaattaaaaaacactgtaattgaatggcaa |
83 |
Q |
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| T |
26182630 |
aggtggaaagatagtcacagatattgttgggcaaatcagaattaaaaaacacagtaattgaatggcaa |
26182697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 543313 - 543384
Alignment:
| Q |
12 |
agagaggtggaaagatagtcatacgtattgttgggagaataagaattaaaaaacactgtaattgaatggcaa |
83 |
Q |
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| T |
543313 |
agagaggtggaaagatactcataaatattgttgggcaaatgagaattaaaaaacaaagtaattgaattgcaa |
543384 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 35752277 - 35752207
Alignment:
| Q |
11 |
cagagaggtggaaagatagtcatacgtattgttgggagaataagaattaaaaaacactgtaattgaatggc |
81 |
Q |
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| T |
35752277 |
cagagagacggaaagatagtcataaatattgttgggcatatgagaattaaaaagcacagtaattgaatggc |
35752207 |
T |
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