View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20774_low_7 (Length: 297)

Name: NF20774_low_7
Description: NF20774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20774_low_7
NF20774_low_7
[»] chr4 (1 HSPs)
chr4 (11-297)||(54586049-54586336)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 54586049 - 54586336
Alignment:
Q  11 cagagacaggagtaaaggtaaaactactggttgtgtttttgaagaaacaaactgagttaaaggacacacaaggttgtggtttggactaaaacaaaagatg 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54586049 cagaaacaggagtaaaggtaaaactactggttgtgtttttgaagaaacaaactgagttaaaggacacacaaggttgtggtttgaactaaaacaaaagatg 54586148  T
Q  111 tctttatctag-actcaaagattgtggaaaagttgtgatgcttttttaacttgtgtggcgtggaagcactttttgtcatggaaataaaaactgatttttc 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54586149 tctttatctaggactcaaagattgtggaaaagttgtgatgcttttttaacttgtgtggcgtggaagcactttttgtcatggaaataaaaactgatttttc 54586248  T
Q  210 aggagaactttactttacccccttcaaatgagttatagtacatggagtgcaatacgtgtaattattagtgttctcttattctattacc 297  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54586249 aggataactttactttacccccttcaaatgagttatagtacatggagtgcaatacgtgtaattattagtgttttcttattctattacc 54586336  T

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